CSPI03G21690.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI03G21690.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr3: 18014953 .. 18015977 (+)
Sequence length	630
RNA-Seq Expression	CSPI03G21690.1
Synteny	CSPI03G21690.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCTCCTACAACTACTCATTTGAAAGTGGCGAAGAGAATTCTTCGTTACCTCAAAGGTACGGTTGACTATGGGTTATTTTATTCTTCTTCTAAAGAATTCAAGCTTGAAGGCTATTGTGATAGTGACTGGGCTGGAGATACTAATGATCGAAAGAGCACTAGTGGATTTGTATTCTTCATTGGTAATACTGCATTTACTTGGAGTTCTAAGAAACAACGTATTGTGACATTATCCACTTGTGAGGTCGAATGCGTTGCTGCAGCTTCATGTGTTTGTCATGCAATTTGGTTAAGAAATTTGTTAAAGACAATTGGAATTTTGCAAGATGATCCAACTGTGATCCATGTAGACAATAAGTCAACAATTGCTTTGGCAAAGAATCCCGTGTTCCATGATCGTAGCAAACACATTGATACTAGATTTCATTTCATCAGAGATTGCATTTCAAGGAAGGAGGTTCATGTTGAATATGTGAAGTCTGAAGATCAAATTGCAGATATTTTCACGAAGTTACTCAAAGTTAATGTGTTTAACAAGTTAACAAGTTCGCTTGGAGTTTTTTTAAAAAAGACATGTTTAAGGGAGGATATTGAAAATTAAACATGCTTTAAATAAATAAGTTATATGTGAATTGATTTATGAGAGTTAGAAAAAGTTAAAGGTTGTGAGTTAAAATGTTGAAAGTTAATTTAGTATGAGTTTTCATATTAATTAAGTTTAGGTTTTAAATTGTTGTGTTTAATCTGTGGTATGAGTTATGCTCGTGAAAATCCTATAAATAGGATTGAAATGTTGTAATCTAAATTATCCAAGTGTGAGTAGAATACACATAAAAAAGTTAGAGTCTTCAATTAAAGTTTGTTTTTTCTTCTTAAATATTCTACTTGGTAATTATCTATTTGAGGTGTTCATTGTACACTTCCAACAACAGTGGTACTTCTAAAGAGTTAAGTGGTGATGGCAGTCAAGCATTGTCCAGTGATAGACCCAGAAAAAGGTTCTTAAGATGTCGAACATGA

mRNA sequence

ATGGAATCTCCTACAACTACTCATTTGAAAGTGGCGAAGAGAATTCTTCGTTACCTCAAAGGTACGGTTGACTATGGGTTATTTTATTCTTCTTCTAAAGAATTCAAGCTTGAAGGCTATTGTGATAGTGACTGGGCTGGAGATACTAATGATCGAAAGAGCACTAGTGGATTTGTATTCTTCATTGGTAATACTGCATTTACTTGGAGTTCTAAGAAACAACGTATTGTGACATTATCCACTTGTGAGGTCGAATGCGTTGCTGCAGCTTCATGTGTTTGTCATGCAATTTGGTTAAGAAATTTGTTAAAGACAATTGGAATTTTGCAAGATGATCCAACTGTGATCCATGTAGACAATAAGTCAACAATTGCTTTGGCAAAGAATCCCGTGTTCCATGATCGTAGCAAACACATTGATACTAGATTTCATTTCATCAGAGATTGCATTTCAAGGAAGGAGGTTCATGTTGAATATGTGAAGTCTGAAGATCAAATTGCAGATATTTTCACGAAGTTACTCAAAGTTAATGTGTTTAACAATGGTACTTCTAAAGAGTTAAGTGGTGATGGCAGTCAAGCATTGTCCAGTGATAGACCCAGAAAAAGGTTCTTAAGATGTCGAACATGA

Coding sequence (CDS)

ATGGAATCTCCTACAACTACTCATTTGAAAGTGGCGAAGAGAATTCTTCGTTACCTCAAAGGTACGGTTGACTATGGGTTATTTTATTCTTCTTCTAAAGAATTCAAGCTTGAAGGCTATTGTGATAGTGACTGGGCTGGAGATACTAATGATCGAAAGAGCACTAGTGGATTTGTATTCTTCATTGGTAATACTGCATTTACTTGGAGTTCTAAGAAACAACGTATTGTGACATTATCCACTTGTGAGGTCGAATGCGTTGCTGCAGCTTCATGTGTTTGTCATGCAATTTGGTTAAGAAATTTGTTAAAGACAATTGGAATTTTGCAAGATGATCCAACTGTGATCCATGTAGACAATAAGTCAACAATTGCTTTGGCAAAGAATCCCGTGTTCCATGATCGTAGCAAACACATTGATACTAGATTTCATTTCATCAGAGATTGCATTTCAAGGAAGGAGGTTCATGTTGAATATGTGAAGTCTGAAGATCAAATTGCAGATATTTTCACGAAGTTACTCAAAGTTAATGTGTTTAACAATGGTACTTCTAAAGAGTTAAGTGGTGATGGCAGTCAAGCATTGTCCAGTGATAGACCCAGAAAAAGGTTCTTAAGATGTCGAACATGA

Protein sequence

MESPTTTHLKVAKRILRYLKGTVDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGFVFFIGNTAFTWSSKKQRIVTLSTCEVECVAAASCVCHAIWLRNLLKTIGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVHVEYVKSEDQIADIFTKLLKVNVFNNGTSKELSGDGSQALSSDRPRKRFLRCRT*

Homology

[Close]

BLAST of CSPI03G21690.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.6e-35
Identity = 77/185 (41.62%), Postives = 105/185 (56.76%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILRYLKGTVDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGFVF 60
            M  PT  HL+  KRILRYL GT ++G+F        L  Y D+DWAGD +D  ST+G++ 
Sbjct: 1273 MHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIV 1332

Query: 61   FIGNTAFTWSSKKQRIVTLSTCEVECVAAASCVCHAIWLRNLLKTIGILQDDPTVIHVDN 120
            ++G+   +WSSKKQ+ V  S+ E E  + A+      W+ +LL  +GI    P VI+ DN
Sbjct: 1333 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDN 1392

Query: 121  KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVHVEYVKSEDQIADIFTKLLKVNVFN 180
                 L  NPVFH R KHI   +HFIR+ +    + V +V + DQ+AD  TK L    F 
Sbjct: 1393 VGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQ 1452

Query: 181  NGTSK 186
            N  SK
Sbjct: 1453 NFASK 1457

[Close]

BLAST of CSPI03G21690.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.4e-35
Identity = 76/185 (41.08%), Postives = 104/185 (56.22%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILRYLKGTVDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGFVF 60
            M  PT  H    KR+LRYL GT D+G+F        L  Y D+DWAGDT+D  ST+G++ 
Sbjct: 1256 MHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIV 1315

Query: 61   FIGNTAFTWSSKKQRIVTLSTCEVECVAAASCVCHAIWLRNLLKTIGILQDDPTVIHVDN 120
            ++G+   +WSSKKQ+ V  S+ E E  + A+      W+ +LL  +GI    P VI+ DN
Sbjct: 1316 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDN 1375

Query: 121  KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVHVEYVKSEDQIADIFTKLLKVNVFN 180
                 L  NPVFH R KHI   +HFIR+ +    + V +V + DQ+AD  TK L    F 
Sbjct: 1376 VGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQ 1435

Query: 181  NGTSK 186
            N + K
Sbjct: 1436 NFSRK 1440

[Close]

BLAST of CSPI03G21690.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 141.7 bits (356), Expect = 9.2e-33
Identity = 72/165 (43.64%), Postives = 105/165 (63.64%), Query Frame = 0


Query: 13   KRILRYLKGTVDYGLFYSSSKEF--KLEGYCDSDWAGDTNDRKSTSGFVF-FIGNTAFTW 72
            KR+LRYLKGT+D  L +  +  F  K+ GY DSDWAG   DRKST+G++F         W
Sbjct: 1222 KRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICW 1281

Query: 73   SSKKQRIVTLSTCEVECVAAASCVCHAIWLRNLLKTIGILQDDPTVIHVDNKSTIALAKN 132
            ++K+Q  V  S+ E E +A    V  A+WL+ LL +I I  ++P  I+ DN+  I++A N
Sbjct: 1282 NTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANN 1341

Query: 133  PVFHDRSKHIDTRFHFIRDCISRKEVHVEYVKSEDQIADIFTKLL 175
            P  H R+KHID ++HF R+ +    + +EY+ +E+Q+ADIFTK L
Sbjct: 1342 PSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPL 1386

[Close]

BLAST of CSPI03G21690.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.3e-30
Identity = 73/189 (38.62%), Postives = 114/189 (60.32%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILRYLKGTVDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGFVF 60
            +E+P   H +  K ILRYL+GT    L +  S    L+GY D+D AGD ++RKS++G++F
Sbjct: 1140 LENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI-LKGYTDADMAGDIDNRKSSTGYLF 1199

Query: 61   FIGNTAFTWSSKKQRIVTLSTCEVECVAAASCVCHAIWLRNLLKTIGILQDDPTVIHVDN 120
                 A +W SK Q+ V LST E E +AA       IWL+  L+ +G+ Q +  V++ D+
Sbjct: 1200 TFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKE-YVVYCDS 1259

Query: 121  KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVHVEYVKSEDQIADIFTKLLKVNVFN 180
            +S I L+KN ++H R+KHID R+H+IR+ +  + + V  + + +  AD+ TK++  N F 
Sbjct: 1260 QSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFE 1319

Query: 181  NGTSKELSG 190
                KEL G
Sbjct: 1320 --LCKELVG 1324

[Close]

BLAST of CSPI03G21690.1 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-17
Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 4   PTTTHLKVAKRILRYLKGTVDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGFVFFIG 63
           P  TH +  KR+LRYL+ T  YGL ++ +   KL GY D+DWAGD   R+STSG++F + 
Sbjct: 38  PCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLN 97

Query: 64  NTAFTWSSKKQRIVTLSTCEVECVAAASCVCHAIWL 100
               +W SKKQR V LS+ E E +A +     A+WL
Sbjct: 98  GGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

[Close]

BLAST of CSPI03G21690.1 vs. ExPASy TrEMBL
Match: A0A5D3BU42 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00570 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.8e-93
Identity = 169/181 (93.37%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILRYLKGTVDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGFVF 60
            MESPTTTHLKVAKRILRYL+GT+DYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSG+VF
Sbjct: 1040 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 1099

Query: 61   FIGNTAFTWSSKKQRIVTLSTCEVECVAAASCVCHAIWLRNLLKTIGILQDDPTVIHVDN 120
            FIGNTAFTWSSKKQ IVTLSTCE E VAAASCVCHA+WLRNLLKT+GILQ+DPTVIHVDN
Sbjct: 1100 FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHVDN 1159

Query: 121  KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVHVEYVKSEDQIADIFTKLLKVNVFN 180
            KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEV VEYVK+EDQIADIFTK LKVNVFN
Sbjct: 1160 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 1219

Query: 181  N 182
            N
Sbjct: 1220 N 1220

[Close]

BLAST of CSPI03G21690.1 vs. ExPASy TrEMBL
Match: A0A5A7V3X9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003030 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 6.3e-93
Identity = 168/181 (92.82%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILRYLKGTVDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGFVF 60
            MESPTTTHLKVAKRILRYL+GT+DYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSG+VF
Sbjct: 1143 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 1202

Query: 61   FIGNTAFTWSSKKQRIVTLSTCEVECVAAASCVCHAIWLRNLLKTIGILQDDPTVIHVDN 120
            FIGNTAFTWSSKKQ IVTLSTCE E VAAASCVCHA+WLRNLLKT+GILQ+DPTVIH+DN
Sbjct: 1203 FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHIDN 1262

Query: 121  KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVHVEYVKSEDQIADIFTKLLKVNVFN 180
            KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEV VEYVK+EDQIADIFTK LKVNVFN
Sbjct: 1263 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 1322

Query: 181  N 182
            N
Sbjct: 1323 N 1323

[Close]

BLAST of CSPI03G21690.1 vs. ExPASy TrEMBL
Match: A0A5A7SJX6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G002010 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 6.3e-93
Identity = 168/181 (92.82%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILRYLKGTVDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGFVF 60
            MESPTTTHLKVAKRILRYL+GT+DYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSG+VF
Sbjct: 1143 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 1202

Query: 61   FIGNTAFTWSSKKQRIVTLSTCEVECVAAASCVCHAIWLRNLLKTIGILQDDPTVIHVDN 120
            FIGNTAFTWSSKKQ IVTLSTCE E VAAASCVCHA+WLRNLLKT+GILQ+DPTVIH+DN
Sbjct: 1203 FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHIDN 1262

Query: 121  KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVHVEYVKSEDQIADIFTKLLKVNVFN 180
            KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEV VEYVK+EDQIADIFTK LKVNVFN
Sbjct: 1263 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 1322

Query: 181  N 182
            N
Sbjct: 1323 N 1323

[Close]

BLAST of CSPI03G21690.1 vs. ExPASy TrEMBL
Match: A0A5D3D497 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00810 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 6.3e-93
Identity = 168/181 (92.82%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILRYLKGTVDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGFVF 60
            MESPTTTHLKVAKRILRYL+GT+DYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSG+VF
Sbjct: 1143 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 1202

Query: 61   FIGNTAFTWSSKKQRIVTLSTCEVECVAAASCVCHAIWLRNLLKTIGILQDDPTVIHVDN 120
            FIGNTAFTWSSKKQ IVTLSTCE E VAAASCVCHA+WLRNLLKT+GILQ+DPTVIH+DN
Sbjct: 1203 FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHIDN 1262

Query: 121  KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVHVEYVKSEDQIADIFTKLLKVNVFN 180
            KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEV VEYVK+EDQIADIFTK LKVNVFN
Sbjct: 1263 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 1322

Query: 181  N 182
            N
Sbjct: 1323 N 1323

[Close]

BLAST of CSPI03G21690.1 vs. ExPASy TrEMBL
Match: A0A5D3D557 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold481G00080 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 6.3e-93
Identity = 168/181 (92.82%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1   MESPTTTHLKVAKRILRYLKGTVDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGFVF 60
           MESPTTTHLKVAKRILRYL+GT+DYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSG+VF
Sbjct: 583 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 642

Query: 61  FIGNTAFTWSSKKQRIVTLSTCEVECVAAASCVCHAIWLRNLLKTIGILQDDPTVIHVDN 120
           FIGNTAFTWSSKKQ IVTLSTCE E VAAASCVCHA+WLRNLLKT+GILQ+DPTVIH+DN
Sbjct: 643 FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHIDN 702

Query: 121 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVHVEYVKSEDQIADIFTKLLKVNVFN 180
           KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEV VEYVK+EDQIADIFTK LKVNVFN
Sbjct: 703 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 762

Query: 181 N 182
           N
Sbjct: 763 N 763

[Close]

BLAST of CSPI03G21690.1 vs. NCBI nr
Match: TYK03241.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 350.5 bits (898), Expect = 9.9e-93
Identity = 169/181 (93.37%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILRYLKGTVDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGFVF 60
            MESPTTTHLKVAKRILRYL+GT+DYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSG+VF
Sbjct: 1040 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 1099

Query: 61   FIGNTAFTWSSKKQRIVTLSTCEVECVAAASCVCHAIWLRNLLKTIGILQDDPTVIHVDN 120
            FIGNTAFTWSSKKQ IVTLSTCE E VAAASCVCHA+WLRNLLKT+GILQ+DPTVIHVDN
Sbjct: 1100 FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHVDN 1159

Query: 121  KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVHVEYVKSEDQIADIFTKLLKVNVFN 180
            KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEV VEYVK+EDQIADIFTK LKVNVFN
Sbjct: 1160 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 1219

Query: 181  N 182
            N
Sbjct: 1220 N 1220

[Close]

BLAST of CSPI03G21690.1 vs. NCBI nr
Match: TYK18362.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92
Identity = 168/181 (92.82%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILRYLKGTVDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGFVF 60
            MESPTTTHLKVAKRILRYL+GT+DYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSG+VF
Sbjct: 1143 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 1202

Query: 61   FIGNTAFTWSSKKQRIVTLSTCEVECVAAASCVCHAIWLRNLLKTIGILQDDPTVIHVDN 120
            FIGNTAFTWSSKKQ IVTLSTCE E VAAASCVCHA+WLRNLLKT+GILQ+DPTVIH+DN
Sbjct: 1203 FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHIDN 1262

Query: 121  KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVHVEYVKSEDQIADIFTKLLKVNVFN 180
            KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEV VEYVK+EDQIADIFTK LKVNVFN
Sbjct: 1263 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 1322

Query: 181  N 182
            N
Sbjct: 1323 N 1323

[Close]

BLAST of CSPI03G21690.1 vs. NCBI nr
Match: KAA0056915.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92
Identity = 168/181 (92.82%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1   MESPTTTHLKVAKRILRYLKGTVDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGFVF 60
           MESPTTTHLKVAKRILRYL+GT+DYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSG+VF
Sbjct: 111 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 170

Query: 61  FIGNTAFTWSSKKQRIVTLSTCEVECVAAASCVCHAIWLRNLLKTIGILQDDPTVIHVDN 120
           FIGNTAFTWSSKKQ IVTLSTCE E VAAASCVCHA+WLRNLLKT+GILQ+DPTVIH+DN
Sbjct: 171 FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHIDN 230

Query: 121 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVHVEYVKSEDQIADIFTKLLKVNVFN 180
           KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEV VEYVK+EDQIADIFTK LKVNVFN
Sbjct: 231 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 290

Query: 181 N 182
           N
Sbjct: 291 N 291

[Close]

BLAST of CSPI03G21690.1 vs. NCBI nr
Match: TYK06895.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92
Identity = 168/181 (92.82%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILRYLKGTVDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGFVF 60
            MESPTTTHLKVAKRILRYL+GT+DYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSG+VF
Sbjct: 1143 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 1202

Query: 61   FIGNTAFTWSSKKQRIVTLSTCEVECVAAASCVCHAIWLRNLLKTIGILQDDPTVIHVDN 120
            FIGNTAFTWSSKKQ IVTLSTCE E VAAASCVCHA+WLRNLLKT+GILQ+DPTVIH+DN
Sbjct: 1203 FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHIDN 1262

Query: 121  KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVHVEYVKSEDQIADIFTKLLKVNVFN 180
            KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEV VEYVK+EDQIADIFTK LKVNVFN
Sbjct: 1263 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 1322

Query: 181  N 182
            N
Sbjct: 1323 N 1323

[Close]

BLAST of CSPI03G21690.1 vs. NCBI nr
Match: TYK13816.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92
Identity = 168/181 (92.82%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1    MESPTTTHLKVAKRILRYLKGTVDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGFVF 60
            MESPTTTHLKVAKRILRYL+GT+DYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSG+VF
Sbjct: 1168 MESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVF 1227

Query: 61   FIGNTAFTWSSKKQRIVTLSTCEVECVAAASCVCHAIWLRNLLKTIGILQDDPTVIHVDN 120
            FIGNTAFTWSSKKQ IVTLSTCE E VAAASCVCHA+WLRNLLKT+GILQ+DPTVIH+DN
Sbjct: 1228 FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHIDN 1287

Query: 121  KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVHVEYVKSEDQIADIFTKLLKVNVFN 180
            KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEV VEYVK+EDQIADIFTK LKVNVFN
Sbjct: 1288 KSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFN 1347

Query: 181  N 182
            N
Sbjct: 1348 N 1348

[Close]

BLAST of CSPI03G21690.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 114.8 bits (286), Expect = 8.6e-26
Identity = 53/147 (36.05%), Postives = 88/147 (59.86%), Query Frame = 0


Query: 2   ESPTTTHLKVAKRILRYLKGTVDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGFVFF 61
           E+P   H +   +IL Y+KGTV  GLFYSS  E +L+ + D+ +    + R+ST+G+  F
Sbjct: 407 EAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMF 466

Query: 62  IGNTAFTWSSKKQRIVTLSTCEVECVAAASCVCHAIWLRNLLKTIGILQDDPTVIHVDNK 121
           +G +  +W SKKQ++V+ S+ E E  A +      +WL    + + +    PT++  DN 
Sbjct: 467 LGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNT 526

Query: 122 STIALAKNPVFHDRSKHIDTRFHFIRD 149
           + I +A N VFH+R+KHI++  H +R+
Sbjct: 527 AAIHIATNAVFHERTKHIESDCHSVRE 553

[Close]

BLAST of CSPI03G21690.1 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 5.6e-17
Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 1   MESPTTTHLKVAKRILRYLKGTVDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGFVF 60
           M  PT     + KR+LRY+KGT+ +GL+   + +  ++ +CDSDWAG T+ R+ST+GF  
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187

Query: 61  FIGNTAFTWSSKKQRIVTLSTCEVECVAAASCVCHAIW 99
           F+G    +WS+K+Q  V+ S+ E E  A A       W
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of CSPI03G21690.1 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-07
Identity = 22/53 (41.51%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 6  TTHLKVAKRILRYLKGTVDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGF 59
          T  ++   ++L Y+KGTV  GLFYS++ + +L+ + DSDWA   + R+S +GF
Sbjct: 26 TAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of CSPI03G21690.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	2.6e-35	41.62	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.4e-35	41.08	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	9.2e-33	43.64	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	3.3e-30	38.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	1.9e-17	45.83	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of CSPI03G21690.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BU42	4.8e-93	93.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V3X9	6.3e-93	92.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SJX6	6.3e-93	92.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3D497	6.3e-93	92.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3D557	6.3e-93	92.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of CSPI03G21690.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03241.1	9.9e-93	93.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK18362.1	1.3e-92	92.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0056915.1	1.3e-92	92.82	retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m...	[more]
TYK06895.1	1.3e-92	92.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK13816.1	1.3e-92	92.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of CSPI03G21690.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.6e-26	36.05	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	5.6e-17	39.80	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	1.1e-07	41.51	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 51..175
None	No IPR available	PANTHER	PTHR11439:SF355	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 51..175
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 38..174 e-value: 1.47082E-82 score: 239.678
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 5..144

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G21690	CSPI03G21690	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G21690.1.cds1	CSPI03G21690.1.cds1	CDS
CSPI03G21690.1.cds2	CSPI03G21690.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G21690.1	CSPI03G21690.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding