CSPI03G45570.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI03G45570.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Geranylgeranyl transferase type-2 subunit alpha
Location	Chr3: 38976377 .. 38976739 (+)
Sequence length	363
RNA-Seq Expression	CSPI03G45570.1
Synteny	CSPI03G45570.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCGTCGTACTCTACCTTCTTTATAGTGCGCTTCTTGCCAAATTACTGAGCAAAAAGGCCAGTGGAAAAGGTGTAGTGTTAGGTGAGGAATATGAACTCGTGCACCAAACTATTTTCACTGATCCGGATGATCAAAGTGGTTGGTTTTATCATCTTTGGCTTCTGGATCAAACGGTGAAAACGCATCTTCATCACCTTGTTTCTTCTTGGCCACCTCGTAGTCTTAATGTAGCATTATCACGAACTGGATGTTTAGATGATCACACTCTCTCTCATTTAGTAGTTTCCTTTCGGATTCAGGAAAATTACTCCTCATTCTTTACTTTGATCAACCTGTTCAAGGTGTCGACTCATCTTCAG

mRNA sequence

ATGTGCGTCGTACTCTACCTTCTTTATAGTGCGCTTCTTGCCAAATTACTGAGCAAAAAGGCCAGTGGAAAAGGTGTAGTGTTAGGTGAGGAATATGAACTCGTGCACCAAACTATTTTCACTGATCCGGATGATCAAAGTGGTTGGTTTTATCATCTTTGGCTTCTGGATCAAACGGTGAAAACGCATCTTCATCACCTTGTTTCTTCTTGGCCACCTCGTAGTCTTAATGTAGCATTATCACGAACTGGATGTTTAGATGATCACACTCTCTCTCATTTAGTAGTTTCCTTTCGGATTCAGGAAAATTACTCCTCATTCTTTACTTTGATCAACCTGTTCAAGGTGTCGACTCATCTTCAG

Coding sequence (CDS)

ATGTGCGTCGTACTCTACCTTCTTTATAGTGCGCTTCTTGCCAAATTACTGAGCAAAAAGGCCAGTGGAAAAGGTGTAGTGTTAGGTGAGGAATATGAACTCGTGCACCAAACTATTTTCACTGATCCGGATGATCAAAGTGGTTGGTTTTATCATCTTTGGCTTCTGGATCAAACGGTGAAAACGCATCTTCATCACCTTGTTTCTTCTTGGCCACCTCGTAGTCTTAATGTAGCATTATCACGAACTGGATGTTTAGATGATCACACTCTCTCTCATTTAGTAGTTTCCTTTCGGATTCAGGAAAATTACTCCTCATTCTTTACTTTGATCAACCTGTTCAAGGTGTCGACTCATCTTCAG

Protein sequence

MCVVLYLLYSALLAKLLSKKASGKGVVLGEEYELVHQTIFTDPDDQSGWFYHLWLLDQTVKTHLHHLVSSWPPRSLNVALSRTGCLDDHTLSHLVVSFRIQENYSSFFTLINLFKVSTHLQ

Homology

[Close]

BLAST of CSPI03G45570.1 vs. ExPASy Swiss-Prot
Match: Q8VYB7 (Geranylgeranyl transferase type-2 subunit alpha 1 OS=Arabidopsis thaliana OX=3702 GN=RGTA1 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.3e-18
Identity = 42/79 (53.16%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 10  SALLAKLLSKKASG--KGVVLGEEYELVHQTIFTDPDDQSGWFYHLWLLDQTVKTHLHHL 69
           S LL+ LL++ A G    + + EEY+ VH  IFT+PDDQSGWFYHLWLLDQT+      L
Sbjct: 182 SVLLSSLLAQNADGFMPNIKIPEEYDFVHSAIFTEPDDQSGWFYHLWLLDQTLNVETPLL 241

Query: 70  VSSWPPRSLNVALSRTGCL 87
            SSWP    ++ LS  GCL
Sbjct: 242 TSSWPSHGSSIILSGAGCL 260

[Close]

BLAST of CSPI03G45570.1 vs. ExPASy Swiss-Prot
Match: Q9FJ32 (Geranylgeranyl transferase type-2 subunit alpha 2 OS=Arabidopsis thaliana OX=3702 GN=RGTA2 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.4e-11
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 10  SALLAKLLSKKASG--KGVVLGEEYELVHQTIFTDPDDQSGWFYHLWLLDQTVKTHLHHL 69
           S L++ L++KKA G      +  E + VH  IFT  + QSGWFY+LWLLDQTVK  +   
Sbjct: 195 SVLVSSLVAKKADGFMPKETIRRELDYVHSAIFTLEEKQSGWFYYLWLLDQTVKMEIPLR 254

Query: 70  VSSWPPRSLNVALSRTGCLDDHTLSHLVVSF 99
            SSWP     + LS   C +  + +  + +F
Sbjct: 255 FSSWPSDGSIIILSGPDCFNASSSTTKLTTF 285

[Close]

BLAST of CSPI03G45570.1 vs. ExPASy Swiss-Prot
Match: O94412 (Geranylgeranyl transferase type-2 subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=bet4 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.4e-06
Identity = 22/52 (42.31%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 18  SKKASGKGVVLGEEYELVHQTIFTDPDDQSGWFYHLWLLDQTVKTHLHHLVS 70
           S+KA  K  +L +E +++HQ +FTDPDD S W YH WL+       +  L+S
Sbjct: 206 SQKALAK-QILEQELDMIHQAVFTDPDDSSVWIYHRWLMGHCNPNSMTPLIS 256

[Close]

BLAST of CSPI03G45570.1 vs. ExPASy Swiss-Prot
Match: Q5EA80 (Geranylgeranyl transferase type-2 subunit alpha OS=Bos taurus OX=9913 GN=RABGGTA PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.0e-04
Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 27  VLGEEYELVHQTIFTDPDDQSGWFYHLWLL 57
           VL +E ELV    FTDP+DQS WFYH WLL
Sbjct: 207 VLLKELELVQNAFFTDPNDQSAWFYHRWLL 236

[Close]

BLAST of CSPI03G45570.1 vs. ExPASy Swiss-Prot
Match: Q92696 (Geranylgeranyl transferase type-2 subunit alpha OS=Homo sapiens OX=9606 GN=RABGGTA PE=1 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 1.0e-04
Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 27  VLGEEYELVHQTIFTDPDDQSGWFYHLWLL 57
           VL +E ELV    FTDP+DQS WFYH WLL
Sbjct: 207 VLLKELELVQNAFFTDPNDQSAWFYHRWLL 236

[Close]

BLAST of CSPI03G45570.1 vs. ExPASy TrEMBL
Match: A0A0A0LE25 (Geranylgeranyl transferase type-2 subunit alpha OS=Cucumis sativus OX=3659 GN=Csa_3G892190 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.1e-56
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 10  SALLAKLLSKKASGKGVVLGEEYELVHQTIFTDPDDQSGWFYHLWLLDQTVKTHLHHLVS 69
           SALLAKLLSKKASGKGVVLGEEYELVHQTIFTDPDD+SGWFYHLWLLDQTVKTHLHHLVS
Sbjct: 125 SALLAKLLSKKASGKGVVLGEEYELVHQTIFTDPDDRSGWFYHLWLLDQTVKTHLHHLVS 184

Query: 70  SWPPRSLNVALSRTGCLDDHTLSHLVVSFRIQENYSSFFTLINLFKVSTHLQ 122
           SWPPRSLNVALSRTGCLDDHTLSHLVVSFRIQENYSSFFTLINLFK STHLQ
Sbjct: 185 SWPPRSLNVALSRTGCLDDHTLSHLVVSFRIQENYSSFFTLINLFKESTHLQ 236

[Close]

BLAST of CSPI03G45570.1 vs. ExPASy TrEMBL
Match: A0A5A7UAV7 (Geranylgeranyl transferase type-2 subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009440 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.7e-29
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 10  SALLAKLLSKKASG---KGVVLGEEYELVHQTIFTDPDDQSGWFYHLWLLDQTVKTHLHH 69
           SALLAKLL++KA G      VL EEYELVHQ IFTDPDDQSGWFYHLWLLDQTVKT+  +
Sbjct: 182 SALLAKLLNQKAEGYFPMEKVLNEEYELVHQAIFTDPDDQSGWFYHLWLLDQTVKTNPPY 241

Query: 70  LVSSWPPRSLNVALSRTGCLDDHTLS 93
           LVSSWPP S NVALSRTGCLD+HTLS
Sbjct: 242 LVSSWPPHSFNVALSRTGCLDNHTLS 267

[Close]

BLAST of CSPI03G45570.1 vs. ExPASy TrEMBL
Match: A0A5D3E6U6 (Geranylgeranyl transferase type-2 subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005630 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.7e-29
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 10  SALLAKLLSKKASGK---GVVLGEEYELVHQTIFTDPDDQSGWFYHLWLLDQTVKTHLHH 69
           S LLAKLL+KKA        VL EEYELVHQ IFTDPDDQSGWFYHLW LDQT+KT+L +
Sbjct: 154 SVLLAKLLNKKAENNFPVEKVLDEEYELVHQAIFTDPDDQSGWFYHLWPLDQTLKTNLPY 213

Query: 70  LVSSWPPRSLNVALSRTGCLDDHTLS 93
           LVSSWPPRSL+VALSRTGCLDDHTLS
Sbjct: 214 LVSSWPPRSLDVALSRTGCLDDHTLS 239

[Close]

BLAST of CSPI03G45570.1 vs. ExPASy TrEMBL
Match: A0A1S3AZP9 (geranylgeranyl transferase type-2 subunit alpha OS=Cucumis melo OX=3656 GN=LOC103484326 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.7e-29
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 10  SALLAKLLSKKASG---KGVVLGEEYELVHQTIFTDPDDQSGWFYHLWLLDQTVKTHLHH 69
           SALLAKLL++KA G      VL EEYELVHQ IFTDPDDQSGWFYHLWLLDQTVKT+  +
Sbjct: 182 SALLAKLLNQKAEGYFPMEKVLNEEYELVHQAIFTDPDDQSGWFYHLWLLDQTVKTNPPY 241

Query: 70  LVSSWPPRSLNVALSRTGCLDDHTLS 93
           LVSSWPP S NVALSRTGCLD+HTLS
Sbjct: 242 LVSSWPPHSFNVALSRTGCLDNHTLS 267

[Close]

BLAST of CSPI03G45570.1 vs. ExPASy TrEMBL
Match: A0A6J1C629 (geranylgeranyl transferase type-2 subunit alpha 1 OS=Momordica charantia OX=3673 GN=LOC111008311 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.4e-28
Identity = 68/88 (77.27%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 10  SALLAKLLSKKAS---GKGVVLGEEYELVHQTIFTDPDDQSGWFYHLWLLDQTVKTHLHH 69
           SALL KLL+KKA        VL EEY+LVHQ IFTDPDDQSGWFYHLWLLDQTVKT+   
Sbjct: 182 SALLGKLLNKKAECYFPVEKVLNEEYDLVHQAIFTDPDDQSGWFYHLWLLDQTVKTNAPS 241

Query: 70  LVSSWPPRSLNVALSRTGCLDDHTLSHL 95
           LVSSWPP S NVALSRTGCLDDHTLS L
Sbjct: 242 LVSSWPPHSYNVALSRTGCLDDHTLSPL 269

[Close]

BLAST of CSPI03G45570.1 vs. NCBI nr
Match: KAA0052504.1 (geranylgeranyl transferase type-2 subunit alpha [Cucumis melo var. makuwa] >TYK13320.1 geranylgeranyl transferase type-2 subunit alpha [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 3.4e-29
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 10  SALLAKLLSKKASG---KGVVLGEEYELVHQTIFTDPDDQSGWFYHLWLLDQTVKTHLHH 69
           SALLAKLL++KA G      VL EEYELVHQ IFTDPDDQSGWFYHLWLLDQTVKT+  +
Sbjct: 182 SALLAKLLNQKAEGYFPMEKVLNEEYELVHQAIFTDPDDQSGWFYHLWLLDQTVKTNPPY 241

Query: 70  LVSSWPPRSLNVALSRTGCLDDHTLS 93
           LVSSWPP S NVALSRTGCLD+HTLS
Sbjct: 242 LVSSWPPHSFNVALSRTGCLDNHTLS 267

[Close]

BLAST of CSPI03G45570.1 vs. NCBI nr
Match: XP_008439572.1 (PREDICTED: geranylgeranyl transferase type-2 subunit alpha [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 3.4e-29
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 10  SALLAKLLSKKASG---KGVVLGEEYELVHQTIFTDPDDQSGWFYHLWLLDQTVKTHLHH 69
           SALLAKLL++KA G      VL EEYELVHQ IFTDPDDQSGWFYHLWLLDQTVKT+  +
Sbjct: 182 SALLAKLLNQKAEGYFPMEKVLNEEYELVHQAIFTDPDDQSGWFYHLWLLDQTVKTNPPY 241

Query: 70  LVSSWPPRSLNVALSRTGCLDDHTLS 93
           LVSSWPP S NVALSRTGCLD+HTLS
Sbjct: 242 LVSSWPPHSFNVALSRTGCLDNHTLS 267

[Close]

BLAST of CSPI03G45570.1 vs. NCBI nr
Match: KAA0038661.1 (geranylgeranyl transferase type-2 subunit alpha [Cucumis melo var. makuwa] >TYK31271.1 geranylgeranyl transferase type-2 subunit alpha [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 3.4e-29
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 10  SALLAKLLSKKASGK---GVVLGEEYELVHQTIFTDPDDQSGWFYHLWLLDQTVKTHLHH 69
           S LLAKLL+KKA        VL EEYELVHQ IFTDPDDQSGWFYHLW LDQT+KT+L +
Sbjct: 154 SVLLAKLLNKKAENNFPVEKVLDEEYELVHQAIFTDPDDQSGWFYHLWPLDQTLKTNLPY 213

Query: 70  LVSSWPPRSLNVALSRTGCLDDHTLS 93
           LVSSWPPRSL+VALSRTGCLDDHTLS
Sbjct: 214 LVSSWPPRSLDVALSRTGCLDDHTLS 239

[Close]

BLAST of CSPI03G45570.1 vs. NCBI nr
Match: XP_022136662.1 (geranylgeranyl transferase type-2 subunit alpha 1 [Momordica charantia])

HSP 1 Score: 135.6 bits (340), Expect = 2.9e-28
Identity = 68/88 (77.27%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 10  SALLAKLLSKKAS---GKGVVLGEEYELVHQTIFTDPDDQSGWFYHLWLLDQTVKTHLHH 69
           SALL KLL+KKA        VL EEY+LVHQ IFTDPDDQSGWFYHLWLLDQTVKT+   
Sbjct: 182 SALLGKLLNKKAECYFPVEKVLNEEYDLVHQAIFTDPDDQSGWFYHLWLLDQTVKTNAPS 241

Query: 70  LVSSWPPRSLNVALSRTGCLDDHTLSHL 95
           LVSSWPP S NVALSRTGCLDDHTLS L
Sbjct: 242 LVSSWPPHSYNVALSRTGCLDDHTLSPL 269

[Close]

BLAST of CSPI03G45570.1 vs. NCBI nr
Match: XP_038898631.1 (geranylgeranyl transferase type-2 subunit alpha 1 isoform X1 [Benincasa hispida] >XP_038898632.1 geranylgeranyl transferase type-2 subunit alpha 1 isoform X1 [Benincasa hispida] >XP_038898633.1 geranylgeranyl transferase type-2 subunit alpha 1 isoform X1 [Benincasa hispida] >XP_038898634.1 geranylgeranyl transferase type-2 subunit alpha 1 isoform X1 [Benincasa hispida] >XP_038898637.1 geranylgeranyl transferase type-2 subunit alpha 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-27
Identity = 66/86 (76.74%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 10  SALLAKLLSKKASG---KGVVLGEEYELVHQTIFTDPDDQSGWFYHLWLLDQTVKTHLHH 69
           S LLAKLL++KA G      VL EEYELVHQ IFTDPDDQSGWFYHLWLLDQTVKT+  +
Sbjct: 182 SVLLAKLLNQKAEGYFPVERVLNEEYELVHQAIFTDPDDQSGWFYHLWLLDQTVKTNPPY 241

Query: 70  LVSSWPPRSLNVALSRTGCLDDHTLS 93
           LVSSWPP S NVALSRTGCLDD  LS
Sbjct: 242 LVSSWPPHSFNVALSRTGCLDDQILS 267

[Close]

BLAST of CSPI03G45570.1 vs. TAIR 10
Match: AT4G24490.1 (RAB geranylgeranyl transferase alpha subunit 1 )

HSP 1 Score: 91.7 bits (226), Expect = 4.5e-19
Identity = 42/79 (53.16%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 10  SALLAKLLSKKASG--KGVVLGEEYELVHQTIFTDPDDQSGWFYHLWLLDQTVKTHLHHL 69
           S LL+ LL++ A G    + + EEY+ VH  IFT+PDDQSGWFYHLWLLDQT+      L
Sbjct: 182 SVLLSSLLAQNADGFMPNIKIPEEYDFVHSAIFTEPDDQSGWFYHLWLLDQTLNVETPLL 241

Query: 70  VSSWPPRSLNVALSRTGCL 87
            SSWP    ++ LS  GCL
Sbjct: 242 TSSWPSHGSSIILSGAGCL 260

[Close]

BLAST of CSPI03G45570.1 vs. TAIR 10
Match: AT4G24490.2 (RAB geranylgeranyl transferase alpha subunit 1 )

HSP 1 Score: 91.7 bits (226), Expect = 4.5e-19
Identity = 42/79 (53.16%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 10  SALLAKLLSKKASG--KGVVLGEEYELVHQTIFTDPDDQSGWFYHLWLLDQTVKTHLHHL 69
           S LL+ LL++ A G    + + EEY+ VH  IFT+PDDQSGWFYHLWLLDQT+      L
Sbjct: 182 SVLLSSLLAQNADGFMPNIKIPEEYDFVHSAIFTEPDDQSGWFYHLWLLDQTLNVETPLL 241

Query: 70  VSSWPPRSLNVALSRTGCL 87
            SSWP    ++ LS  GCL
Sbjct: 242 TSSWPSHGSSIILSGAGCL 260

[Close]

BLAST of CSPI03G45570.1 vs. TAIR 10
Match: AT5G41820.1 (RAB geranylgeranyl transferase alpha subunit 2 )

HSP 1 Score: 68.2 bits (165), Expect = 5.3e-12
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 10  SALLAKLLSKKASG--KGVVLGEEYELVHQTIFTDPDDQSGWFYHLWLLDQTVKTHLHHL 69
           S L++ L++KKA G      +  E + VH  IFT  + QSGWFY+LWLLDQTVK  +   
Sbjct: 195 SVLVSSLVAKKADGFMPKETIRRELDYVHSAIFTLEEKQSGWFYYLWLLDQTVKMEIPLR 254

Query: 70  VSSWPPRSLNVALSRTGCLDDHTLSHLVVSF 99
            SSWP     + LS   C +  + +  + +F
Sbjct: 255 FSSWPSDGSIIILSGPDCFNASSSTTKLTTF 285

The following BLAST results are available for this feature:

BLAST of CSPI03G45570.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYB7	6.3e-18	53.16	Geranylgeranyl transferase type-2 subunit alpha 1 OS=Arabidopsis thaliana OX=370...	[more]
Q9FJ32	7.4e-11	39.56	Geranylgeranyl transferase type-2 subunit alpha 2 OS=Arabidopsis thaliana OX=370...	[more]
O94412	9.4e-06	42.31	Geranylgeranyl transferase type-2 subunit alpha OS=Schizosaccharomyces pombe (st...	[more]
Q5EA80	1.0e-04	66.67	Geranylgeranyl transferase type-2 subunit alpha OS=Bos taurus OX=9913 GN=RABGGTA...	[more]
Q92696	1.0e-04	66.67	Geranylgeranyl transferase type-2 subunit alpha OS=Homo sapiens OX=9606 GN=RABGG...	[more]

BLAST of CSPI03G45570.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE25	2.1e-56	98.21	Geranylgeranyl transferase type-2 subunit alpha OS=Cucumis sativus OX=3659 GN=Cs...	[more]
A0A5A7UAV7	1.7e-29	79.07	Geranylgeranyl transferase type-2 subunit alpha OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3E6U6	1.7e-29	79.07	Geranylgeranyl transferase type-2 subunit alpha OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3AZP9	1.7e-29	79.07	geranylgeranyl transferase type-2 subunit alpha OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1C629	1.4e-28	77.27	geranylgeranyl transferase type-2 subunit alpha 1 OS=Momordica charantia OX=3673...	[more]

BLAST of CSPI03G45570.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052504.1	3.4e-29	79.07	geranylgeranyl transferase type-2 subunit alpha [Cucumis melo var. makuwa] >TYK1...	[more]
XP_008439572.1	3.4e-29	79.07	PREDICTED: geranylgeranyl transferase type-2 subunit alpha [Cucumis melo]	[more]
KAA0038661.1	3.4e-29	79.07	geranylgeranyl transferase type-2 subunit alpha [Cucumis melo var. makuwa] >TYK3...	[more]
XP_022136662.1	2.9e-28	77.27	geranylgeranyl transferase type-2 subunit alpha 1 [Momordica charantia]	[more]
XP_038898631.1	1.9e-27	76.74	geranylgeranyl transferase type-2 subunit alpha 1 isoform X1 [Benincasa hispida]...	[more]

BLAST of CSPI03G45570.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24490.1	4.5e-19	53.16	RAB geranylgeranyl transferase alpha subunit 1	[more]
AT4G24490.2	4.5e-19	53.16	RAB geranylgeranyl transferase alpha subunit 1	[more]
AT5G41820.1	5.3e-12	39.56	RAB geranylgeranyl transferase alpha subunit 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.40.1130		coord: 62..87 e-value: 5.6E-13 score: 50.5
None	No IPR available	GENE3D	1.25.40.120	Protein prenylyltransferase	coord: 10..61 e-value: 5.6E-13 score: 50.5
None	No IPR available	PANTHER	PTHR11129	PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT	coord: 10..93
None	No IPR available	PANTHER	PTHR11129:SF7	SUBFAMILY NOT NAMED	coord: 10..93
None	No IPR available	SUPERFAMILY	48439	Protein prenylyltransferase	coord: 25..62
IPR002088	Protein prenyltransferase, alpha subunit	PROSITE	PS51147	PFTA	coord: 27..61 score: 11.584791

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G45570	CSPI03G45570	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G45570.mrna.cds.1	CSPI03G45570.mrna.cds.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G45570.1	CSPI03G45570.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0018342	protein prenylation
biological_process	GO:0018344	protein geranylgeranylation
cellular_component	GO:0005968	Rab-protein geranylgeranyltransferase complex
molecular_function	GO:0008318	protein prenyltransferase activity
molecular_function	GO:0004663	Rab geranylgeranyltransferase activity