CSPI03G36850.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI03G36850.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 31979388 .. 31980321 (+)
Sequence length	934
RNA-Seq Expression	CSPI03G36850.1
Synteny	CSPI03G36850.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAAGGGGTGAATAATATAAATGCAAATAAACAACAGAGGAAGGAAATGTATTTCATTAGATAAAATTTTCTCTCGGCATTGTATTGGTTTTATTTTTCTTATTTTATGTGATGATGAGTGAGGACAGTTGTTGCAAAGCGAAGATCAGAAACAAAGGCAGCGACGAACATTCTCCCATAGTGTTGTCGTTGTTGGACGAAAGATTTGAAGGGGGAAAAGGTGTTTTTATAAAAATGCAAAAGACAGAGAGATTAGAGATTGAAGATCCAGAAAGTCCAAGATTATTAAGAAAAGAAATTACTATGAACAGTGCTGCAGACTACATCAGCAACGGCAGCGACGTACATTCTCCAACAGTGTCCTCCTTGTTGTTGGCAGAGATATTTGAAGGAGAAAATGATGTTTTTCTAAAAATGCAAAAGACAAAGAGATTAGAGAGCGAAGATCAAGAAAGTGCAAGATTATTAGGAAAAGAAATTACCAAGAAGAGTGCAAACAAAGGCAACGTCGGCAACGACGGAGACGTAAATTCTCCGACATTGTCGTCGTTGTCTGAGGAGATGATATTATCTGAAGGGGAAAATGATGTATTGCAAAAGATGCAAAAGAGATTAAAGAGTGAAGACCAAGAAAGTCCAAGAATAATAATAACAATAACAGAAAGCAAGAAGAAGAGTGAAAAAGAAGAAACTAAAGAAAGTTTGGAAAATAATTCAGAAATAATGGGGTGGATTCCAGGGATAGAGATACCAGGACCAATACCTGATATTGATCCCATTATTCAGCAGCAATTCAATCTTCATACAATCTTGGATGATCCATTCCTTGATGATTGATTCAATGTAACTACATAATAATATTCAATTCCTTGATAAAAACTTTATTAATTACATGATTGTTAGTATGTTTCATCACAAACCCATAAGAGTTAC

mRNA sequence

GTGAAGGGGTGAATAATATAAATGCAAATAAACAACAGAGGAAGGAAATGTATTTCATTAGATAAAATTTTCTCTCGGCATTGTATTGGTTTTATTTTTCTTATTTTATGTGATGATGAGTGAGGACAGTTGTTGCAAAGCGAAGATCAGAAACAAAGGCAGCGACGAACATTCTCCCATAGTGTTGTCGTTGTTGGACGAAAGATTTGAAGGGGGAAAAGGTGTTTTTATAAAAATGCAAAAGACAGAGAGATTAGAGATTGAAGATCCAGAAAGTCCAAGATTATTAAGAAAAGAAATTACTATGAACAGTGCTGCAGACTACATCAGCAACGGCAGCGACGTACATTCTCCAACAGTGTCCTCCTTGTTGTTGGCAGAGATATTTGAAGGAGAAAATGATGTTTTTCTAAAAATGCAAAAGACAAAGAGATTAGAGAGCGAAGATCAAGAAAGTGCAAGATTATTAGGAAAAGAAATTACCAAGAAGAGTGCAAACAAAGGCAACGTCGGCAACGACGGAGACGTAAATTCTCCGACATTGTCGTCGTTGTCTGAGGAGATGATATTATCTGAAGGGGAAAATGATGTATTGCAAAAGATGCAAAAGAGATTAAAGAGTGAAGACCAAGAAAGTCCAAGAATAATAATAACAATAACAGAAAGCAAGAAGAAGAGTGAAAAAGAAGAAACTAAAGAAAGTTTGGAAAATAATTCAGAAATAATGGGGTGGATTCCAGGGATAGAGATACCAGGACCAATACCTGATATTGATCCCATTATTCAGCAGCAATTCAATCTTCATACAATCTTGGATGATCCATTCCTTGATGATTGATTCAATGTAACTACATAATAATATTCAATTCCTTGATAAAAACTTTATTAATTACATGATTGTTAGTATGTTTCATCACAAACCCATAAGAGTTAC

Coding sequence (CDS)

ATGATGAGTGAGGACAGTTGTTGCAAAGCGAAGATCAGAAACAAAGGCAGCGACGAACATTCTCCCATAGTGTTGTCGTTGTTGGACGAAAGATTTGAAGGGGGAAAAGGTGTTTTTATAAAAATGCAAAAGACAGAGAGATTAGAGATTGAAGATCCAGAAAGTCCAAGATTATTAAGAAAAGAAATTACTATGAACAGTGCTGCAGACTACATCAGCAACGGCAGCGACGTACATTCTCCAACAGTGTCCTCCTTGTTGTTGGCAGAGATATTTGAAGGAGAAAATGATGTTTTTCTAAAAATGCAAAAGACAAAGAGATTAGAGAGCGAAGATCAAGAAAGTGCAAGATTATTAGGAAAAGAAATTACCAAGAAGAGTGCAAACAAAGGCAACGTCGGCAACGACGGAGACGTAAATTCTCCGACATTGTCGTCGTTGTCTGAGGAGATGATATTATCTGAAGGGGAAAATGATGTATTGCAAAAGATGCAAAAGAGATTAAAGAGTGAAGACCAAGAAAGTCCAAGAATAATAATAACAATAACAGAAAGCAAGAAGAAGAGTGAAAAAGAAGAAACTAAAGAAAGTTTGGAAAATAATTCAGAAATAATGGGGTGGATTCCAGGGATAGAGATACCAGGACCAATACCTGATATTGATCCCATTATTCAGCAGCAATTCAATCTTCATACAATCTTGGATGATCCATTCCTTGATGATTGA

Protein sequence

MMSEDSCCKAKIRNKGSDEHSPIVLSLLDERFEGGKGVFIKMQKTERLEIEDPESPRLLRKEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLGKEITKKSANKGNVGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIIITITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLDD*

Homology

[Close]

BLAST of CSPI03G36850.1 vs. ExPASy TrEMBL
Match: A0A0A0LEJ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812110 PE=4 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 1.2e-124
Identity = 236/241 (97.93%), Postives = 239/241 (99.17%), Query Frame = 0


Query: 1   MMSEDSCCKAKIRNKGSDEHSPIVLSLLDERFEGGKGVFIKMQKTERLEIEDPESPRLLR 60
           MMSED+CCKAKIRNKGSDEHSPIVLSLLDERFEGG GVFIKMQKTERLEIEDPESPRLLR
Sbjct: 1   MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLR 60

Query: 61  KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG 120
           KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG
Sbjct: 61  KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG 120

Query: 121 KEITKKSANKGNVGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII 180
           KEITKKSAN GN+GNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII
Sbjct: 121 KEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII 180

Query: 181 TITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD 240
           +ITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD
Sbjct: 181 SITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD 240

Query: 241 D 242
           D
Sbjct: 241 D 241

[Close]

BLAST of CSPI03G36850.1 vs. ExPASy TrEMBL
Match: A0A5D3DPL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005790 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 8.9e-91
Identity = 201/303 (66.34%), Postives = 221/303 (72.94%), Query Frame = 0


Query: 2   MSEDSCCKAKIRNKGSDEHSPIVLSLLDERFEGGKGVFIKMQKTERLEIEDPESPRLLRK 61
           MSED+CCKAK RNKGSDEHSPIVLSLLDERF+GG  VFIKM+K +RLEIED ES RLLRK
Sbjct: 1   MSEDNCCKAKNRNKGSDEHSPIVLSLLDERFDGGNDVFIKMEKKKRLEIEDLESSRLLRK 60

Query: 62  EITMNSAADYISNGSD-------------------------------------------- 121
           EIT  SA  +ISNGSD                                            
Sbjct: 61  EITTKSADHHISNGSDVHSPALSSLLKEISKRENDVLLNTQKTNRLEIEKDEERPRLFIK 120

Query: 122 -----------------VHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG 181
                            VHSPTVSSLLL EIFEGENDVFLK+QK +RLESED+E+ARLLG
Sbjct: 121 KFTKKSANKDYVSNDGEVHSPTVSSLLLDEIFEGENDVFLKIQKAQRLESEDEENARLLG 180

Query: 182 KEITKK-SANKGNVGNDG-DVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRI 241
           K+ITKK S NKG+V ND  DV+SPTLSSLS E+++SEGENDVLQKMQKRL+SEDQESPR 
Sbjct: 181 KDITKKISTNKGHVSNDAKDVDSPTLSSLS-EVLISEGENDVLQKMQKRLESEDQESPR- 240

[Close]

BLAST of CSPI03G36850.1 vs. NCBI nr
Match: KGN59339.1 (hypothetical protein Csa_002297 [Cucumis sativus])

HSP 1 Score: 455.7 bits (1171), Expect = 2.5e-124
Identity = 236/241 (97.93%), Postives = 239/241 (99.17%), Query Frame = 0


Query: 1   MMSEDSCCKAKIRNKGSDEHSPIVLSLLDERFEGGKGVFIKMQKTERLEIEDPESPRLLR 60
           MMSED+CCKAKIRNKGSDEHSPIVLSLLDERFEGG GVFIKMQKTERLEIEDPESPRLLR
Sbjct: 1   MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLR 60

Query: 61  KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG 120
           KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG
Sbjct: 61  KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG 120

Query: 121 KEITKKSANKGNVGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII 180
           KEITKKSAN GN+GNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII
Sbjct: 121 KEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII 180

Query: 181 TITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD 240
           +ITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD
Sbjct: 181 SITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD 240

Query: 241 D 242
           D
Sbjct: 241 D 241

[Close]

BLAST of CSPI03G36850.1 vs. NCBI nr
Match: TYK25435.1 (hypothetical protein E5676_scaffold352G005790 [Cucumis melo var. makuwa])

HSP 1 Score: 343.2 bits (879), Expect = 1.8e-90
Identity = 201/303 (66.34%), Postives = 221/303 (72.94%), Query Frame = 0


Query: 2   MSEDSCCKAKIRNKGSDEHSPIVLSLLDERFEGGKGVFIKMQKTERLEIEDPESPRLLRK 61
           MSED+CCKAK RNKGSDEHSPIVLSLLDERF+GG  VFIKM+K +RLEIED ES RLLRK
Sbjct: 1   MSEDNCCKAKNRNKGSDEHSPIVLSLLDERFDGGNDVFIKMEKKKRLEIEDLESSRLLRK 60

Query: 62  EITMNSAADYISNGSD-------------------------------------------- 121
           EIT  SA  +ISNGSD                                            
Sbjct: 61  EITTKSADHHISNGSDVHSPALSSLLKEISKRENDVLLNTQKTNRLEIEKDEERPRLFIK 120

Query: 122 -----------------VHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG 181
                            VHSPTVSSLLL EIFEGENDVFLK+QK +RLESED+E+ARLLG
Sbjct: 121 KFTKKSANKDYVSNDGEVHSPTVSSLLLDEIFEGENDVFLKIQKAQRLESEDEENARLLG 180

Query: 182 KEITKK-SANKGNVGNDG-DVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRI 241
           K+ITKK S NKG+V ND  DV+SPTLSSLS E+++SEGENDVLQKMQKRL+SEDQESPR 
Sbjct: 181 KDITKKISTNKGHVSNDAKDVDSPTLSSLS-EVLISEGENDVLQKMQKRLESEDQESPR- 240

The following BLAST results are available for this feature:

BLAST of CSPI03G36850.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G36850.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEJ7	1.2e-124	97.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812110 PE=4 SV=1	[more]
A0A5D3DPL9	8.9e-91	66.34	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CSPI03G36850.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59339.1	2.5e-124	97.93	hypothetical protein Csa_002297 [Cucumis sativus]	[more]
TYK25435.1	1.8e-90	66.34	hypothetical protein E5676_scaffold352G005790 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI03G36850.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G36850	CSPI03G36850	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G36850.1.utr5p1	CSPI03G36850.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G36850.1.cds1	CSPI03G36850.1.cds1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G36850.1.utr3p1	CSPI03G36850.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G36850.1	CSPI03G36850.1-protein	polypeptide