CSPI04G16640.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI04G16640.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 14028984 .. 14029396 (+)
Sequence length216
RNA-Seq ExpressionCSPI04G16640.1
SyntenyCSPI04G16640.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGCCCGCACCGAAGTTCTTGGCTGGCACCATCTTCTTCTTCTTCTTCTTCTTCCCCATTTCCTTCGGGTTCTGGTCTCTTAGTTTTAGACCTTCCGCCATTGTTTCTCACTCATCTCTCTCCTTCTTCTCTCCATCTTCAGTTTCCTTTCACAAGGTAAGCTTCCTCTTTCCAAATCCTCTACACCCACCAAATTTGTTTTGACTTTGTGTTCTTCATTTTCCTGGATCTGATTCATCTTACACTCTTCATGAATATCCCTTCATTGGGTTGAAATTTGTTTGATCGCACTCATAAACCATATTAGATTTCTGGGTTGATGTTGTTTTTTTTTTTTTTTAATTCTTGTGTAGGAAATTCCTGGATTCCTTTTCAACTTTATCTGGGTGTTGATGTTGTTTCCGATCTAG

mRNA sequence

ATGCGGCCCGCACCGAAGTTCTTGGCTGGCACCATCTTCTTCTTCTTCTTCTTCTTCCCCATTTCCTTCGGGTTCTGGTCTCTTAGTTTTAGACCTTCCGCCATTGTTTCTCACTCATCTCTCTCCTTCTTCTCTCCATCTTCAGTTTCCTTTCACAAGGAAATTCCTGGATTCCTTTTCAACTTTATCTGGGTGTTGATGTTGTTTCCGATCTAG

Coding sequence (CDS)

ATGCGGCCCGCACCGAAGTTCTTGGCTGGCACCATCTTCTTCTTCTTCTTCTTCTTCCCCATTTCCTTCGGGTTCTGGTCTCTTAGTTTTAGACCTTCCGCCATTGTTTCTCACTCATCTCTCTCCTTCTTCTCTCCATCTTCAGTTTCCTTTCACAAGGAAATTCCTGGATTCCTTTTCAACTTTATCTGGGTGTTGATGTTGTTTCCGATCTAG

Protein sequence

MRPAPKFLAGTIFFFFFFFPISFGFWSLSFRPSAIVSHSSLSFFSPSSVSFHKEIPGFLFNFIWVLMLFPI*
Homology
[Close]
BLAST of CSPI04G16640.1 vs. ExPASy TrEMBL
Match: A0A0A0L1K0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G334680 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MRPAPKFLAGTIFFFFFFFPISFGFWSLSFRPSAIVSHSSLSFFSPSSVSFHKEIPGFLF 60
          MRPAPKFLAGTIFFFFFFFPISFGFWSLSFRPSAIVSHSSLSFFSPSSVSFHKEIPGFLF
Sbjct: 1  MRPAPKFLAGTIFFFFFFFPISFGFWSLSFRPSAIVSHSSLSFFSPSSVSFHKEIPGFLF 60

Query: 61 NFIWVLMLFPI 72
          NFIWVLMLFPI
Sbjct: 61 NFIWVLMLFPI 71

[Close]
BLAST of CSPI04G16640.1 vs. NCBI nr
Match: KGN54457.1 (hypothetical protein Csa_012921 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 2.4e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MRPAPKFLAGTIFFFFFFFPISFGFWSLSFRPSAIVSHSSLSFFSPSSVSFHKEIPGFLF 60
          MRPAPKFLAGTIFFFFFFFPISFGFWSLSFRPSAIVSHSSLSFFSPSSVSFHKEIPGFLF
Sbjct: 1  MRPAPKFLAGTIFFFFFFFPISFGFWSLSFRPSAIVSHSSLSFFSPSSVSFHKEIPGFLF 60

Query: 61 NFIWVLMLFPI 72
          NFIWVLMLFPI
Sbjct: 61 NFIWVLMLFPI 71

The following BLAST results are available for this feature:
BLAST of CSPI04G16640.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G16640.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1K01.2e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G334680 PE=4 SV=1[more]
BLAST of CSPI04G16640.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54457.12.4e-30100.00hypothetical protein Csa_012921 [Cucumis sativus][more]
BLAST of CSPI04G16640.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI04G16640CSPI04G16640gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G16640.1.cds1CSPI04G16640.1.cds1CDS
CSPI04G16640.1.cds2CSPI04G16640.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI04G16640.1CSPI04G16640.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane