CSPI04G17990.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI04G17990.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DUF1985 domain-containing protein
Location	Chr4: 15441497 .. 15441942 (-)
Sequence length	339
RNA-Seq Expression	CSPI04G17990.1
Synteny	CSPI04G17990.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTGTGCTAAAAGAGTTGATGATAGGAATTTGTGCATGCTAAATTGGGTTGTGGACAGTCATCCAGAGTGGAAGGAATTAGTTGAAAGAGTATTTGACAATGATCGGGTAATGCATTAAGATTATGTAAATTGTAAAAAATTTAAATTAACTCTATATATATCCAATATACCAAAATATACTTGAGTCTAATACGTTTTAAATTTCTGCAACAGTTTGTATTCAAGGGTTTGTTTCCTGATGAAGATTTCATGGAAGAAAGTAAGTTCTATGATACTAAAACAAGACATTTCAAAAAAGGAGAATGCTTCAAAGAACTTGAGGGTATTAATACTCAGGTTCCTGAGTATTTCCTAAAATTTCAGGCAATGATGATCGCAAACAATGAAGAATTAAACAATAAGCTGGAAAAATTGATTGAAGAGGTTGAAGAGATTGAATAG

mRNA sequence

ATGTTCTGTGCTAAAAGAGTTGATGATAGGAATTTGTGCATGCTAAATTGGGTTGTGGACAGTCATCCAGAGTGGAAGGAATTAGTTGAAAGAGTATTTGACAATGATCGGTTTGTATTCAAGGGTTTGTTTCCTGATGAAGATTTCATGGAAGAAAGTAAGTTCTATGATACTAAAACAAGACATTTCAAAAAAGGAGAATGCTTCAAAGAACTTGAGGGTATTAATACTCAGGTTCCTGAGTATTTCCTAAAATTTCAGGCAATGATGATCGCAAACAATGAAGAATTAAACAATAAGCTGGAAAAATTGATTGAAGAGGTTGAAGAGATTGAATAG

Coding sequence (CDS)

ATGTTCTGTGCTAAAAGAGTTGATGATAGGAATTTGTGCATGCTAAATTGGGTTGTGGACAGTCATCCAGAGTGGAAGGAATTAGTTGAAAGAGTATTTGACAATGATCGGTTTGTATTCAAGGGTTTGTTTCCTGATGAAGATTTCATGGAAGAAAGTAAGTTCTATGATACTAAAACAAGACATTTCAAAAAAGGAGAATGCTTCAAAGAACTTGAGGGTATTAATACTCAGGTTCCTGAGTATTTCCTAAAATTTCAGGCAATGATGATCGCAAACAATGAAGAATTAAACAATAAGCTGGAAAAATTGATTGAAGAGGTTGAAGAGATTGAATAG

Protein sequence

MFCAKRVDDRNLCMLNWVVDSHPEWKELVERVFDNDRFVFKGLFPDEDFMEESKFYDTKTRHFKKGECFKELEGINTQVPEYFLKFQAMMIANNEELNNKLEKLIEEVEEIE*

Homology

[Close]

BLAST of CSPI04G17990.1 vs. ExPASy TrEMBL
Match: A0A5A7VB98 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001390 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.6e-26
Identity = 59/117 (50.43%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 1   MFCAKRVDDRNLCMLNWVVDSHPEWKELVERVFDNDRFVFKGLFPDEDFMEESKFYDTKT 60
           +FCA++ DD  +CMLNWVVDSHPEWK+L ++VFDND+F F+ +F +EDF+E   F++   
Sbjct: 27  IFCAQKADDNKICMLNWVVDSHPEWKDLAKKVFDNDQFKFEAMF-EEDFVERRTFHEYVM 86

Query: 61  RH-----FKKGECFKELEGINTQVPEYFLKFQAMMIANNEELNNKLEKLIEEVEEIE 113
           R      F++GE  ++ E  N ++P+YFLKFQ +++ NNE LNNKL+ LI+EVE ++
Sbjct: 87  REETNVTFERGESSRQGEASNKKIPDYFLKFQELILTNNECLNNKLDLLIKEVESLK 142

[Close]

BLAST of CSPI04G17990.1 vs. ExPASy TrEMBL
Match: A0A1S3CMB6 (uncharacterized protein LOC103502558 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502558 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.6e-26
Identity = 59/117 (50.43%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 1   MFCAKRVDDRNLCMLNWVVDSHPEWKELVERVFDNDRFVFKGLFPDEDFMEESKFYDTKT 60
           +FCA++ DD  +CMLNWVVDSHPEWK+L ++VFDND+F F+ +F +EDF+E   F++   
Sbjct: 52  IFCAQKADDNKICMLNWVVDSHPEWKDLAKKVFDNDQFKFEAMF-EEDFVERRTFHEYVM 111

Query: 61  RH-----FKKGECFKELEGINTQVPEYFLKFQAMMIANNEELNNKLEKLIEEVEEIE 113
           R      F++GE  ++ E  N ++P+YFLKFQ +++ NNE LNNKL+ LI+EVE ++
Sbjct: 112 REETNVTFERGESSRQGEASNKKIPDYFLKFQELILTNNECLNNKLDLLIKEVESLK 167

[Close]

BLAST of CSPI04G17990.1 vs. ExPASy TrEMBL
Match: A0A5A7UCM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00080 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.6e-26
Identity = 61/117 (52.14%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MFCAKRVDDRNLCMLNWVVDSHPEWKELVERVFDNDRFVFKGLFPDEDFMEESKFYDTKT 60
           +FCA++VDD  +CMLNWVVD+HPEWK+L E+VFDND+F F+ +F +EDF+E   F++   
Sbjct: 179 IFCAQKVDDNKICMLNWVVDNHPEWKDLAEKVFDNDQFKFEVMF-EEDFVERMMFHENVM 238

Query: 61  RH-----FKKGECFKELEGINTQVPEYFLKFQAMMIANNEELNNKLEKLIEEVEEIE 113
           R      F +GE   + E  N ++P+YFLKFQ +++ANNE LNNKL+ LI+EVE  +
Sbjct: 239 REETNGTFDRGESSWQGETSNEKIPDYFLKFQELILANNECLNNKLDLLIKEVESFK 294

[Close]

BLAST of CSPI04G17990.1 vs. ExPASy TrEMBL
Match: A0A5D3E3X1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00070 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.1e-26
Identity = 60/117 (51.28%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 1   MFCAKRVDDRNLCMLNWVVDSHPEWKELVERVFDNDRFVFKGLFPDEDFMEESKFYDTKT 60
           + CA++VDD  +CMLNWVVD+HPEWK+L E+VFDND+F F+ +F +EDF+E   F++   
Sbjct: 164 IICAQKVDDNKICMLNWVVDNHPEWKDLAEKVFDNDQFKFEVMF-EEDFVERMMFHENVM 223

Query: 61  RH-----FKKGECFKELEGINTQVPEYFLKFQAMMIANNEELNNKLEKLIEEVEEIE 113
           R      F++GE   + E  N ++P+YFLKFQ +++ANNE LNNKL+ LI+EVE ++
Sbjct: 224 REETNGTFERGESSWQGETSNEKIPDYFLKFQELILANNECLNNKLDLLIKEVESLK 279

[Close]

BLAST of CSPI04G17990.1 vs. ExPASy TrEMBL
Match: A0A0A0K3Z3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G284410 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 5.2e-25
Identity = 55/81 (67.90%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1  MFCAKRVDDRNLCMLNWVVDSHPEWKELVERVFDNDRFVFKGLFPDEDFMEESKFYDTKT 60
          MFC KRVDD NLCMLNW+VD+H EWKEL ERVFD ++FVFKGLFPDED ME + F+ T+T
Sbjct: 1  MFCDKRVDDSNLCMLNWIVDTHQEWKELAERVFDTNQFVFKGLFPDEDVMEGNMFHGTET 60

Query: 61 RHFKKGECFKELEGINTQVPE 82
          ++F+KGE  KE   INTQ+ E
Sbjct: 61 KNFEKGEYSKESARINTQIHE 81

[Close]

BLAST of CSPI04G17990.1 vs. NCBI nr
Match: XP_008464748.1 (PREDICTED: uncharacterized protein LOC103502558 isoform X1 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 3.3e-26
Identity = 59/117 (50.43%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 1   MFCAKRVDDRNLCMLNWVVDSHPEWKELVERVFDNDRFVFKGLFPDEDFMEESKFYDTKT 60
           +FCA++ DD  +CMLNWVVDSHPEWK+L ++VFDND+F F+ +F +EDF+E   F++   
Sbjct: 52  IFCAQKADDNKICMLNWVVDSHPEWKDLAKKVFDNDQFKFEAMF-EEDFVERRTFHEYVM 111

Query: 61  RH-----FKKGECFKELEGINTQVPEYFLKFQAMMIANNEELNNKLEKLIEEVEEIE 113
           R      F++GE  ++ E  N ++P+YFLKFQ +++ NNE LNNKL+ LI+EVE ++
Sbjct: 112 REETNVTFERGESSRQGEASNKKIPDYFLKFQELILTNNECLNNKLDLLIKEVESLK 167

[Close]

BLAST of CSPI04G17990.1 vs. NCBI nr
Match: KAA0065453.1 (uncharacterized protein E6C27_scaffold17G001390 [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 3.3e-26
Identity = 59/117 (50.43%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 1   MFCAKRVDDRNLCMLNWVVDSHPEWKELVERVFDNDRFVFKGLFPDEDFMEESKFYDTKT 60
           +FCA++ DD  +CMLNWVVDSHPEWK+L ++VFDND+F F+ +F +EDF+E   F++   
Sbjct: 27  IFCAQKADDNKICMLNWVVDSHPEWKDLAKKVFDNDQFKFEAMF-EEDFVERRTFHEYVM 86

Query: 61  RH-----FKKGECFKELEGINTQVPEYFLKFQAMMIANNEELNNKLEKLIEEVEEIE 113
           R      F++GE  ++ E  N ++P+YFLKFQ +++ NNE LNNKL+ LI+EVE ++
Sbjct: 87  REETNVTFERGESSRQGEASNKKIPDYFLKFQELILTNNECLNNKLDLLIKEVESLK 142

[Close]

BLAST of CSPI04G17990.1 vs. NCBI nr
Match: KAA0051301.1 (uncharacterized protein E6C27_scaffold55G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 7.4e-26
Identity = 61/117 (52.14%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MFCAKRVDDRNLCMLNWVVDSHPEWKELVERVFDNDRFVFKGLFPDEDFMEESKFYDTKT 60
           +FCA++VDD  +CMLNWVVD+HPEWK+L E+VFDND+F F+ +F +EDF+E   F++   
Sbjct: 179 IFCAQKVDDNKICMLNWVVDNHPEWKDLAEKVFDNDQFKFEVMF-EEDFVERMMFHENVM 238

Query: 61  RH-----FKKGECFKELEGINTQVPEYFLKFQAMMIANNEELNNKLEKLIEEVEEIE 113
           R      F +GE   + E  N ++P+YFLKFQ +++ANNE LNNKL+ LI+EVE  +
Sbjct: 239 REETNGTFDRGESSWQGETSNEKIPDYFLKFQELILANNECLNNKLDLLIKEVESFK 294

[Close]

BLAST of CSPI04G17990.1 vs. NCBI nr
Match: TYK30586.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-25
Identity = 60/117 (51.28%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 1   MFCAKRVDDRNLCMLNWVVDSHPEWKELVERVFDNDRFVFKGLFPDEDFMEESKFYDTKT 60
           + CA++VDD  +CMLNWVVD+HPEWK+L E+VFDND+F F+ +F +EDF+E   F++   
Sbjct: 164 IICAQKVDDNKICMLNWVVDNHPEWKDLAEKVFDNDQFKFEVMF-EEDFVERMMFHENVM 223

Query: 61  RH-----FKKGECFKELEGINTQVPEYFLKFQAMMIANNEELNNKLEKLIEEVEEIE 113
           R      F++GE   + E  N ++P+YFLKFQ +++ANNE LNNKL+ LI+EVE ++
Sbjct: 224 REETNGTFERGESSWQGETSNEKIPDYFLKFQELILANNECLNNKLDLLIKEVESLK 279

[Close]

BLAST of CSPI04G17990.1 vs. NCBI nr
Match: TYK22552.1 (uncharacterized protein E5676_scaffold584G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-23
Identity = 57/114 (50.00%), Postives = 81/114 (71.05%), Query Frame = 0


Query: 1   MFCAKRVDDRNLCMLNWVVDSHPEWKELVERVFDNDRFVFKGLFPDEDFMEESKFYDTKT 60
           +FC ++VDD  +C+L WVVDSHPEWKEL E VFDN +F ++ +F   DF+E S F++T+ 
Sbjct: 180 IFCVQKVDDNKICILKWVVDSHPEWKELAEMVFDNYQFQYQVMF-QNDFVERSMFHETEM 239

Query: 61  RH-----FKKGECFKELEGINTQVPEYFLKFQAMMIANNEELNNKLEKLIEEVE 110
           R      F++GEC ++ E  N ++  YFLKFQ +++ANNE LN KL+ LI+E E
Sbjct: 240 RDETHVTFERGECSRQPEPPNEKIAYYFLKFQELIMANNECLNQKLDNLIKEAE 292

The following BLAST results are available for this feature:

BLAST of CSPI04G17990.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G17990.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VB98	1.6e-26	50.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CMB6	1.6e-26	50.43	uncharacterized protein LOC103502558 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7UCM5	3.6e-26	52.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E3X1	6.1e-26	51.28	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00...	[more]
A0A0A0K3Z3	5.2e-25	67.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G284410 PE=4 SV=1	[more]

BLAST of CSPI04G17990.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464748.1	3.3e-26	50.43	PREDICTED: uncharacterized protein LOC103502558 isoform X1 [Cucumis melo]	[more]
KAA0065453.1	3.3e-26	50.43	uncharacterized protein E6C27_scaffold17G001390 [Cucumis melo var. makuwa]	[more]
KAA0051301.1	7.4e-26	52.14	uncharacterized protein E6C27_scaffold55G00080 [Cucumis melo var. makuwa]	[more]
TYK30586.1	1.3e-25	51.28	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
TYK22552.1	2.0e-23	50.00	uncharacterized protein E5676_scaffold584G00070 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI04G17990.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 87..112

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI04G17990	CSPI04G17990	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G17990.1.cds2	CSPI04G17990.1.cds2	CDS
CSPI04G17990.1.cds1	CSPI04G17990.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI04G17990.1	CSPI04G17990.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane