CSPI03G43670.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI03G43670.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	LYR motif-containing protein 2
Location	Chr3: 37492601 .. 37493467 (-)
Sequence length	601
RNA-Seq Expression	CSPI03G43670.1
Synteny	CSPI03G43670.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCCAGGCTACTCAAGATCAAAATCGGTCTTCTGTCGTTGAATCCTCAAAGAAATCGGAACCGAACGAGAGAAATGATTATACCTCCGATTGAATCAAGCATGGAATTCGCTTCACTTTAATCTGCACCATCAGTGTTATCCTCTTCATTTTGATCATTAAGGTAATTTCGTACATTCTCAAAGAAATTTACATTGTGCCCTAGCTTTTTCCTTTTTCGTTTTTACCAATTCATACAACTCTTGAAAGAATTAGTTCGATAATAAATCCTAACCTGCCTATGATTTCTGCGCTGAACTGTTTGGATTTGTGGTTAAAAATGACTGGTTTTGGCATAGGAAAGAGAGATCGCGATGGTTTTCTCCCATGATTTACGTGAATTTATTCTTCGAGCAAGAGTGTTGAAACTGTATAGACAGGGTTTAAGAACAGCTCGGAAAGCGCCTGTTGATGGTCGAGGTAAAGCTGTGTTTATTAATGGGATTTTGTAATGACTTTGTGTTGTGATTATTGAAATTTCATCTAATTGGATTAGATGGTAACAGATGAATTGAGGCATATGATGAGAGAAGAAATGGAGAAGAACAGAAAGTGTAATGATAGACAGAAAATAAGATTTTTGTTGAGCGAAGGAATAGAGCGATTGAAGCGTCTAGATGAGATGTTGGATATGCAAGGCCATTAGATTAGATAGAGAGCAGAGAGCTTTCTTTCTTTCTTTTACTCTGTATCATTTTGGAGTATTTAGAAAATTCCTTTTTGGATTCAGCCTTTTGAGTTATTATAATTTCGTACATTTTTTCTGATTCTCTTTCTCAGTAATTATTTCTGATTACGTACCTTTTTGTATGACATTTAAGAGAGGGAA

mRNA sequence

TGCCAGGCTACTCAAGATCAAAATCGGTCTTCTGTCGTTGAATCCTCAAAGAAATCGGAACCGAACGAGAGAAATGATTATACCTCCGATTGAATCAAGCATGGAATTCGCTTCACTTTAATCTGCACCATCAGTGTTATCCTCTTCATTTTGATCATTAAGAGAGATCGCGATGGTTTTCTCCCATGATTTACGTGAATTTATTCTTCGAGCAAGAGTGTTGAAACTGTATAGACAGGGTTTAAGAACAGCTCGGAAAGCGCCTGTTGATGGTCGAGATGAATTGAGGCATATGATGAGAGAAGAAATGGAGAAGAACAGAAAGTGTAATGATAGACAGAAAATAAGATTTTTGTTGAGCGAAGGAATAGAGCGATTGAAGCGTCTAGATGAGATGTTGGATATGCAAGGCCATTAGATTAGATAGAGAGCAGAGAGCTTTCTTTCTTTCTTTTACTCTGTATCATTTTGGAGTATTTAGAAAATTCCTTTTTGGATTCAGCCTTTTGAGTTATTATAATTTCGTACATTTTTTCTGATTCTCTTTCTCAGTAATTATTTCTGATTACGTACCTTTTTGTATGACATTTAAGAGAGGGAA

Coding sequence (CDS)

ATGGTTTTCTCCCATGATTTACGTGAATTTATTCTTCGAGCAAGAGTGTTGAAACTGTATAGACAGGGTTTAAGAACAGCTCGGAAAGCGCCTGTTGATGGTCGAGATGAATTGAGGCATATGATGAGAGAAGAAATGGAGAAGAACAGAAAGTGTAATGATAGACAGAAAATAAGATTTTTGTTGAGCGAAGGAATAGAGCGATTGAAGCGTCTAGATGAGATGTTGGATATGCAAGGCCATTAG

Protein sequence

MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRFLLSEGIERLKRLDEMLDMQGH*

Homology

[Close]

BLAST of CSPI03G43670.1 vs. ExPASy Swiss-Prot
Match: Q5RES3 (LYR motif-containing protein 2 OS=Pongo abelii OX=9601 GN=LYRM2 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.7e-04
Identity = 26/71 (36.62%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 7  LREFILRARVLKLYRQGLRTARKAPVDG-RDELRHMMREEMEKNRKCNDRQKIRFLLSEG 66
          L++F+ R +VL LYR+ L+T R+ P D  R  L+   REE ++N+   +   IR ++++G
Sbjct: 13 LKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFKRNKSATEEDTIRMMITQG 72

Query: 67 IERLKRLDEML 77
            +LK L++ L
Sbjct: 73 NMQLKELEKTL 83

[Close]

BLAST of CSPI03G43670.1 vs. ExPASy Swiss-Prot
Match: Q9NU23 (LYR motif-containing protein 2 OS=Homo sapiens OX=9606 GN=LYRM2 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.5e-04
Identity = 26/71 (36.62%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 7  LREFILRARVLKLYRQGLRTARKAPVDG-RDELRHMMREEMEKNRKCNDRQKIRFLLSEG 66
          L++F+ R +VL LYR+ L+T R+ P D  R  L+   REE  +N+   +   IR ++++G
Sbjct: 13 LKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFRRNKSATEEDTIRMMITQG 72

Query: 67 IERLKRLDEML 77
            +LK L++ L
Sbjct: 73 NMQLKELEKTL 83

[Close]

BLAST of CSPI03G43670.1 vs. ExPASy Swiss-Prot
Match: Q8R033 (LYR motif-containing protein 2 OS=Mus musculus OX=10090 GN=Lyrm2 PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 7.8e-04
Identity = 26/71 (36.62%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 7  LREFILRARVLKLYRQGLRTARKAPVDG-RDELRHMMREEMEKNRKCNDRQKIRFLLSEG 66
          L++F+ R +VL LYR+ LR  R+ P D  R  L+   REE ++N+   +   IR ++++G
Sbjct: 13 LKQFMRRQQVLLLYRKILRAIRQVPSDSDRKYLQDWAREEFKRNKSATEEDTIRMMITQG 72

Query: 67 IERLKRLDEML 77
            +LK L+  L
Sbjct: 73 NMQLKELERTL 83

[Close]

BLAST of CSPI03G43670.1 vs. ExPASy TrEMBL
Match: A0A5A7V7X8 (LYR motif-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001390 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEGIERLK+LDEMLDMQGH
Sbjct: 61 LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of CSPI03G43670.1 vs. ExPASy TrEMBL
Match: A0A1S3CRB8 (LYR motif-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103503854 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.8e-35
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQGLR ARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEGIERLK+LDEMLDMQGH
Sbjct: 61 LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of CSPI03G43670.1 vs. ExPASy TrEMBL
Match: A0A5D3E7B8 (LYR motif-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007760 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.8e-35
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQGLR ARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEGIERLK+LDEMLDMQGH
Sbjct: 61 LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of CSPI03G43670.1 vs. ExPASy TrEMBL
Match: A0A6J1F8N3 (uncharacterized protein LOC111443321 OS=Cucurbita moschata OX=3662 GN=LOC111443321 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.5e-26
Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MV + DL+EFILRARVLKLYRQ LRT RKAPV  R+ELRH +R+EME NR C+DRQK+RF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEGIERLKRLDEMLDMQGH
Sbjct: 61 LLSEGIERLKRLDEMLDMQGH 81

[Close]

BLAST of CSPI03G43670.1 vs. ExPASy TrEMBL
Match: A0A6J1IFA5 (uncharacterized protein LOC111476418 OS=Cucurbita maxima OX=3661 GN=LOC111476418 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.4e-26
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MV + DL+EFILRARVLKLYRQ LRT RKAPV  R+ELRH +R+EME NR C+DRQKIRF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRSCSDRQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEG ERLKRLDEMLDMQGH
Sbjct: 61 LLSEGRERLKRLDEMLDMQGH 81

[Close]

BLAST of CSPI03G43670.1 vs. NCBI nr
Match: XP_004136367.1 (LYR motif-containing protein 2 [Cucumis sativus] >XP_011652458.1 LYR motif-containing protein 2 [Cucumis sativus] >KAE8651352.1 hypothetical protein Csa_000719 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 9.7e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEGIERLKRLDEMLDMQGH
Sbjct: 61 LLSEGIERLKRLDEMLDMQGH 81

[Close]

BLAST of CSPI03G43670.1 vs. NCBI nr
Match: KAA0063314.1 (LYR motif-containing protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 2.8e-35
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEGIERLK+LDEMLDMQGH
Sbjct: 61 LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of CSPI03G43670.1 vs. NCBI nr
Match: XP_008466455.1 (PREDICTED: LYR motif-containing protein 2 [Cucumis melo] >XP_008466456.1 PREDICTED: LYR motif-containing protein 2 [Cucumis melo] >TYK31461.1 LYR motif-containing protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 1.4e-34
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MVFSHDLREFILRARVLKLYRQGLR ARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEGIERLK+LDEMLDMQGH
Sbjct: 61 LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of CSPI03G43670.1 vs. NCBI nr
Match: XP_023535371.1 (uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo] >XP_023535372.1 uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.0 bits (323), Expect = 1.8e-26
Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MV + DL+EFILRARVLKLYRQ LRT RKAPV  R+ELRH +R+EME NR C+DRQK+RF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRSCSDRQKVRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEGIERLKRLDEMLDMQGH
Sbjct: 61 LLSEGIERLKRLDEMLDMQGH 81

[Close]

BLAST of CSPI03G43670.1 vs. NCBI nr
Match: XP_022936861.1 (uncharacterized protein LOC111443321 [Cucurbita moschata] >XP_022936862.1 uncharacterized protein LOC111443321 [Cucurbita moschata])

HSP 1 Score: 128.3 bits (321), Expect = 3.1e-26
Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60
          MV + DL+EFILRARVLKLYRQ LRT RKAPV  R+ELRH +R+EME NR C+DRQK+RF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEGIERLKRLDEMLDMQGH
Sbjct: 61 LLSEGIERLKRLDEMLDMQGH 81

[Close]

BLAST of CSPI03G43670.1 vs. TAIR 10
Match: AT1G76065.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-24
Identity = 54/76 (71.05%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 6  DLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRFLLSEG 65
          DL+ FILRARVLKLYRQ L+ A +APV  R EL+  +R+EMEKNR CND+QKIR+L+SEG
Sbjct: 5  DLQSFILRARVLKLYRQALKIAHRAPVHVRGELKQTVRQEMEKNRDCNDKQKIRYLISEG 64

Query: 66 IERLKRLDEMLDMQGH 82
          +ER+K LDEMLDMQGH
Sbjct: 65 LERIKGLDEMLDMQGH 80

The following BLAST results are available for this feature:

BLAST of CSPI03G43670.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5RES3	2.7e-04	36.62	LYR motif-containing protein 2 OS=Pongo abelii OX=9601 GN=LYRM2 PE=3 SV=1	[more]
Q9NU23	3.5e-04	36.62	LYR motif-containing protein 2 OS=Homo sapiens OX=9606 GN=LYRM2 PE=1 SV=1	[more]
Q8R033	7.8e-04	36.62	LYR motif-containing protein 2 OS=Mus musculus OX=10090 GN=Lyrm2 PE=3 SV=1	[more]

BLAST of CSPI03G43670.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V7X8	1.4e-35	98.77	LYR motif-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3CRB8	6.8e-35	97.53	LYR motif-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103503854 PE=4 SV=1	[more]
A0A5D3E7B8	6.8e-35	97.53	LYR motif-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1F8N3	1.5e-26	80.25	uncharacterized protein LOC111443321 OS=Cucurbita moschata OX=3662 GN=LOC1114433...	[more]
A0A6J1IFA5	4.4e-26	80.25	uncharacterized protein LOC111476418 OS=Cucurbita maxima OX=3661 GN=LOC111476418...	[more]

BLAST of CSPI03G43670.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136367.1	9.7e-36	100.00	LYR motif-containing protein 2 [Cucumis sativus] >XP_011652458.1 LYR motif-conta...	[more]
KAA0063314.1	2.8e-35	98.77	LYR motif-containing protein 2 [Cucumis melo var. makuwa]	[more]
XP_008466455.1	1.4e-34	97.53	PREDICTED: LYR motif-containing protein 2 [Cucumis melo] >XP_008466456.1 PREDICT...	[more]
XP_023535371.1	1.8e-26	80.25	uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo] >XP_023535372....	[more]
XP_022936861.1	3.1e-26	80.25	uncharacterized protein LOC111443321 [Cucurbita moschata] >XP_022936862.1 unchar...	[more]

BLAST of CSPI03G43670.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76065.1	1.4e-24	71.05	LYR family of Fe/S cluster biogenesis protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 15..70 e-value: 5.4E-16 score: 58.4
None	No IPR available	PANTHER	PTHR13675	LYR MOTIF-CONTAINING PROTEIN 2	coord: 3..81
None	No IPR available	PANTHER	PTHR13675:SF0	LYR MOTIF-CONTAINING PROTEIN 2	coord: 3..81

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G43670	CSPI03G43670	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G43670.1.utr3p1	CSPI03G43670.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G43670.1.cds3	CSPI03G43670.1.cds3	CDS
CSPI03G43670.1.cds2	CSPI03G43670.1.cds2	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G43670.1.utr5p2	CSPI03G43670.1.utr5p2	five_prime_UTR
CSPI03G43670.1.utr5p1	CSPI03G43670.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G43670.1	CSPI03G43670.1-protein	polypeptide