CSPI03G06960.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI03G06960.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptioncytochrome c oxidase subunit 6a, mitochondrial
LocationChr3: 6203560 .. 6208647 (-)
Sequence length824
RNA-Seq ExpressionCSPI03G06960.1
SyntenyCSPI03G06960.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGCTTGGTCATTTCGTGGACTCGGCAATTTGTGAGAGAGAGAACCAAAGACAAAATGGCAATGGCGTCGATCCGATCCAATCTTCTTCGCGCCGCCCTACGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGACGCTCGTAAGTCTCTCTCTCTCTCTCTTAGGTATTTTTTTTTTAATTGCGATGGTATGTGCACTGCAACTGGTTCACGTCTCTCTCTATTTGCTTGTCTTTATTGACGGATTTTTTTTCTTGTTACTTTCAGCAACTTTTCTTAGTCCATTATATGTTTTAATTTTATTCATTTTCCTGCCCTGTTTTCATCTGACGAAATGGGGGAAAGAAGGACGACGTTGATTATTGAATCATGTTCAAAATTTTGTTCCAAAATAATTTGATTCGATGTTTTTCGTTCCTTTTAGATTGATAGTCTTGCCTTGCAAAAGGAGGTGTTTTGAAATTTGAACACAGATTTAAATGTTATTCAATAGTTTTTTAAAATAATCGAATGGGATTATATACATTATATTTGACAATTAACTGTGGATGGGGTTTCCAGCCGCTAAGAAGTAGATTTGGTTTAAAGCTTAGGAAAGAAGATGGCAAAGGGGAATGATCTATTACTGAGTGGCAACACTATAATTGAATAAAAAATGCTCTAGAAAGTCTTGTATTTTGTGGTAGATTTAATTTACCTCTGATTTCGAGTAAGGCACGGTGGAAGGGAAACACAAATGCATCTAATTTATTAGAGTGTTAAGACCTTTAGTCAATGAACTCTTCTCCAGGTTGAAGTTAGTGAAGGTTTTTCACATCTGATGCTTCTTTTTTGATTAATTCTTTTCGGGAATGGAGGTCATGGAAGTTTTTCCGCTTCTAATCATATATCTGTTTCTTCTTTCTCTCACTCCTCCCCACATTTTCTCTCTCACACGTTTATCGGTTGTGGGGGGGGGGGGGGGTTTTTTTTTTTTTTGGGGGGGGGAAAAAATTTTTTTTTCAAAAAAAGAAAAAAAAAAAAAACAGGGGCGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGATTTCTTCTTTTTTTGGAGTAGGTAAGTACACTGCTGGTGCTAAGCTGTTTCAGTGTTGTGAATGTATTTTCTAGTAATTCACCAGAACATATACTTTTGATGCCTCGTTACATTTGTTGGGTCATGGTTGCATATGTTTTGTTAGTTTTAAATACTATTTCATTCTTATATTGTTCAAGCACGTAGGAAGAAAAAATTGAGTGCAAGAGTGCTATGACGCTTGTACTCCTTATGTTTGATCTCTCACCTTCCTTTTCTTATGTCAGGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGTAACCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGTAAGCTATAACTTCAGTCAATTTATACTTTTTCCTCAAGTGCTGAGTACCTTAGTAGAATTGTGGAATTATGTATTGTACTCTCACGTGTTAACCATTTATTTTTGTTTGGGTTTTCACTGTATGCAGGCATATCCATATATGCACATACGCAATAAAGAGTTTCCTTGGGGTAAGTTTCCGCTTCATTAGAAGTTATATGACATCTTGCATATCTCTTTGCAATTGCTATTTGGGTTTTATAACATATTTTAAGTCAAAATGTATAATTTCCATGAAGTGGTGGATTTTTTTTATTTGATTTTGGTGCTAGTTGTTTCCTTAAAATGAACTAGTAAAGCATTGTTCTTATGAATTTAAATTTAGATGTAATGCAGAGTTTCCAATAAAACAGTGATTATGCTCCTTTGCAAACTCAGTAATAATTATTTGTGTGTTTTCTTTATTTGGATTGGACATTGTTCATTGTAATCAGAAAGAAAAGTTGATTACCAGTCCTTATTTTCTCTGTTTACGTTGTTTGATCACAATATTAGTAAAATAGTGTTGGAATCTGGAAGCTGAATGTAAGGCCCCCTATCATCCACACGTATAAGAGGAGGGGTAAGAAGGTAAATGCACAGGCAAGTAATGATGATGAATAATTTGATAGTGATCATGCAAGTGGGGCCCATGGGAAGGAAAGATAGGGAGTGCTATATATAGGTCTTTATTGGGATCAGGTAGCTAGGTCAATTTTTATTCCATCTTTCGGGTGTAAAGGCTGCTGTATCCTGAAGGTTTCTCCAGCTCATTGCGAGGGAGCTGGGTTTTCTTTATTATTACATTGTGACTGTTGTTAACCTTGTTGGCTTATATTTGTCTATAATCAGCAAAGTGCTGCCTCTGTTTATAGCCTTTTGGTTGGGATATCTTTGTTGTTCTCGTTAGTAACCTAACAACAAACCATCCTAATAGTTTGCCAAGTAAATGTACAGCTATTATGTAACCAATAGATTTACTACTAACTCAGCAGCTAGTAACTAATATGCTCGTAAGTACCTTGTTCAGCTTGCTAGCAATCTTTAGACCTAGTTTATTACCTTCTTTCATTAATCCAACTCTCATTTAACTTTGAAACTCTTCAACCCCAAATGTCAAATGGGGTATTTCAACGGCTTCCTCTTTTGGTTGCTTGATCATCTCAGGGTTTTATGGATACTTCCTAGTTCCTGGTATAGAACTGTTTATTATTATTGTTGTTGTTGTTGTTGTTGTTTATTTTAGATTTTTAGGACAAGAAACAAGTATGTATTACCCATTAACAAAAGAGACAGCCGGGCAGGGAGTTGAGGGCCTACAAAACTAATGAAGAAGAGTCTTCCAATTGTTAATAATCATAAGAAGGCTATAATTTCCAAAAAAAGAAAAAATGGTGTAATTTATGCACCACCAAGAGTTTGTATGCTGGATAAAGACCAGAAAGAATCAAGAGAAGCAAATTTATCTTCAAACTTCTTGCTATTTCTTTCTTTTCGTAGACCCAAGAAGAGCATGAGTATCACATCTTCAACTGATTTTGCCCACCCACAAAATCTACCACCCTCCAACTCGTTCATCATCCAATCATCAATCATCTTGGGAAGGCTTCCTACCGCCCCAAATATTTAGAAAAGTGAAGAACACGCTTTTTAGCAACAAACTCTCAATATAAAAACTGAAAACAAGTGATACACCATGTCCACCTCTATAAGGCAAGATAGCACATGGAAGGAGAAAGAGACCAACTATAGAACTTCCTTTGGGGCTTCTCATGGGTATTCAAGCTTCTAAAACCAGTGACTAGAGGAACCTTCTGTCCCTAGGATCCCTCTCCACTCCCCTAAACACCCTACTGTTTTGCTTACCCCACAGAACTTCTGAGATCACAAATAGTATGTGATAATAGTATGTGTTTGAGTAAACTATCTAAGTTTGAGAAGAAAATAGTAAACACTATAGCAAAGAATAAAAAAATGATAATGTAAAACATAAAAACTTGTAGCAGTCAGCAGATAGTAAATACTATAGCAAATAGGGGTTTTGAAATAGTGTTGATGGTAGTTAATTGGAGACTAGAAGATAGCGTTTACTGGTGGTTATTATAATCTTAAATAGTTCTTCCTCCAAACAACCCCAAAGAGGTTATCCACTGTTCTAGCTTTCGAATAAGTTCTAGCCACAAAGAAGTAGTTGATAATTGGGAACTTTCTTTACTCTTTTCATAGAACTCTAAAAAATGATCTTGTAAAGGGGAGTCACCAAACTAATAGGCTGTATGCACAACTCTAGCTGCCTTCTTCTTCTTTTGTCTTTTCTCGTACAAGTCTTTTTTCCGTTGCTTGTTGACCGGTCTTCCCTAAAGAGTCGGTCTCTTTCGACAATTGATTCCGAAGAAAGTGAAGGTTTTTCTTTGCAAGTCTTACAAGGTTGCGCTAACACGATGGATTGGCTTGTGAAGAACTTGCCCTTACTTGGTTTGTTTTGCGGTATTCTTTGTTGGAAGGTGAAGGAAGACTTGGATCATATTCTCTGGCGTTGTAAGTTATTCAGAGCTATGTGGGGTTACTCTATTAGACGATTGGGTTCTTGCATGCTCGACATAGGGTTACTAATGATATGACTTGGCAAGTTTCTCCTCCATTTTGCCTTTTTTGGAAGGAGGGGATGCTCTTTACGAATGGCCAGGGTGTGGTATTCTTTGGGTTTTGTAGGGGAATAAAATAGCACGATGTTGAGGGACTATTTTGATGTTTGGTCCTTTGTTTTAGTTATACCACATTTTGTTTTGGGTTTCAGTTTCAAAGACCTTTTGTAACTATTCTATTGATTCTAGTTTGCATAATTGAAGTCTCGTTCTTTTGGAAGTTGTTCTTAAACTTTTTTTGGGGAACTGTTACTAACAGTTGCTTTCCTCATTTATGAAAAATGGCTGAATTTGATGGATGATCTGATATTCATTCTCATCTTTCCTCTATGTTCCTTACTCAATTGCTCGTTCACTGTTTACTATCCATTGTGAAAATAATATTGTTTTTATTGATTTAAAAAATAATATATGTATTCCTTGTGCATCAGGTCCTGATGGTCTCTTTGAGGTGAAGCACCACTGAGAATTACTCTTGGGTTCAAAAAGCGGATCAGAGTTCTCATTCCTGTTCCATATCAGAAAGACTTCATGGACTGGTTGGTTTAGATTTTTTTCTCTGCAAAGGAAAAGCCATGGCATGGCCATTTTGCATTTGTTTAAATGCTATCAGAATATTATGTGAATCGTTTAATTTTTTTCTGTCACAGCCATCCTTCCTGATTAATAAGATAAACTTTCTTTCCATTGTCCTGAAAGGTTTGCAGTAAGGTGTGCTTGGATTGAAAAATGAGCTTGTATAACTACCGGTACTTAATGGGTAATAATTATTACTTGGGTGAACTACAACAATTACTACGTTTTATCAACACAGTTGGATCATTCTCATAGTTTAAATTGTAAACCGAACATGGTTTATGTTTTTTTTTTTTTTCTAATTAAAAGATAATATGTTTATATAATAAGAAGTACTATATTTCTAAAGGGGTTTTAAAAAA

mRNA sequence

GGGCTTGGTCATTTCGTGGACTCGGCAATTTGTGAGAGAGAGAACCAAAGACAAAATGGCAATGGCGTCGATCCGATCCAATCTTCTTCGCGCCGCCCTACGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGACGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGTAACCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATATCCATATATGCACATACGCAATAAAGAGTTTCCTTGGGGTCCTGATGGTCTCTTTGAGGTGAAGCACCACTGAGAATTACTCTTGGGTTCAAAAAGCGGATCAGAGTTCTCATTCCTGTTCCATATCAGAAAGACTTCATGGACTGGTTGGTTTAGATTTTTTTCTCTGCAAAGGAAAAGCCATGGCATGGCCATTTTGCATTTGTTTAAATGCTATCAGAATATTATGTGAATCGTTTAATTTTTTTCTGTCACAGCCATCCTTCCTGATTAATAAGATAAACTTTCTTTCCATTGTCCTGAAAGGTTTGCAGTAAGGTGTGCTTGGATTGAAAAATGAGCTTGTATAACTACCGGTACTTAATGGGTAATAATTATTACTTGGGTGAACTACAACAATTACTACGTTTTATCAACACAGTTGGATCATTCTCATAGTTTAAATTGTAAACCGAACATGGTTTATGTTTTTTTTTTTTTTCTAATTAAAAGATAATATGTTTATATAATAAGAAGTACTATATTTCTAAAGGGGTTTTAAAAAA

Coding sequence (CDS)

ATGGCAATGGCGTCGATCCGATCCAATCTTCTTCGCGCCGCCCTACGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGACGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGTAACCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATATCCATATATGCACATACGCAATAAAGAGTTTCCTTGGGGTCCTGATGGTCTCTTTGAGGTGAAGCACCACTGA

Protein sequence

MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH*
Homology
[Close]
BLAST of CSPI03G06960.1 vs. ExPASy Swiss-Prot
Match: Q9T070 (Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX6A PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.5e-33
Identity = 70/99 (70.71%), Postives = 78/99 (78.79%), Query Frame = 0 

Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIVTCSILAF 60
          MA A +RS L RA  R A + SV PKR F+SSA HDDA E AKWEKITY GI +C+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          Y LSKGH H E+PPAYP+MHIRNKEFPWGPDGLFEVKH+
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFEVKHN 99

[Close]
BLAST of CSPI03G06960.1 vs. ExPASy TrEMBL
Match: A0A1S3BPM0 (cytochrome c oxidase subunit 6a, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491837 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.0e-49
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMASIRSN LRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY
Sbjct: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of CSPI03G06960.1 vs. ExPASy TrEMBL
Match: A0A0A0L3I0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115610 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.6e-49
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 3  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 62
          MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL
Sbjct: 1  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNL 60

Query: 63 SKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          SKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 SKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 96

[Close]
BLAST of CSPI03G06960.1 vs. ExPASy TrEMBL
Match: A0A6J1ERW3 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111435960 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 92/98 (93.88%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMA+IRSNLLRAA RGASRNS QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPH+EEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of CSPI03G06960.1 vs. ExPASy TrEMBL
Match: A0A6J1J8L1 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111482732 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.2e-46
Identity = 91/98 (92.86%), Postives = 94/98 (95.92%), Query Frame = 0 

Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMA IRSNLLRAA RGASRN  QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFY
Sbjct: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPH+EEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of CSPI03G06960.1 vs. ExPASy TrEMBL
Match: A0A6J1KMD3 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111495450 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 4.6e-46
Identity = 89/98 (90.82%), Postives = 93/98 (94.90%), Query Frame = 0 

Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMA+IRSNLLRAA+RGASRNS QPKRGFASSAHDDA ETAKWEKITYAGI  C+ LAFY
Sbjct: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of CSPI03G06960.1 vs. NCBI nr
Match: XP_011650608.1 (cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus] >KAE8650204.1 hypothetical protein Csa_009645 [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 6.4e-50
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY
Sbjct: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of CSPI03G06960.1 vs. NCBI nr
Match: XP_008450167.1 (PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 4.2e-49
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMASIRSN LRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY
Sbjct: 1  MAMASIRSNFLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of CSPI03G06960.1 vs. NCBI nr
Match: XP_038905594.1 (cytochrome c oxidase subunit 6a, mitochondrial [Benincasa hispida])

HSP 1 Score: 200.7 bits (509), Expect = 6.0e-48
Identity = 93/98 (94.90%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMASIRSNLLRAA+RGASRNS QPKRGFASSAHDDARETAKWEKITYAGI TC+ILAFY
Sbjct: 1  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCTILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of CSPI03G06960.1 vs. NCBI nr
Match: XP_023551866.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.5 bits (506), Expect = 1.3e-47
Identity = 93/98 (94.90%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMA+IRSNLLRAALRGASRNS QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFY
Sbjct: 1  MAMATIRSNLLRAALRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPH+EEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of CSPI03G06960.1 vs. NCBI nr
Match: XP_022929363.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG6577328.1 Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198.0 bits (502), Expect = 3.9e-47
Identity = 92/98 (93.88%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFY 60
          MAMA+IRSNLLRAA RGASRNS QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          NLSKGHPH+EEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFEVKHH 98

[Close]
BLAST of CSPI03G06960.1 vs. TAIR 10
Match: AT4G37830.1 (cytochrome c oxidase-related )

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-34
Identity = 70/99 (70.71%), Postives = 78/99 (78.79%), Query Frame = 0 

Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIVTCSILAF 60
          MA A +RS L RA  R A + SV PKR F+SSA HDDA E AKWEKITY GI +C+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          Y LSKGH H E+PPAYP+MHIRNKEFPWGPDGLFEVKH+
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFEVKHN 99

[Close]
BLAST of CSPI03G06960.1 vs. TAIR 10
Match: AT4G37830.2 (cytochrome c oxidase-related )

HSP 1 Score: 114.8 bits (286), Expect = 4.0e-26
Identity = 61/99 (61.62%), Postives = 68/99 (68.69%), Query Frame = 0 

Query: 1  MAMASIRSNLLRAALRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIVTCSILAF 60
          MA A +RS L RA  R A + SV PKR F+SSA HDDA E AKWEKITY GI +C+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH 99
          Y LSKGH H E+PP          EFPWGPDGLFEVKH+
Sbjct: 61 YVLSKGHHHGEDPP----------EFPWGPDGLFEVKHN 89

The following BLAST results are available for this feature:
BLAST of CSPI03G06960.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9T0701.5e-3370.71Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 G... [more]
BLAST of CSPI03G06960.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BPM02.0e-4997.96cytochrome c oxidase subunit 6a, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A0A0L3I02.6e-49100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115610 PE=3 SV=1[more]
A0A6J1ERW31.9e-4793.88cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=366... [more]
A0A6J1J8L11.2e-4692.86cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 ... [more]
A0A6J1KMD34.6e-4690.82cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 ... [more]
BLAST of CSPI03G06960.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011650608.16.4e-50100.00cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus] >KAE... [more]
XP_008450167.14.2e-4997.96PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo][more]
XP_038905594.16.0e-4894.90cytochrome c oxidase subunit 6a, mitochondrial [Benincasa hispida][more]
XP_023551866.11.3e-4794.90cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo][more]
XP_022929363.13.9e-4793.88cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG657... [more]
BLAST of CSPI03G06960.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G37830.11.1e-3470.71cytochrome c oxidase-related [more]
AT4G37830.24.0e-2661.62cytochrome c oxidase-related [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001349Cytochrome c oxidase, subunit VIaPIRSFPIRSF000277COX_VIacoord: 1..98
e-value: 1.5E-22
score: 76.8
IPR001349Cytochrome c oxidase, subunit VIaPFAMPF02046COX6Acoord: 34..88
e-value: 2.1E-6
score: 28.1
IPR001349Cytochrome c oxidase, subunit VIaPANTHERPTHR11504CYTOCHROME C OXIDASE POLYPEPTIDE VIAcoord: 1..98
IPR036418Cytochrome c oxidase, subunit VIa superfamilyGENE3D4.10.95.10Cytochrome c oxidase, subunit VIacoord: 29..98
e-value: 2.1E-15
score: 58.4
IPR036418Cytochrome c oxidase, subunit VIa superfamilySUPERFAMILY81411Mitochondrial cytochrome c oxidase subunit VIacoord: 30..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..37
NoneNo IPR availablePANTHERPTHR11504:SF6CYTOCHROME C OXIDASE SUBUNIT 6A1-RELATEDcoord: 1..98

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI03G06960CSPI03G06960gene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G06960.1.utr3p1CSPI03G06960.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G06960.1.cds4CSPI03G06960.1.cds4CDS
CSPI03G06960.1.cds3CSPI03G06960.1.cds3CDS
CSPI03G06960.1.cds2CSPI03G06960.1.cds2CDS
CSPI03G06960.1.cds1CSPI03G06960.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G06960.1.utr5p1CSPI03G06960.1.utr5p1five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI03G06960.1CSPI03G06960.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006123 mitochondrial electron transport, cytochrome c to oxygen
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0050790 regulation of catalytic activity
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005751 mitochondrial respiratory chain complex IV
molecular_function GO:0004129 cytochrome-c oxidase activity
molecular_function GO:0030234 enzyme regulator activity