CSPI03G18360.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI03G18360.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 13998798 .. 13999079 (+)
Sequence length	282
RNA-Seq Expression	CSPI03G18360.1
Synteny	CSPI03G18360.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGGCCTCACAACACATTCTAAATCTAGTGTTGTGGCATACGAGCGCGACCTGAGCAGCCCTGATACCTCAACTGAAATGCCAGAACGCTCACTCTTGTGTTGTACCAACGCTCACTCTTGTGTTGTACCAACACCCCAATCCTATTCACTCTATGCAATGGAACAAAGATGCAGCTGCCTAGACGTCCTACGTGAGATTCTCCGTCAAGTAACGCGTCAAAAAGCAAAATTAAAAGACAAACACAAGGAAAATGTATTGCAGGGTGTAGAGGAATAA

mRNA sequence

ATGCTCGGCCTCACAACACATTCTAAATCTAGTGTTGTGGCATACGAGCGCGACCTGAGCAGCCCTGATACCTCAACTGAAATGCCAGAACGCTCACTCTTGTGTTGTACCAACGCTCACTCTTGTGTTGTACCAACACCCCAATCCTATTCACTCTATGCAATGGAACAAAGATGCAGCTGCCTAGACGTCCTACGTGAGATTCTCCGTCAAGTAACGCGTCAAAAAGCAAAATTAAAAGACAAACACAAGGAAAATGTATTGCAGGGTGTAGAGGAATAA

Coding sequence (CDS)

ATGCTCGGCCTCACAACACATTCTAAATCTAGTGTTGTGGCATACGAGCGCGACCTGAGCAGCCCTGATACCTCAACTGAAATGCCAGAACGCTCACTCTTGTGTTGTACCAACGCTCACTCTTGTGTTGTACCAACACCCCAATCCTATTCACTCTATGCAATGGAACAAAGATGCAGCTGCCTAGACGTCCTACGTGAGATTCTCCGTCAAGTAACGCGTCAAAAAGCAAAATTAAAAGACAAACACAAGGAAAATGTATTGCAGGGTGTAGAGGAATAA

Protein sequence

MLGLTTHSKSSVVAYERDLSSPDTSTEMPERSLLCCTNAHSCVVPTPQSYSLYAMEQRCSCLDVLREILRQVTRQKAKLKDKHKENVLQGVEE*

Homology

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BLAST of CSPI03G18360.1 vs. NCBI nr
Match: KAE8650502.1 (hypothetical protein Csa_023692, partial [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 7.3e-19
Identity = 53/60 (88.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 34 LCCTNAHSCVVPTPQSYSLYAMEQRCSCLDVLREILRQVTRQKAKLKDKHKENVLQGVEE 93
          L C NAHSCVVPTPQSYSLYAMEQRCS LDVLREILRQV RQK K KDKHKENVL GVEE
Sbjct: 7  LKCQNAHSCVVPTPQSYSLYAMEQRCSRLDVLREILRQVMRQKEKFKDKHKENVLLGVEE 66

The following BLAST results are available for this feature:

BLAST of CSPI03G18360.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G18360.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G18360.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650502.1	7.3e-19	88.33	hypothetical protein Csa_023692, partial [Cucumis sativus]	[more]

BLAST of CSPI03G18360.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 62..82

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G18360	CSPI03G18360	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G18360.1.cds1	CSPI03G18360.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G18360.1	CSPI03G18360.1-protein	polypeptide