CSPI03G30040.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI03G30040.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2
Location	Chr3: 27504252 .. 27506300 (-)
Sequence length	1165
RNA-Seq Expression	CSPI03G30040.1
Synteny	CSPI03G30040.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGAAGACGTGTATAAATGCAGAATTATGAGAGTTGTAGCACAAGTAAAGAGGATGGTAGCTAACTTAGATACAAATAAAGATATATTTCCGAAGAGAAATTGGGGCCTCACATTGTATAGATAAGGTTCCAATTCCAATTACTTGCTTTATTCCACGTATTGTCATCTCTCACAAAGAGTGAAGAGACAAAAATGGCAGAAGCTGGGCACCTTGTTACAACAGCAAGAAATATCAACTCCATTTCAAGTGCATTCAACAAAGCTGCACCTAAATCTTCAACTCAAACCTTCAAAATCAAAGCTTCTTCAAAGAGAAACGACATCTCCTTGGTAAAACACAATCTCCTACTTGCCATCTTTCAGATTTCTGCAGACATTCCCTCTTCTATTCATACAATTCTCTTCCATCTAAAGATTTTTTTTTTTTTTTCATTTTTCTTTTTTAAATGAAGAGAAGAAGCAACAAAACAACAAGGCGTCTAATTACAATATCAACAGCTGGAAGCAGATGGCAAGGGAAATGGACCTGTGATTACATGCTTTCCCTGCAAGACTTCAACTTAGAAGACTTGGTAGAAGATGAAAACAATAATGCACATGTCTTCATCAATCTCTGTATTGAGAAGGTAATTTCAATACTTTTCTCTCTCCAAAACTCTATCTTATGTATAATAACATTAATGAACGCACCTTGAATCTAACTCCAACAACATCTAACGATGGATTTGATCCATCTCCAATAGAATCTCAGTGTGGACTATTATTGGAGAGAACAAGATGGGTAAAGATATATTCTCCAAATTGTTTCTTTTTCTTTTTTCATTTTTTGTGGAGGAGCCTGCTGAAGAATCCGTTTCTCAGCTCAAGAGAATAGACATCGAACAATCACTTTTTAAGCAATTTAAAGAATTCAAACAGCACAAAATGAGAGCAATAATTCTACACAAAATGCTCTATTCGCTAACTATATCACTAACAGTTTCCCTTTGTTTTTACCAGCATGCAAGTTTCGGGTTCACTGTGGATGGAAGGATCAACACATCATTCACTCGAAAGTGTTGTGCCTGTTCTTCGCCATACTGCAGAGAGGTCACTGTTTAAATAATAAAAAAACGATTGAATCACATATGGCTTATTCTTAGTCATCCGTATCACAACTATCCATGAAGTTTCAATTTATAACACTCCAACCAATGTTCTAACACACAATTATCGTAATCAAACAGATCAATGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAAATTCATCTTCCAGATATTGGAGGCGACGATCCTTCGGTAAGTTTTTGCATTTCTTCACTTCAACTACTTAGAAGTATGACAACCATCTTCAATTAAACAGGTAATCTATGTTAAACCCGGACTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACCAAGGTGAGAAGTTAGCAAACAGAATTAGCCTACTTATCAATAACTATTAATATAAAAAAAAATACTGCCAAGATTCAATTGGAATAAGTTAACAAAACAGCCTACCTCTTCCAGGACACTTGCTCAGAGATGTGTGAGAAATCTCAACCCACAGTGCAATGTAAGTGGTCAAGTGTCACTGACTCAAGCTTCCACTTGCAATTAACGTTGGGACTAATTGAGAAATGTTCATTGCAGATATTGGTGCACAGAACGCTGCATCTATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAGAAAATCTAATTCATAGATAACAAGCAATATGTATATATATTGATGGTTGCTCATCTAGGCTTCCGAAAACATGACTGCCCATTGATAAAATTAAATTGTTTATTAGTTTCTAAGTCAATATCATAATGGAAAAGTGGTTGACACCTGCAACTAAAATTGGTTTTGCCTGATCACCTATATTTCTCCTTTAAGTAGAAGAAGACTAATAAGAAATTATCCCTTTGACCAAACCATTCAACATAAGTTCAAAAATACATCCCGAAGTATATCAATCCCCCACCCCCCTACCCT

mRNA sequence

GAGGAAGACGTGTATAAATGCAGAATTATGAGAGTTGTAGCACAAGTAAAGAGGATGGTAGCTAACTTAGATACAAATAAAGATATATTTCCGAAGAGAAATTGGGGCCTCACATTGTATAGATAAGGTTCCAATTCCAATTACTTGCTTTATTCCACGTATTGTCATCTCTCACAAAGAGTGAAGAGACAAAAATGGCAGAAGCTGGGCACCTTGTTACAACAGCAAGAAATATCAACTCCATTTCAAGTGCATTCAACAAAGCTGCACCTAAATCTTCAACTCAAACCTTCAAAATCAAAGCTTCTTCAAAGAGAAACGACATCTCCTTGAGAAGAAGCAACAAAACAACAAGGCGTCTAATTACAATATCAACAGCTGGAAGCAGATGGCAAGGGAAATGGACCTGTGATTACATGCTTTCCCTGCAAGACTTCAACTTAGAAGACTTGGTAGAAGATGAAAACAATAATGCACATGTCTTCATCAATCTCTGTATTGAGAAGCATGCAAGTTTCGGGTTCACTGTGGATGGAAGGATCAACACATCATTCACTCGAAAGTGTTGTGCCTGTTCTTCGCCATACTGCAGAGAGATCAATGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAAATTCATCTTCCAGATATTGGAGGCGACGATCCTTCGGTAATCTATGTTAAACCCGGACTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACCAAGGACACTTGCTCAGAGATGTGTGAGAAATCTCAACCCACAGTGCAATATATTGGTGCACAGAACGCTGCATCTATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAGAAAATCTAATTCATAGATAACAAGCAATATGTATATATATTGATGGTTGCTCATCTAGGCTTCCGAAAACATGACTGCCCATTGATAAAATTAAATTGTTTATTAGTTTCTAAGTCAATATCATAATGGAAAAGTGGTTGACACCTGCAACTAAAATTGGTTTTGCCTGATCACCTATATTTCTCCTTTAAGTAGAAGAAGACTAATAAGAAATTATCCCTTTGACCAAACCATTCAACATAAGTTCAAAAATACATCCCGAAGTATATCAATCCCCCACCCCCCTACCCT

Coding sequence (CDS)

ATGGCAGAAGCTGGGCACCTTGTTACAACAGCAAGAAATATCAACTCCATTTCAAGTGCATTCAACAAAGCTGCACCTAAATCTTCAACTCAAACCTTCAAAATCAAAGCTTCTTCAAAGAGAAACGACATCTCCTTGAGAAGAAGCAACAAAACAACAAGGCGTCTAATTACAATATCAACAGCTGGAAGCAGATGGCAAGGGAAATGGACCTGTGATTACATGCTTTCCCTGCAAGACTTCAACTTAGAAGACTTGGTAGAAGATGAAAACAATAATGCACATGTCTTCATCAATCTCTGTATTGAGAAGCATGCAAGTTTCGGGTTCACTGTGGATGGAAGGATCAACACATCATTCACTCGAAAGTGTTGTGCCTGTTCTTCGCCATACTGCAGAGAGATCAATGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAAATTCATCTTCCAGATATTGGAGGCGACGATCCTTCGGTAATCTATGTTAAACCCGGACTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACCAAGGACACTTGCTCAGAGATGTGTGAGAAATCTCAACCCACAGTGCAATATATTGGTGCACAGAACGCTGCATCTATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAGAAAATCTAATTCATAG

Protein sequence

MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITISTAGSRWQGKWTCDYMLSLQDFNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNS*

Homology

[Close]

BLAST of CSPI03G30040.1 vs. ExPASy Swiss-Prot
Match: Q9C5M1 (Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g19800 PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 7.7e-57
Identity = 106/180 (58.89%), Postives = 135/180 (75.00%), Query Frame = 0


Query: 49  SNKTTRRLITISTAGSRWQGKWTCDYMLSLQDFNLEDLVEDENNNAHVFINLCIEKHASF 108
           S+KT +RLIT+S +  +W G W   Y +SL+D  L+DLVED   N+ V ++L +++HAS 
Sbjct: 49  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 108

Query: 109 GFTVDGRINTSFTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYV 168
           G +VDGRI TS  RKC  CSS Y R I+ +F V +L S+R NR   LP+IGGDDPSVIYV
Sbjct: 109 GLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYV 168

Query: 169 KPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDKRWSRLLELRK 228
           +PG EA+LDSLV+DTIRLTT  KD CS+ CEKS+PT+ Y+G  N AS+DKRWSRLLEL+K
Sbjct: 169 RPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKK 228

[Close]

BLAST of CSPI03G30040.1 vs. ExPASy TrEMBL
Match: A0A0A0L9P4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656510 PE=4 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 4.5e-116
Identity = 223/269 (82.90%), Postives = 227/269 (84.39%), Query Frame = 0


Query: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRR------------ 60
           MAEAGHLVTTARNINSISS+FNKAAPK STQTFKIKASSKRNDISL +            
Sbjct: 1   MAEAGHLVTTARNINSISSSFNKAAPKPSTQTFKIKASSKRNDISLVKHNLLLVIFQISA 60

Query: 61  --------------------------SNKTTRRLITISTAGSRWQGKWTCDYMLSLQDFN 120
                                      NKTTRRLITISTAGSRWQGKWTCDY+LSL+D N
Sbjct: 61  DIPSSIHTFLFHLMIFSFSSLNEAQIRNKTTRRLITISTAGSRWQGKWTCDYLLSLRDLN 120

Query: 121 LEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREINANFNVL 180
           LEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREINANFNVL
Sbjct: 121 LEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREINANFNVL 180

Query: 181 VLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQ 232
           VLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQ
Sbjct: 181 VLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQ 240

[Close]

BLAST of CSPI03G30040.1 vs. ExPASy TrEMBL
Match: A0A5D3C1F8 (DUF177 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00270 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.3e-115
Identity = 213/231 (92.21%), Postives = 219/231 (94.81%), Query Frame = 0


Query: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60
           MAEAG LVTT RNINSISS+FNK APKS TQTFKIKASSKRNDISLRRSNKTTRRLITIS
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60

Query: 61  TAGSRWQGKWTCDYMLSLQDFNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120
           T+GSRWQGKWTCDY+LSL+D NLEDLVEDE+ NAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 121 TRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180
           TRKCC CS PYCREI ANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV
Sbjct: 121 TRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180

Query: 181 RDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNS 232
           RDTIRLTTSTKDTCSE CEKSQPTVQYIGAQNAASIDKRW RLLELRKS +
Sbjct: 181 RDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKSKA 231

[Close]

BLAST of CSPI03G30040.1 vs. ExPASy TrEMBL
Match: A0A1S3CFK7 (uncharacterized protein LOC103500366 OS=Cucumis melo OX=3656 GN=LOC103500366 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.3e-115
Identity = 213/231 (92.21%), Postives = 219/231 (94.81%), Query Frame = 0


Query: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60
           MAEAG LVTT RNINSISS+FNK APKS TQTFKIKASSKRNDISLRRSNKTTRRLITIS
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60

Query: 61  TAGSRWQGKWTCDYMLSLQDFNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120
           T+GSRWQGKWTCDY+LSL+D NLEDLVEDE+ NAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 121 TRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180
           TRKCC CS PYCREI ANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV
Sbjct: 121 TRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180

Query: 181 RDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNS 232
           RDTIRLTTSTKDTCSE CEKSQPTVQYIGAQNAASIDKRW RLLELRKS +
Sbjct: 181 RDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKSKA 231

[Close]

BLAST of CSPI03G30040.1 vs. ExPASy TrEMBL
Match: A0A6J1J5E3 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111481900 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 6.3e-110
Identity = 207/232 (89.22%), Postives = 219/232 (94.40%), Query Frame = 0


Query: 1   MAEAGHLVTTARNINSISSAFNK-AAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITI 60
           MAEAGHLV  A N+NSISS+FNK AAPK +TQTFKIKASSKRNDISLRRS+K  RRLITI
Sbjct: 1   MAEAGHLV-AAGNVNSISSSFNKTAAPKFATQTFKIKASSKRNDISLRRSSKPPRRLITI 60

Query: 61  STAGSRWQGKWTCDYMLSLQDFNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTS 120
           STAGS WQGKW+CDY+LSLQDFNLEDLVEDE+ NAHVFINLCIEKHASFGFTVDG+INTS
Sbjct: 61  STAGSMWQGKWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTS 120

Query: 121 FTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSL 180
           FTRKCC CSSPYCREINANFNVLVLSSNRA RE  LP+IGGDDPSVIYVKPGLEADLDSL
Sbjct: 121 FTRKCCTCSSPYCREINANFNVLVLSSNRAKRETTLPEIGGDDPSVIYVKPGLEADLDSL 180

Query: 181 VRDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNS 232
           VRDTIRLTTSTKDTCSE+CEKSQP+VQYIGAQNAASIDKRWSRLLELRKS+S
Sbjct: 181 VRDTIRLTTSTKDTCSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKSHS 231

[Close]

BLAST of CSPI03G30040.1 vs. ExPASy TrEMBL
Match: A0A6J1F8T8 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441878 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 4.5e-108
Identity = 204/232 (87.93%), Postives = 216/232 (93.10%), Query Frame = 0


Query: 1   MAEAGHLVTTARNINSISSAFNK-AAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITI 60
           MAEAGHLV  A N+NSISS+FNK AA K +TQ FKIKASSKRNDISLRRS+K  RRLITI
Sbjct: 1   MAEAGHLVAAA-NVNSISSSFNKAAASKFATQAFKIKASSKRNDISLRRSSKPPRRLITI 60

Query: 61  STAGSRWQGKWTCDYMLSLQDFNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTS 120
           STAGS WQG+W+CDY+LSLQDFNLEDLVEDE+ NAHVFINLCIEKHASFGFTVDG+INTS
Sbjct: 61  STAGSMWQGRWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTS 120

Query: 121 FTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSL 180
           F RKCC CSSPYCREINANFNVLVLSSNRA RE  LPDIGGDDPSVIYVKPGLEADLDSL
Sbjct: 121 FIRKCCTCSSPYCREINANFNVLVLSSNRAKRETTLPDIGGDDPSVIYVKPGLEADLDSL 180

Query: 181 VRDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNS 232
           VRDTIRLTTSTKDTCSE+CEKSQP+VQYIGAQNAASIDKRWSRLLELRKS+S
Sbjct: 181 VRDTIRLTTSTKDTCSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKSHS 231

[Close]

BLAST of CSPI03G30040.1 vs. NCBI nr
Match: XP_011651803.2 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 [Cucumis sativus] >KAE8650945.1 hypothetical protein Csa_002331 [Cucumis sativus])

HSP 1 Score: 454.1 bits (1167), Expect = 7.1e-124
Identity = 229/231 (99.13%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60
           MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS
Sbjct: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60

Query: 61  TAGSRWQGKWTCDYMLSLQDFNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120
           TAGSRWQGKWT DYMLSLQD NLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 121 TRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180
           TRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV
Sbjct: 121 TRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180

Query: 181 RDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNS 232
           RDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNS
Sbjct: 181 RDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNS 231

[Close]

BLAST of CSPI03G30040.1 vs. NCBI nr
Match: XP_031738565.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Cucumis sativus] >KAE8650911.1 hypothetical protein Csa_001037 [Cucumis sativus])

HSP 1 Score: 443.4 bits (1139), Expect = 1.2e-120
Identity = 224/231 (96.97%), Postives = 227/231 (98.27%), Query Frame = 0


Query: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60
           MAEAGHLVTTARNINSISS+FNKAAPK STQTFKIKASSKRNDISL RSNKTTRRLITIS
Sbjct: 1   MAEAGHLVTTARNINSISSSFNKAAPKPSTQTFKIKASSKRNDISL-RSNKTTRRLITIS 60

Query: 61  TAGSRWQGKWTCDYMLSLQDFNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120
           TAGSRWQGKWTCDY+LSL+D NLEDLVEDEN NAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TAGSRWQGKWTCDYLLSLRDLNLEDLVEDENKNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 121 TRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180
           TRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV
Sbjct: 121 TRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180

Query: 181 RDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNS 232
           RDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNS
Sbjct: 181 RDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNS 230

[Close]

BLAST of CSPI03G30040.1 vs. NCBI nr
Match: XP_008461873.1 (PREDICTED: uncharacterized protein LOC103500366 [Cucumis melo] >KAA0052757.1 DUF177 domain-containing protein [Cucumis melo var. makuwa] >TYK04199.1 DUF177 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 425.6 bits (1093), Expect = 2.7e-115
Identity = 213/231 (92.21%), Postives = 219/231 (94.81%), Query Frame = 0


Query: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60
           MAEAG LVTT RNINSISS+FNK APKS TQTFKIKASSKRNDISLRRSNKTTRRLITIS
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60

Query: 61  TAGSRWQGKWTCDYMLSLQDFNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120
           T+GSRWQGKWTCDY+LSL+D NLEDLVEDE+ NAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 121 TRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180
           TRKCC CS PYCREI ANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV
Sbjct: 121 TRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180

Query: 181 RDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNS 232
           RDTIRLTTSTKDTCSE CEKSQPTVQYIGAQNAASIDKRW RLLELRKS +
Sbjct: 181 RDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKSKA 231

[Close]

BLAST of CSPI03G30040.1 vs. NCBI nr
Match: XP_038906104.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 412.1 bits (1058), Expect = 3.1e-111
Identity = 209/232 (90.09%), Postives = 219/232 (94.40%), Query Frame = 0


Query: 1   MAEAGHLVTTARNINSISSAFNK-AAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITI 60
           MAE GHLV TARNINSISS+FNK AAPK +TQTFKI ASSKRNDISLRRSNKT+RRLITI
Sbjct: 1   MAETGHLV-TARNINSISSSFNKAAAPKYATQTFKITASSKRNDISLRRSNKTSRRLITI 60

Query: 61  STAGSRWQGKWTCDYMLSLQDFNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTS 120
           ST+GSRWQGKWT DY+LSL+D NLEDLVEDE+ NA VFINLCIEKHASFGFTVDG+INTS
Sbjct: 61  STSGSRWQGKWTSDYLLSLRDLNLEDLVEDEHKNARVFINLCIEKHASFGFTVDGKINTS 120

Query: 121 FTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSL 180
           FTRKCC CSSPYCREINANFNVLVLSSNR NREIHLPDIGGDDPSVIYVKPGLEADLDS 
Sbjct: 121 FTRKCCTCSSPYCREINANFNVLVLSSNRTNREIHLPDIGGDDPSVIYVKPGLEADLDSF 180

Query: 181 VRDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNS 232
           VRDTIRLTTSTKDTCSE+CEKSQPTVQYIGAQN ASIDKRWSRLLELRKSN+
Sbjct: 181 VRDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNGASIDKRWSRLLELRKSNA 231

[Close]

BLAST of CSPI03G30040.1 vs. NCBI nr
Match: XP_022983270.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X4 [Cucurbita maxima])

HSP 1 Score: 406.8 bits (1044), Expect = 1.3e-109
Identity = 207/232 (89.22%), Postives = 219/232 (94.40%), Query Frame = 0


Query: 1   MAEAGHLVTTARNINSISSAFNK-AAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITI 60
           MAEAGHLV  A N+NSISS+FNK AAPK +TQTFKIKASSKRNDISLRRS+K  RRLITI
Sbjct: 1   MAEAGHLV-AAGNVNSISSSFNKTAAPKFATQTFKIKASSKRNDISLRRSSKPPRRLITI 60

Query: 61  STAGSRWQGKWTCDYMLSLQDFNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTS 120
           STAGS WQGKW+CDY+LSLQDFNLEDLVEDE+ NAHVFINLCIEKHASFGFTVDG+INTS
Sbjct: 61  STAGSMWQGKWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTS 120

Query: 121 FTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSL 180
           FTRKCC CSSPYCREINANFNVLVLSSNRA RE  LP+IGGDDPSVIYVKPGLEADLDSL
Sbjct: 121 FTRKCCTCSSPYCREINANFNVLVLSSNRAKRETTLPEIGGDDPSVIYVKPGLEADLDSL 180

Query: 181 VRDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNS 232
           VRDTIRLTTSTKDTCSE+CEKSQP+VQYIGAQNAASIDKRWSRLLELRKS+S
Sbjct: 181 VRDTIRLTTSTKDTCSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKSHS 231

[Close]

BLAST of CSPI03G30040.1 vs. TAIR 10
Match: AT3G19800.1 (Protein of unknown function (DUF177) )

HSP 1 Score: 221.9 bits (564), Expect = 5.5e-58
Identity = 106/180 (58.89%), Postives = 135/180 (75.00%), Query Frame = 0


Query: 49  SNKTTRRLITISTAGSRWQGKWTCDYMLSLQDFNLEDLVEDENNNAHVFINLCIEKHASF 108
           S+KT +RLIT+S +  +W G W   Y +SL+D  L+DLVED   N+ V ++L +++HAS 
Sbjct: 49  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 108

Query: 109 GFTVDGRINTSFTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYV 168
           G +VDGRI TS  RKC  CSS Y R I+ +F V +L S+R NR   LP+IGGDDPSVIYV
Sbjct: 109 GLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYV 168

Query: 169 KPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDKRWSRLLELRK 228
           +PG EA+LDSLV+DTIRLTT  KD CS+ CEKS+PT+ Y+G  N AS+DKRWSRLLEL+K
Sbjct: 169 RPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKK 228

[Close]

BLAST of CSPI03G30040.1 vs. TAIR 10
Match: AT3G19800.2 (Protein of unknown function (DUF177) )

HSP 1 Score: 221.9 bits (564), Expect = 5.5e-58
Identity = 106/180 (58.89%), Postives = 135/180 (75.00%), Query Frame = 0


Query: 49  SNKTTRRLITISTAGSRWQGKWTCDYMLSLQDFNLEDLVEDENNNAHVFINLCIEKHASF 108
           S+KT +RLIT+S +  +W G W   Y +SL+D  L+DLVED   N+ V ++L +++HAS 
Sbjct: 46  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 105

Query: 109 GFTVDGRINTSFTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYV 168
           G +VDGRI TS  RKC  CSS Y R I+ +F V +L S+R NR   LP+IGGDDPSVIYV
Sbjct: 106 GLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYV 165

Query: 169 KPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDKRWSRLLELRK 228
           +PG EA+LDSLV+DTIRLTT  KD CS+ CEKS+PT+ Y+G  N AS+DKRWSRLLEL+K
Sbjct: 166 RPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKK 225

The following BLAST results are available for this feature:

BLAST of CSPI03G30040.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5M1	7.7e-57	58.89	Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic O...	[more]

BLAST of CSPI03G30040.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9P4	4.5e-116	82.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656510 PE=4 SV=1	[more]
A0A5D3C1F8	1.3e-115	92.21	DUF177 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CFK7	1.3e-115	92.21	uncharacterized protein LOC103500366 OS=Cucumis melo OX=3656 GN=LOC103500366 PE=...	[more]
A0A6J1J5E3	6.3e-110	89.22	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
A0A6J1F8T8	4.5e-108	87.93	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]

BLAST of CSPI03G30040.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651803.2	7.1e-124	99.13	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
XP_031738565.1	1.2e-120	96.97	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [...	[more]
XP_008461873.1	2.7e-115	92.21	PREDICTED: uncharacterized protein LOC103500366 [Cucumis melo] >KAA0052757.1 DUF...	[more]
XP_038906104.1	3.1e-111	90.09	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [...	[more]
XP_022983270.1	1.3e-109	89.22	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]

BLAST of CSPI03G30040.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19800.1	5.5e-58	58.89	Protein of unknown function (DUF177)	[more]
AT3G19800.2	5.5e-58	58.89	Protein of unknown function (DUF177)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003772	Large ribosomal RNA subunit accumulation protein YceD	PFAM	PF02620	YceD	coord: 112..226 e-value: 4.0E-13 score: 49.6
IPR044985	Large ribosomal RNA subunit accumulation protein YceD homologue 2, chloroplastic	PANTHER	PTHR37734	LARGE RIBOSOMAL RNA SUBUNIT ACCUMULATION PROTEIN YCED HOMOLOG 2, CHLOROPLASTIC	coord: 1..230

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G30040	CSPI03G30040	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G30040.1.utr3p1	CSPI03G30040.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G30040.1.cds7	CSPI03G30040.1.cds7	CDS
CSPI03G30040.1.cds6	CSPI03G30040.1.cds6	CDS
CSPI03G30040.1.cds5	CSPI03G30040.1.cds5	CDS
CSPI03G30040.1.cds4	CSPI03G30040.1.cds4	CDS
CSPI03G30040.1.cds3	CSPI03G30040.1.cds3	CDS
CSPI03G30040.1.cds2	CSPI03G30040.1.cds2	CDS
CSPI03G30040.1.cds1	CSPI03G30040.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G30040.1.utr5p1	CSPI03G30040.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G30040.1	CSPI03G30040.1-protein	polypeptide