CSPI03G47660.3 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI03G47660.3
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	heavy metal-associated isoprenylated plant protein 39
Location	Chr3: 40629715 .. 40630922 (+)
Sequence length	907
RNA-Seq Expression	CSPI03G47660.3
Synteny	CSPI03G47660.3

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTATTGAAAACGAATGTAATAATCCCTTCCCTTCTTCTCTCTCCTTTTTGGATTTTTAGCCCTTCGAAATCCCGCTGTTAGATAGCGACTTTCCCCTCTCCCATTTCCATAAAGCCTTTTCTCTTTTTCCCTTCCTCTCTTCTCATTTTTCACATTTCAGTTTTCATCTCTCTTTTCCCCTTTCACTAAAATGGCTCAGGTCTCTTCTTCTTCCCTTTTTTCTCTCTCTCTAATTTCTCTCTAACTACTCATAATCAGATTTTACATGTTCTCTGTCAATCACTGACTCCAATGGATTTGATTTTGTGTTTGGATTCGGTATCAGAAAGTTGTGCTGAAGGTGATGACGATGACAGACGAGAAGACGAAGCAGAAAGCAATCGAAGCTGCAGCAGACATCTACGGTTAGTTGGAGATTTAATTTAATTTTGTGATAGATGTGGGTAATTAATAGTGGAAAATGGATTCGCTTTTTGTTTTGGATTATTATTATTATAGGATAAAGGAAGAGTGTGGGTTAGAAATTGTGTTTGGATAATGATGATATTAGGTGTTGATTCGATCGCGGCGGATCTGAAGGATCAGAAATTGACGGTGATAGGATCGATGGACGCGGTTGCGATTGTGAAGAAATTGAAGAAAGTAGGTAAAGTGGATATAATATCAGTCGGACCTGCGAAGGAAGAGAAGAAAGAAGAGAAGAAAGAGGAAAAGAAGGATGAGAAAAAAGATGAGAAGAAAGAGGAGCCCAAGAAAGAGGAGCCCAAGAAAGAGGAAAAAAAGTAAAATTATTCATGTTATTACAAAAAAAAAAAAAAAAAAAAAACTTACAATTCCTTCTTTCAATTTTGAGAATATTCTAATTTAAATACTCATCATTTTCATAATATCAGAAACACCATATATATATAAAGTCAAGAACCTACCTTTCTACTTTCTATCCCTCAATTTCATTGTACAAATAATCCATTAATTACATTTTTCTATCTTCTTCTTCTTCATCTTCTTCTTATTACTATTTCATATGAAGCATATGTATGAATTATGAATTATGATAGTCCTTTAATAAAAAAGCTACTTCTACTTTTAAAGAAAAAAAGAATCAATCATGTTTTCAATGCTGGACCGCGTTTCAAGTCCACATGTCTCTCCTTTTGTCTAACCATAGCAGGCTGGCTACCCCGTGGAATCTGTTTATTGGCTGCC

mRNA sequence

CATTATTGAAAACGAATGTAATAATCCCTTCCCTTCTTCTCTCTCCTTTTTGGATTTTTAGCCCTTCGAAATCCCGCTGTTAGATAGCGACTTTCCCCTCTCCCATTTCCATAAAGCCTTTTCTCTTTTTCCCTTCCTCTCTTCTCATTTTTCACATTTCAGTTTTCATCTCTCTTTTCCCCTTTCACTAAAATGGCTCAGAAAGTTGTGCTGAAGGTGATGACGATGACAGACGAGAAGACGAAGCAGAAAGCAATCGAAGCTGCAGCAGACATCTACGGATCAGAAATTGACGGTGATAGGATCGATGGACGCGGTTGCGATTGTGAAGAAATTGAAGAAAGTAGGTAAAGTGGATATAATATCAGTCGGACCTGCGAAGGAAGAGAAGAAAGAAGAGAAGAAAGAGGAAAAGAAGGATGAGAAAAAAGATGAGAAGAAAGAGGAGCCCAAGAAAGAGGAGCCCAAGAAAGAGGAAAAAAAGTAAAATTATTCATGTTATTACAAAAAAAAAAAAAAAAAAAAAACTTACAATTCCTTCTTTCAATTTTGAGAATATTCTAATTTAAATACTCATCATTTTCATAATATCAGAAACACCATATATATATAAAGTCAAGAACCTACCTTTCTACTTTCTATCCCTCAATTTCATTGTACAAATAATCCATTAATTACATTTTTCTATCTTCTTCTTCTTCATCTTCTTCTTATTACTATTTCATATGAAGCATATGTATGAATTATGAATTATGATAGTCCTTTAATAAAAAAGCTACTTCTACTTTTAAAGAAAAAAAGAATCAATCATGTTTTCAATGCTGGACCGCGTTTCAAGTCCACATGTCTCTCCTTTTGTCTAACCATAGCAGGCTGGCTACCCCGTGGAATCTGTTTATTGGCTGCC

Coding sequence (CDS)

ATGGACGCGGTTGCGATTGTGAAGAAATTGAAGAAAGTAGGTAAAGTGGATATAATATCAGTCGGACCTGCGAAGGAAGAGAAGAAAGAAGAGAAGAAAGAGGAAAAGAAGGATGAGAAAAAAGATGAGAAGAAAGAGGAGCCCAAGAAAGAGGAGCCCAAGAAAGAGGAAAAAAAGTAA

Protein sequence

MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEEPKKEEKK*

Homology

[Close]

BLAST of CSPI03G47660.3 vs. ExPASy TrEMBL
Match: A0A0A0LFC9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G914040 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-13
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEEPKKEEKK 60
          MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEEPKKEEKK
Sbjct: 24 MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEEPKKEEKK 82

[Close]

BLAST of CSPI03G47660.3 vs. ExPASy TrEMBL
Match: A0A5A7T6D5 (Synaptic vesicle membrane protein VAT-1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003640 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.5e-12
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1   MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEEPKKEEKK 60
           MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEE KK+EKK
Sbjct: 49  MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEEAKKDEKK 107

[Close]

BLAST of CSPI03G47660.3 vs. ExPASy TrEMBL
Match: A0A1S3CPW6 (synaptic vesicle membrane protein VAT-1 homolog OS=Cucumis melo OX=3656 GN=LOC103503459 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.5e-12
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1   MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEEPKKEEKK 60
           MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEE KK+EKK
Sbjct: 49  MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEEAKKDEKK 107

[Close]

BLAST of CSPI03G47660.3 vs. ExPASy TrEMBL
Match: A0A6D2I4I7 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS10637 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.2e-10
Identity = 50/55 (90.91%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEEPKK 56
           MDAVA+VKKLKKVGKVD+ISVGPAKEEKKEEKKEEKKDEKK+EKKEE K+EEPKK
Sbjct: 49  MDAVAVVKKLKKVGKVDLISVGPAKEEKKEEKKEEKKDEKKEEKKEEKKEEEPKK 103

[Close]

BLAST of CSPI03G47660.3 vs. ExPASy TrEMBL
Match: Q2HIM4 (At5g23760 OS=Arabidopsis thaliana OX=3702 GN=MRO11.20 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.4e-10
Identity = 49/55 (89.09%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEEPKK 56
           MDAVA+VKKLKKVGKVD+ISVGPAKEEKKEEKKEEKK+EKK+EKKEE K+EEPKK
Sbjct: 49  MDAVAVVKKLKKVGKVDLISVGPAKEEKKEEKKEEKKEEKKEEKKEEQKEEEPKK 103

[Close]

BLAST of CSPI03G47660.3 vs. NCBI nr
Match: XP_004148353.1 (heavy metal-associated isoprenylated plant protein 39 [Cucumis sativus] >KAE8651476.1 hypothetical protein Csa_001520 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 3.8e-13
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEEPKKEEKK 60
           MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEEPKKEEKK
Sbjct: 49  MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEEPKKEEKK 107

[Close]

BLAST of CSPI03G47660.3 vs. NCBI nr
Match: XP_008465871.1 (PREDICTED: synaptic vesicle membrane protein VAT-1 homolog [Cucumis melo] >KAA0038493.1 synaptic vesicle membrane protein VAT-1-like protein [Cucumis melo var. makuwa] >TYK31087.1 synaptic vesicle membrane protein VAT-1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 7.2e-12
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1   MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEEPKKEEKK 60
           MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEE KK+EKK
Sbjct: 49  MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEEAKKDEKK 107

[Close]

BLAST of CSPI03G47660.3 vs. NCBI nr
Match: CAA7023402.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 73.6 bits (179), Expect = 6.7e-10
Identity = 50/55 (90.91%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEEPKK 56
           MDAVA+VKKLKKVGKVD+ISVGPAKEEKKEEKKEEKKDEKK+EKKEE K+EEPKK
Sbjct: 49  MDAVAVVKKLKKVGKVDLISVGPAKEEKKEEKKEEKKDEKKEEKKEEKKEEEPKK 103

[Close]

BLAST of CSPI03G47660.3 vs. NCBI nr
Match: NP_001330215.1 (Copper transport protein family [Arabidopsis thaliana] >ANM68460.1 Copper transport protein family [Arabidopsis thaliana])

HSP 1 Score: 72.0 bits (175), Expect = 2.0e-09
Identity = 49/55 (89.09%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEEPKK 56
          MDAVA+VKKLKKVGKVD+ISVGPAKEEKKEEKKEEKK+EKK+EKKEE K+EEPKK
Sbjct: 38 MDAVAVVKKLKKVGKVDLISVGPAKEEKKEEKKEEKKEEKKEEKKEEQKEEEPKK 92

[Close]

BLAST of CSPI03G47660.3 vs. NCBI nr
Match: XP_027161768.1 (heavy metal-associated isoprenylated plant protein 39 [Coffea eugenioides])

HSP 1 Score: 72.0 bits (175), Expect = 2.0e-09
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1   MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKE---EPKKEE 60
           MDAVA+VKKLKK+GKVDIISVGPAKEEKKEEKKEEKK+EKK+EKKEEP KE   EPKKEE
Sbjct: 49  MDAVAVVKKLKKLGKVDIISVGPAKEEKKEEKKEEKKEEKKEEKKEEPPKEEKKEPKKEE 108

[Close]

BLAST of CSPI03G47660.3 vs. TAIR 10
Match: AT5G23760.1 (Copper transport protein family )

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-13
Identity = 49/55 (89.09%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   MDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEEPKK 56
           MDAVA+VKKLKKVGKVD+ISVGPAKEEKKEEKKEEKK+EKK+EKKEE K+EEPKK
Sbjct: 49  MDAVAVVKKLKKVGKVDLISVGPAKEEKKEEKKEEKKEEKKEEKKEEQKEEEPKK 103

The following BLAST results are available for this feature:

BLAST of CSPI03G47660.3 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G47660.3 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFC9	1.8e-13	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G914040 PE=4 SV=1	[more]
A0A5A7T6D5	3.5e-12	96.61	Synaptic vesicle membrane protein VAT-1-like protein OS=Cucumis melo var. makuwa...	[more]
A0A1S3CPW6	3.5e-12	96.61	synaptic vesicle membrane protein VAT-1 homolog OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6D2I4I7	3.2e-10	90.91	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS10637 ...	[more]
Q2HIM4	9.4e-10	89.09	At5g23760 OS=Arabidopsis thaliana OX=3702 GN=MRO11.20 PE=1 SV=1	[more]

BLAST of CSPI03G47660.3 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148353.1	3.8e-13	100.00	heavy metal-associated isoprenylated plant protein 39 [Cucumis sativus] >KAE8651...	[more]
XP_008465871.1	7.2e-12	96.61	PREDICTED: synaptic vesicle membrane protein VAT-1 homolog [Cucumis melo] >KAA00...	[more]
CAA7023402.1	6.7e-10	90.91	unnamed protein product [Microthlaspi erraticum]	[more]
NP_001330215.1	2.0e-09	89.09	Copper transport protein family [Arabidopsis thaliana] >ANM68460.1 Copper transp...	[more]
XP_027161768.1	2.0e-09	87.10	heavy metal-associated isoprenylated plant protein 39 [Coffea eugenioides]	[more]

BLAST of CSPI03G47660.3 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23760.1	1.8e-13	89.09	Copper transport protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 25..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..59
None	No IPR available	PANTHER	PTHR45811	COPPER TRANSPORT PROTEIN FAMILY-RELATED	coord: 1..55
None	No IPR available	PANTHER	PTHR45811:SF45	BNAA09G05140D PROTEIN	coord: 1..55

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G47660	CSPI03G47660	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G47660.3.utr5p1	CSPI03G47660.3.utr5p1	five_prime_UTR
CSPI03G47660.3.utr5p2	CSPI03G47660.3.utr5p2	five_prime_UTR
CSPI03G47660.3.utr5p3	CSPI03G47660.3.utr5p3	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G47660.3.cds3	CSPI03G47660.3.cds3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G47660.3.utr3p1	CSPI03G47660.3.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G47660.3	CSPI03G47660.3-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding