CSPI03G36200.2 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI03G36200.2
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	60S ribosomal protein L21
Location	Chr3: 31534736 .. 31535836 (+)
Sequence length	845
RNA-Seq Expression	CSPI03G36200.2
Synteny	CSPI03G36200.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAACCTAGCCCTCGTCACTATACAAATCTGAATGAACTAGGCTTTCTTCATTTTGTGAACGAGTGTGAGAGAAAGTTCCTCCTGCCCCAATCATGCCGGCCGGCCATGGACTTCGATCCCGTACCAGAGACCTCTTCGCCAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTGACTACCTACTTGAGGACGTACAAAATCGGTGATTATGTGGATATCAAGGTGAACGGCGCCGTCCACAAGGGTATGCCTCATAAATTTTATCATGGTCGCACGGGTCAGGTATGGAATGTTACAAAGCGCGCCATCGGCGTCGAGATCAATAAGCAGGTTCGGGATTCTTTTTTAAAATCTGTTATAGTTTTTAAAATGTACGTGAATCTGGTGATTTAGGGTAATAGATTGTGTTTGGTTTTGATAGAATCTTAATTAGTTTTTGGACTCTGTTTTTCTTATTAAACTTGTGAATCTTAATGTATGTTGTAGTTTGATGGGTTGGAATATGATGAGAGAAAGTTTCATTCTGTTTTGGACTCTGCTTTATATATATAAATTAAATGTGTGATTTTCGGGATGAATTTTGTAGGTTGGGAACAGAATTATTAAAAAAAGAATTCATGTGAGAGTTGAGCACGTGCAGCCTTCTCGATGCACCGAGGAATTTCGCTTGAGGAAGGTGAAGAATGACGAGCTGAAGGCTGAAGCCAAGGCCAAAGGCACAGTCATCTGCACTAAGAGGCAACCGGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGAGCTTTAATGGAAACTGTGACTCCCATTCCATACGATGTGGTTAATGATCTCAAGGGTGGCTATTGAAATTTTATCCTCTTTGAACTTTTGCCTTGTTTTGTAGTTTCATTTTTGTTTGATATTTGAACTGCTTGAATAGTACAATTTTATCATATTATGCTTCTAAATTTTGGATACAAAACTTATGGAATTAAATTGTTTCTTAGTTTCTAGTTTTGGCCATTAGCATAAGGAAGTGTAGTTTTAGCTTATTAAAAGTAAATTTTGTTGCCTTATGTTCTTGTTTCCATTGTTTTCATATATTCATATTTCTTAATCACCA

mRNA sequence

AAAAACCTAGCCCTCGTCACTATACAAATCTGAATGAACTAGGCTTTCTTCATTTTGTGAACGAGTGTGAGAGAAAGTTCCTCCTGCCCCAATCATGCCGGCCGGCCATGGACTTCGATCCCGTACCAGAGACCTCTTCGCCAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTGACTACCTACTTGAGGACGTACAAAATCGGTGATTATGTGGATATCAAGGTGAACGGCGCCGTCCACAAGGGTATGCCTCATAAATTTTATCATGGTCGCACGGGTCAGGTATGGAATGTTACAAAGCGCGCCATCGGCGTCGAGATCAATAAGCAGGTTGGGAACAGAATTATTAAAAAAAGAATTCATGTGAGAGTTGAGCACGTGCAGCCTTCTCGATGCACCGAGGAATTTCGCTTGAGGAAGGTGAAGAATGACGAGCTGAAGGCTGAAGCCAAGGCCAAAGGCACAGTCATCTGCACTAAGAGGCAACCGGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGAGCTTTAATGGAAACTGTGACTCCCATTCCATACGATGTGGTTAATGATCTCAAGGGTGGCTATTGAAATTTTATCCTCTTTGAACTTTTGCCTTGTTTTGTAGTTTCATTTTTGTTTGATATTTGAACTGCTTGAATAGTACAATTTTATCATATTATGCTTCTAAATTTTGGATACAAAACTTATGGAATTAAATTGTTTCTTAGTTTCTAGTTTTGGCCATTAGCATAAGGAAGTGTAGTTTTAGCTTATTAAAAGTAAATTTTGTTGCCTTATGTTCTTGTTTCCATTGTTTTCATATATTCATATTTCTTAATCACCA

Coding sequence (CDS)

ATGCCGGCCGGCCATGGACTTCGATCCCGTACCAGAGACCTCTTCGCCAGGCCTTTCAGGAAGAAGGGTTACATTGCTTTGACTACCTACTTGAGGACGTACAAAATCGGTGATTATGTGGATATCAAGGTGAACGGCGCCGTCCACAAGGGTATGCCTCATAAATTTTATCATGGTCGCACGGGTCAGGTATGGAATGTTACAAAGCGCGCCATCGGCGTCGAGATCAATAAGCAGGTTGGGAACAGAATTATTAAAAAAAGAATTCATGTGAGAGTTGAGCACGTGCAGCCTTCTCGATGCACCGAGGAATTTCGCTTGAGGAAGGTGAAGAATGACGAGCTGAAGGCTGAAGCCAAGGCCAAAGGCACAGTCATCTGCACTAAGAGGCAACCGGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGAGCTTTAATGGAAACTGTGACTCCCATTCCATACGATGTGGTTAATGATCTCAAGGGTGGCTATTGA

Protein sequence

MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGRTGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAKAKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY*

Homology

[Close]

BLAST of CSPI03G36200.2 vs. ExPASy Swiss-Prot
Match: Q43291 (60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2)

HSP 1 Score: 300.8 bits (769), Expect = 9.3e-81
Identity = 137/164 (83.54%), Postives = 153/164 (93.29%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG++WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK KNDELKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CSPI03G36200.2 vs. ExPASy Swiss-Prot
Match: Q9FDZ9 (60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 4.6e-80
Identity = 135/164 (82.32%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG++WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CSPI03G36200.2 vs. ExPASy Swiss-Prot
Match: Q02753 (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21A PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.9e-42
Identity = 83/157 (52.87%), Postives = 113/157 (71.97%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + L+TYL+ YK+GD VDIK NG++ KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R   N   +AEAK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
           A+G  +  KRQP  P+   +V  EG + +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

[Close]

BLAST of CSPI03G36200.2 vs. ExPASy Swiss-Prot
Match: Q12672 (60S ribosomal protein L21-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21B PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.5e-42
Identity = 82/157 (52.23%), Postives = 113/157 (71.97%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + ++TYL+ YK+GD VDIK NG++ KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHMSTYLKIYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R   N   +AEAK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
           A+G  +  KRQP  P+   +V  EG + +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

[Close]

BLAST of CSPI03G36200.2 vs. ExPASy Swiss-Prot
Match: O82574 (60S ribosomal protein L21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.5e-42
Identity = 90/158 (56.96%), Postives = 114/158 (72.15%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MP  +G R+RTR LFAR F+  G + L+TYL  +KIG+YVD+  N AVHKGMP K+YHGR
Sbjct: 1   MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG VWNVTKRAIGVEINK+V +RIIKKRIHVR++HV+ S C + F  R  +ND++K +A 
Sbjct: 61  TGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAH 120

Query: 121 -AKGTVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
            AK  V  TKR P  PK G ++  +G + ET   IPY+
Sbjct: 121 VAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158

[Close]

BLAST of CSPI03G36200.2 vs. ExPASy TrEMBL
Match: A0A0A0LEZ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G797610 PE=3 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 3.9e-90
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CSPI03G36200.2 vs. ExPASy TrEMBL
Match: A0A5D3DP20 (60S ribosomal protein L21-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005180 PE=3 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.3e-89
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CSPI03G36200.2 vs. ExPASy TrEMBL
Match: A0A1S3B7V0 (60S ribosomal protein L21-1 OS=Cucumis melo OX=3656 GN=LOC103486741 PE=3 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.3e-89
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CSPI03G36200.2 vs. ExPASy TrEMBL
Match: A0A6J1F7A4 (60S ribosomal protein L21-1-like OS=Cucurbita moschata OX=3662 GN=LOC111441507 PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.1e-87
Identity = 158/164 (96.34%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCTEEFRLRKVKND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CSPI03G36200.2 vs. ExPASy TrEMBL
Match: A0A6J1IYF0 (60S ribosomal protein L21-1 OS=Cucurbita maxima OX=3661 GN=LOC111481773 PE=3 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.1e-87
Identity = 157/164 (95.73%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRC EEFRLRKVKND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CSPI03G36200.2 vs. NCBI nr
Match: XP_004140433.3 (60S ribosomal protein L21-1 [Cucumis sativus] >XP_031737611.1 60S ribosomal protein L21-1-like [Cucumis sativus])

HSP 1 Score: 339.3 bits (869), Expect = 1.8e-89
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEH+QPSRCTEEFRLRKVKNDELKAEAK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHMQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CSPI03G36200.2 vs. NCBI nr
Match: XP_031739289.1 (60S ribosomal protein L21-1 [Cucumis sativus] >XP_031739303.1 60S ribosomal protein L21-1 [Cucumis sativus] >XP_031745254.1 60S ribosomal protein L21-1 [Cucumis sativus] >KAE8651128.1 hypothetical protein Csa_001407 [Cucumis sativus] >KGN43674.2 hypothetical protein Csa_017109 [Cucumis sativus])

HSP 1 Score: 338.6 bits (867), Expect = 3.1e-89
Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CSPI03G36200.2 vs. NCBI nr
Match: XP_008443016.1 (PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo] >KAA0043756.1 60S ribosomal protein L21-1 [Cucumis melo var. makuwa] >TYK25377.1 60S ribosomal protein L21-1 [Cucumis melo var. makuwa])

HSP 1 Score: 337.0 bits (863), Expect = 8.9e-89
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CSPI03G36200.2 vs. NCBI nr
Match: XP_038906379.1 (60S ribosomal protein L21-1 [Benincasa hispida])

HSP 1 Score: 336.7 bits (862), Expect = 1.2e-88
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CSPI03G36200.2 vs. NCBI nr
Match: XP_022934303.1 (60S ribosomal protein L21-1-like [Cucurbita moschata])

HSP 1 Score: 332.4 bits (851), Expect = 2.2e-87
Identity = 158/164 (96.34%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG+VWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCTEEFRLRKVKND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CSPI03G36200.2 vs. TAIR 10
Match: AT1G09590.1 (Translation protein SH3-like family protein )

HSP 1 Score: 300.8 bits (769), Expect = 6.6e-82
Identity = 137/164 (83.54%), Postives = 153/164 (93.29%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG++WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK KNDELKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CSPI03G36200.2 vs. TAIR 10
Match: AT1G09690.1 (Translation protein SH3-like family protein )

HSP 1 Score: 300.8 bits (769), Expect = 6.6e-82
Identity = 137/164 (83.54%), Postives = 153/164 (93.29%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG++WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK KNDELKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CSPI03G36200.2 vs. TAIR 10
Match: AT1G57660.1 (Translation protein SH3-like family protein )

HSP 1 Score: 298.5 bits (763), Expect = 3.3e-81
Identity = 135/164 (82.32%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG++WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CSPI03G36200.2 vs. TAIR 10
Match: AT1G57860.1 (Translation protein SH3-like family protein )

HSP 1 Score: 298.5 bits (763), Expect = 3.3e-81
Identity = 135/164 (82.32%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120
           TG++WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+G  I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

The following BLAST results are available for this feature:

BLAST of CSPI03G36200.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43291	9.3e-81	83.54	60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2	[more]
Q9FDZ9	4.6e-80	82.32	60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1	[more]
Q02753	2.9e-42	52.87	60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]
Q12672	6.5e-42	52.23	60S ribosomal protein L21-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]
O82574	6.5e-42	56.96	60S ribosomal protein L21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1	[more]

BLAST of CSPI03G36200.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEZ0	3.9e-90	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G797610 PE=3 SV=1	[more]
A0A5D3DP20	4.3e-89	98.78	60S ribosomal protein L21-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3B7V0	4.3e-89	98.78	60S ribosomal protein L21-1 OS=Cucumis melo OX=3656 GN=LOC103486741 PE=3 SV=1	[more]
A0A6J1F7A4	1.1e-87	96.34	60S ribosomal protein L21-1-like OS=Cucurbita moschata OX=3662 GN=LOC111441507 P...	[more]
A0A6J1IYF0	4.1e-87	95.73	60S ribosomal protein L21-1 OS=Cucurbita maxima OX=3661 GN=LOC111481773 PE=3 SV=...	[more]

BLAST of CSPI03G36200.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140433.3	1.8e-89	99.39	60S ribosomal protein L21-1 [Cucumis sativus] >XP_031737611.1 60S ribosomal prot...	[more]
XP_031739289.1	3.1e-89	99.39	60S ribosomal protein L21-1 [Cucumis sativus] >XP_031739303.1 60S ribosomal prot...	[more]
XP_008443016.1	8.9e-89	98.78	PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo] >KAA0043756.1 60S ribosoma...	[more]
XP_038906379.1	1.2e-88	98.78	60S ribosomal protein L21-1 [Benincasa hispida]	[more]
XP_022934303.1	2.2e-87	96.34	60S ribosomal protein L21-1-like [Cucurbita moschata]	[more]

BLAST of CSPI03G36200.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09590.1	6.6e-82	83.54	Translation protein SH3-like family protein	[more]
AT1G09690.1	6.6e-82	83.54	Translation protein SH3-like family protein	[more]
AT1G57660.1	3.3e-81	82.32	Translation protein SH3-like family protein	[more]
AT1G57860.1	3.3e-81	82.32	Translation protein SH3-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.250.3260		coord: 99..156 e-value: 6.5E-24 score: 85.7
None	No IPR available	PANTHER	PTHR20981:SF31	60S RIBOSOMAL PROTEIN L21-1	coord: 1..164
IPR001147	Ribosomal protein L21e	PFAM	PF01157	Ribosomal_L21e	coord: 1..101 e-value: 7.9E-46 score: 154.0
IPR001147	Ribosomal protein L21e	PANTHER	PTHR20981	60S RIBOSOMAL PROTEIN L21	coord: 1..164
IPR036948	Ribosomal protein L21 superfamily	GENE3D	2.30.30.70	Ribosomal protein L21	coord: 1..97 e-value: 6.7E-46 score: 156.3
IPR018259	Ribosomal protein L21e, conserved site	PROSITE	PS01171	RIBOSOMAL_L21E	coord: 37..62
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 3..99

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G36200	CSPI03G36200	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G36200.2.utr5p1	CSPI03G36200.2.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G36200.2.cds1	CSPI03G36200.2.cds1	CDS
CSPI03G36200.2.cds2	CSPI03G36200.2.cds2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G36200.2.utr3p1	CSPI03G36200.2.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G36200.2	CSPI03G36200.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome