CSPI04G19250.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI04G19250.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 16906589 .. 16906879 (-)
Sequence length291
RNA-Seq ExpressionCSPI04G19250.1
SyntenyCSPI04G19250.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCAACAAAAGAAGTGGAAAATAAGGTGAAATTTGTTTTGAGAAGATTGTTTAGTGAATATTCTTTAAACGATCATAGCCATGAAGCATCTTCAAGCTCGATTGCATCATCTCAACTTCAAGTGCTTAAAGATTGTACATGTATGAGTCAACCTTTAGTTTGTAGTACTAGTACTAGTAGTAGTAGCTTTTTCACTACATCTAAAACTTCTTCTTCCGCTTCAGACGTTTTTCGCATCCATTTTGAAGATATGGATGAAGAGGATGTCCTAAGTGTGCATGGATAA

mRNA sequence

ATGGATCCAACAAAAGAAGTGGAAAATAAGGTGAAATTTGTTTTGAGAAGATTGTTTAGTGAATATTCTTTAAACGATCATAGCCATGAAGCATCTTCAAGCTCGATTGCATCATCTCAACTTCAAGTGCTTAAAGATTGTACATGTATGAGTCAACCTTTAGTTTGTAGTACTAGTACTAGTAGTAGTAGCTTTTTCACTACATCTAAAACTTCTTCTTCCGCTTCAGACGTTTTTCGCATCCATTTTGAAGATATGGATGAAGAGGATGTCCTAAGTGTGCATGGATAA

Coding sequence (CDS)

ATGGATCCAACAAAAGAAGTGGAAAATAAGGTGAAATTTGTTTTGAGAAGATTGTTTAGTGAATATTCTTTAAACGATCATAGCCATGAAGCATCTTCAAGCTCGATTGCATCATCTCAACTTCAAGTGCTTAAAGATTGTACATGTATGAGTCAACCTTTAGTTTGTAGTACTAGTACTAGTAGTAGTAGCTTTTTCACTACATCTAAAACTTCTTCTTCCGCTTCAGACGTTTTTCGCATCCATTTTGAAGATATGGATGAAGAGGATGTCCTAAGTGTGCATGGATAA

Protein sequence

MDPTKEVENKVKFVLRRLFSEYSLNDHSHEASSSSIASSQLQVLKDCTCMSQPLVCSTSTSSSSFFTTSKTSSSASDVFRIHFEDMDEEDVLSVHG*
Homology
[Close]
BLAST of CSPI04G19250.1 vs. NCBI nr
Match: KAE8637397.1 (hypothetical protein CSA_023374 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-10
Identity = 52/94 (55.32%), Postives = 60/94 (63.83%), Query Frame = 0 

Query: 1  MDPTKEVENKVKFVLRRLFSEYSLNDHSHEASSSSIASSQLQVLKDCTCMSQPLVCSTST 60
          M   KEV NKV+FVLRRLFS+Y                 QLQV +DC+        S ST
Sbjct: 10 MYTVKEVGNKVEFVLRRLFSKY----------------FQLQVFQDCSS------SSFST 69

Query: 61 SSSSFFTTSKTSSSASDVFRIHFEDMDEEDVLSV 95
          +S   F+TS+TSSSASDVFRIHFEDMDE+DVLSV
Sbjct: 70 TSRIAFSTSRTSSSASDVFRIHFEDMDEKDVLSV 81

The following BLAST results are available for this feature:
BLAST of CSPI04G19250.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G19250.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G19250.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8637397.11.7e-1055.32hypothetical protein CSA_023374 [Cucumis sativus][more]
BLAST of CSPI04G19250.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI04G19250CSPI04G19250gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G19250.1.cds1CSPI04G19250.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI04G19250.1CSPI04G19250.1-proteinpolypeptide