CSPI03G06910.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI03G06910.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	SpoU_methylase domain-containing protein
Location	Chr3: 6152672 .. 6159135 (-)
Sequence length	1236
RNA-Seq Expression	CSPI03G06910.1
Synteny	CSPI03G06910.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAATTGAATCTCTAAAATCTATGCTGAGGTCACTTTGGCCCCTACATTTGAAGAGATTGCTATAGCACTAAACATTGAAACAAAAAGAAGCTGGGTGTATACTTAGGATTTGCAATGGTCTTTACAAAAAGAAGAAAAAAAATGAAAAAAATCCTGAAAAAAAAAACTGTGTTAGGCTGTGCCGGTGGAGTACGATAGAAGAATGCAATGCTCCTGCCTTTCCTGGTCCTCAAATCCGAAACTCGCCCCTTTCTTTCCTAAATCGAAGCTATCATCAATTAACATAGCAGAAGCCATCGATTTTACTGGAAGAATTCCTCTGCCTTCTCATGTTAAAGCCATCACCAGCATCTCCAACCCCTTCGTTAAGCACTGCGTCAAACTTCGTTTCAGTTCCTCTTATCGCCATTTCCATGGCTCCGTCGTTGTTGTTGGAGCTACTCCAATAAGGTTGTCTCTTATTCGGTTACTTTGCCCTCAATTTTTCTGGGTTCTGTTCATGGCTGTGTTCCTGATTGAAAAATCAAATTAGTGTATGCCGGCTTGTATTTTTTTAAAATTCTTTTTATCCTATAATTTCATAAGCTCTCGAGCAAGGGATTCTAAACCCTTGAATTTCTTTTGCAAATCTATCATATGGGTTAAATAATTTTCTAACATGGCCCATTAGTACTTCCCTCCTATTCATATTATTCTTATTGCCCATAAAAAAGTTGCGTCTTGTGTTTTGGTGGTGAATGTTTTGAAGAATCGAGTTCTTGGAATCAAGTACTGTGTAATAGCAAGCTTGTGACTTAATATTTTGGAAGCACCCTTCGGTGAGTTTGGCCCAAGGAGTTGAGAAACAGGAATATGGAAGTAGGAGTTCTCAACTCCACACCTTGTTTGGCTCAAGAAGTTGGTGGGTCTTGCCACTAACAAACACCAATTTATATCTTTTACATTGTAGGCCGAGGAGTTCACAAGTCTGTATATATCATAACTCCTTACTCTTCATTATTTAATTTTAAGTTTTGTCTATAGCTGTGTTTGCTTGTGACTGTTCTCTAATTGAAACATGATGAAGTTTCTGTTCTTTAAACTTTGGAAACTCAATAATGATTTAAAAAATAATCTAAAATAAAATAATGTAATCTGCATATTTTAGTTCACTGTTTTTGGAGAAACTTTATCTCATGATTTCCCCATGAGATAGTTTACTAAAACTTTTACATGAGATTAGATTTCTCTCCCCTTGGATCTTAGGAGTTCTAATTCTATCTTGTATCAGTTAATCTTTTTGAAGCAGTCATTCTTTGTGGTAAAATGTTTTGCTCAACATCATTTGGTTTGTATGCACTGACATCTAATTTAAGTCTTTATAGGGAAATTTGCAAGTTTCAAGAGTCTCTGCATGGTGTAACTTGTACATTGGAGTGCTTACTTCTGCTAGATGAGGTTGAGGTTCCTGAAGGACTAGTTAATTTAACTGTTCGTATTGTGAGGGTGAGCTCAGCTGTGATGAAAAAACTTTCTGGCTTGCAATCAACAGAATCCATTGATGCAATTGCGCTCATGAGAATACCTCCCAGTTTTTGTAGTGTAGATGGCAATGAAAAAGAAGTAGATTTTAAAAGATGGTTTCCATCTCCACATCGAATATTAGTCCTTGAGGGAATCCAGGTATTTCTTCATTTGGTGTTGAACAAAATCTTGTAAGTTGTAATTTGCTGCATCTGATTTTCCTGTTTCTATGGTGTTGCAAAATACTATATAATTATGATTTCCCCCATTTCATTTTACCCTTACTACTTGGATGATTTTTCTAACTTTTGCTGCCACTGGCCCATTGTGATATGTCACTGTGCTGTCATTTACATTGTAATAGTTTTTCTGGACTCACATATAAAGAGTGAATGAGCAGTGCTCCTCCTAACCTATGGTGCTTTAATGGTGACCTTTATGCTTAGCTTTTGATGTTATAAACTGTCAATGGTACAGTTACATATATTAATTTAGTATTCATTTTGCTTGTTGCAGGATCCAGGCAATCTTGGTACGTTAATCAGGTCTGCTTTGGCCTTCAAATGGGTAAGGAAAAATTCCACAGATTATTAATATCCTCAATTCTCTAACCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCAATGCAGTGCTTTTTGGCTTTCTGTTTTAACTAAAATTCGCACGGGAGAAATTTCTCTGTCATGTGTTAGTGTTTTTTTTCTTTTAGCATTTTTCTTTGGAAAACACGTTTTGCAGATTTAGATCTCGTCAATAAGTTTAAAGAACCCTTCTTTGAACTCATGAATGCTTATAGCATAACTCTCTAGTTTGAAATTTTGATAGGCCTCCAATTGTAAAAGTGCATACATATAAGTATAAGATGGTGAGTGAAAAAACGCGACAGAATGTTTGTTATGTATGGGCCCTCAAAGATTTTTTTTTTTTTTTTTTTGAGGAAACAAAGTGAGAGAGCAAAGCTCAAACACCAGAAAATTATTAATAAAAGATGGAACTACAGAGGGCTGGAGGAGAGCCCAAAGAACATTTTGTAAGGCCCCCAATCATTCGTAGGTATATGAGAAAGGGTAGAAAAGTAAATACACCTAATATTACTGAGGAGGAATGATTGGAGAGAAAGATCGTGCAGAGCAGGGCCCACAGGGAAGAGTTTTATGAAAGGCTTTAAATAGTGATTGATATGGAGCGAGTAGCTAGGTTTTCTTTTTGTCATCTTTATGAGAGTAGGCTGCTGTAGCTGGCAGGGGTCTCCATTGATGTAAAAGGGGACGGGTATACTTCTTTTATGTTTTTCTTTCCTTGTTATCTTTATCTCGTAGCTTGTGAACATTTGACATTTATATATAAATAAAGAACATCAGAGTACCGTCTCTATTTGCCATTGTTTGTGTGTTTTATTTGATATTTGGGGTTGGTAGCCTGACACATTAGTTGAGAAAAGCTTGGAAATTTAGAGCTATGGTGTGAGTCTTATAGTCTTTAAAGAGTTTGTGTCTATTACACCAAAGGCCTACGTAATTACAACAATCTTCCCAAAGGTTTAGGAGGCTTTTTTGTTTGCCTTTGAAGAATATTGTTAGTCAAGGGACTTACTGTTTGAGGCGTTTTATATACTGTTTTGTTGAGAGGGGTGAGAATCCTTTTGGCTATCATTTGCCTTTGGGTACACTTATGAGAATTGAGGAGACAGGGGAGCTCTTGACCCCACTACTTTTTTATTAAATGAATTAATGCTAAGGCCTATCAGTTTTGGTCTCAAAACAAGAAAAATGGAAGGAAGATTTGTAATGTTTGAAGAGAAAATGACAGATAGGTTTGAAGTGGTGAGTTGAAAATTGGTTCTCGATTCTCCGAAGCCGGGGAGAGGTAGATGGCTATAGAGCAGATGGATCTCCAATTTTTGCTCTGTTAGACCTCCAATTGTGTTGCAATACACAGTAGAAGAGAGAAGAAAGAAGAAAGTAGAAAGAAGAAAGAAATTGCATGTGTTATCGAGGGTGAGGGCACACCATGTGTAAGTGGGAGTGAGGTTATATGAGTGAGGATCATGATGGTGGTGGGACCATAGTCAGTTAGAGGAAAGAGGAAGTTAAATATGCCGAGTTTGGAAAGGAGTCGGGGTTTAGTTTTTTGGGCAATTTTTATGCACTCTTCCTTGAAAGAGAGGATAGGCAGAGAGGGTGTGTTTTTACTTTTGTGTTCTTAGTTTTTTGTATGTTTTAATTCAGAATTGTTGTTCACAATTCTACTTTGTAAACTTCGAAGTAATTTTCAATCAAATTAGAACACAACTACTAGGTGTTTTATCACGCTGTTATGGGAGGAGATGAAGGCAATCATGAATCAAATGGATGATTGGATGAACTTGGAGAGATGGAAAACTTCTTCAGAGAGTACTGATAATGGGAAGAAAGTGATGGAAAAAGAATCGATTGAGTCTGAATTATCATGAATTGTCCTAGTGGTAAAAAGGGAGATATAGTCTCTATAACTAACTAAGAGGTCATGGGTTCAATTCATGGTGGCTAACCTATGAGATTAGCCAAGGTGTGCATAAGCTGGCCTAGATATGTTGAGAATCAATTGTCGAAGAGAGACAAGTTGGATGCAGTTCTGTTGTGCTTGGAAGAGGAGGCATTGGATTGGTACAAGTTGGAGGGGATCTAAAGCTCGTGGATAGTTTGGATGAGTTTTGAAAGCTCCAAATTTGACTATGGTGATGGAGATAAGTATGCATGATTGATGAAGCTGCAACAAGAGTCCATTGTACTAGAGAATTGCTAGAGATTTTAGCAATGTTAGGCTTGTTTGGAAGACATTAATGATGGAGGCTTGGAGAGTAAGTTTGTGTAAAGACCCTAGATAGAAAAATAGTGGATTATTAGTAGAAATGAATATGATTATTAGTGGGGGCATAATAGTAAATAGTTAGTAAGTTAGGTTTTTCTGTTATAAATAGTAGGAGGGGTTGGAGAGAGGTGTGAAAATTTTTATAGTGGGATTTCCTTGAAATGGAACATGGGGAGAGTCTAGCCCTCTCAAAACGCTAGGTTACTTTGTTACTTGTTCTTGAGGTATTCTAAAATATATTTCATATATTTTGATATTTGGTTTGTTCTTTAACATTTCTTGAGTTCATTCTTTGTTCTTAAGATAATTCTTGTTAGGTGAGATCCTAACAGATTGGTATCAAAGGCATTCTTTCTTGGATATTCTTGTTTGGCAATTGGGGGTGAACCATGGACTTGGGTGCAAGCGCTTAATGGGCTGCCGATTGCAAATGTAAGGCGACTAAGAGAGGATAAACTCCATGGACATGGGAGTAGATGCAGAAATGGAGTGCAGATTGCAAGGTGGAAAGAATTGAAATAGAAGTACGGAAGAAGTCACAAGAAACAGAGGGAGAAGCTTGATGAATAACTATCAGAAATATAGAGGGATGTTAGATCATTGCAACAAAAGCTTATTGAATCACGGCAAAGAGATAAAGAAAGAGAGACAAAGAAACTTGTAGAAACCAAAGCTGGTAAAGAAGAATCATCAAAGTAAATATCAGGAAAATAGGAAACAATTGTAAATATGGCAGGGAGGGAAGGCAAATCCTATGAAAACGGTGAGATCGGTACAGAGATAAAATTGATTGAAACAAAACATAAGAAAAGAGATGAAGAGGGGCTCGACAGGAGAGGAGAAAAAGAGAAAGAATGCTTAATTGAAGATGAGGAAGTTGGATAATAAAAGAAACTCGATTATCCATGGATGTCGTCGATGACAAAGGGTAAAATGGTCAGTATGTAGCACTTGGGGGAAGTGGAAACGCTTGAAAAGGAGACAAACAATTCCGACAAAAAGAAAAAATGGGAAAAAGAAGAAACGGAGGAAAGAGCACCGATTGACAAGCTTATTGTTTGAAGAAAGGAAAGAGGGTGTGGAAGAAGAGACATGAGAAAAAAATTGGATGAGGCTATTGAGTATGAAATGGAAATAAAAACCAACAGTGGTTTAAAGACAAATGATGTTCTGGACATGAAGAAGTCGTTTGCACAGTGCATTGGAGGCGATAGTGCTTCGATCGAAGTTGGAAACCGAACAAGAAAGATGAACAATTTGAGGGGGGAAAAAAGGAAGGAGAACCCATTGATGAACTTACGATCAACAAAACGAAAAGGAGAGAAGATACATAATTGGATAGACCATTTGCGAGAAAAAAGGTGCAGAGTGATGATAACTTGTAGAAATACAAGTTATTATGACCTTTTAGGTAGAACAATGGAGCCAGAACATGGGATAAAGTGTCAAAACGCGTAGCTTTCATCACAAGTTTATAAAGATAAGAGAATATAACTTGCATAAGTCTCCATGCCTGTTTTACCATGCTTTTTAGTTTTTTATCACAGAATGATGAAGAAAAGAAGAAGCTTAGTGAATTGCAAGAGGAGCGCATGTTAAAGCTTTGCGATAGGAAGACTGCCTGGCGATTAACATCCCTAGGCGAAATGCCACATCATCACGCAATGAAGATTTACTAGAAGACAAGAATGATAGTTGGAGTTGATGTGACTTGACAAGATTGCAATTGGCGTTGACATGTGCAGAAGACTAGAAGGTTTCCACCTAAAGTAGTCTATATAAAGCCTCCCCTCCTACCAAGTAAACTAGTCTGGTCTGAATGGATCAAACCCTAGAGAGCTCCATGTGAGCCGGCGGAAAGAAATAGCCTTTCCCCTTTTGTAGAAGTTCTTCTCCTTCACCTCTTCTTCAGTCAGAAAGATTAGAGAGAGAAACCATCATCCTCTTCCCTCTAACTTGTAAAAGAGCATGCTCGACTCCCCC

mRNA sequence

GTAATTGAATCTCTAAAATCTATGCTGAGGTCACTTTGGCCCCTACATTTGAAGAGATTGCTATAGCACTAAACATTGAAACAAAAAGAAGCTGGGTGTATACTTAGGATTTGCAATGGTCTTTACAAAAAGAAGAAAAAAAATGAAAAAAATCCTGAAAAAAAAAACTGTGTTAGGCTGTGCCGGTGGAGTACGATAGAAGAATGCAATGCTCCTGCCTTTCCTGGTCCTCAAATCCGAAACTCGCCCCTTTCTTTCCTAAATCGAAGCTATCATCAATTAACATAGCAGAAGCCATCGATTTTACTGGAAGAATTCCTCTGCCTTCTCATGTTAAAGCCATCACCAGCATCTCCAACCCCTTCGTTAAGCACTGCGTCAAACTTCGTTTCAGTTCCTCTTATCGCCATTTCCATGGCTCCGTCGTTGTTGTTGGAGCTACTCCAATAAGGGAAATTTGCAAGTTTCAAGAGTCTCTGCATGGTGTAACTTGTACATTGGAGTGCTTACTTCTGCTAGATGAGGTTGAGGTTCCTGAAGGACTAGTTAATTTAACTGTTCGTATTGTGAGGGTGAGCTCAGCTGTGATGAAAAAACTTTCTGGCTTGCAATCAACAGAATCCATTGATGCAATTGCGCTCATGAGAATACCTCCCAGTTTTTGTAGTGTAGATGGCAATGAAAAAGAAGTAGATTTTAAAAGATGGTTTCCATCTCCACATCGAATATTAGTCCTTGAGGGAATCCAGGATCCAGGCAATCTTGGTACGTTAATCAGGTCTGCTTTGGCCTTCAAATGGAATGATGAAGAAAAGAAGAAGCTTAGTGAATTGCAAGAGGAGCGCATGTTAAAGCTTTGCGATAGGAAGACTGCCTGGCGATTAACATCCCTAGGCGAAATGCCACATCATCACGCAATGAAGATTTACTAGAAGACAAGAATGATAGTTGGAGTTGATGTGACTTGACAAGATTGCAATTGGCGTTGACATGTGCAGAAGACTAGAAGGTTTCCACCTAAAGTAGTCTATATAAAGCCTCCCCTCCTACCAAGTAAACTAGTCTGGTCTGAATGGATCAAACCCTAGAGAGCTCCATGTGAGCCGGCGGAAAGAAATAGCCTTTCCCCTTTTGTAGAAGTTCTTCTCCTTCACCTCTTCTTCAGTCAGAAAGATTAGAGAGAGAAACCATCATCCTCTTCCCTCTAACTTGTAAAAGAGCATGCTCGACTCCCCC

Coding sequence (CDS)

ATGCAATGCTCCTGCCTTTCCTGGTCCTCAAATCCGAAACTCGCCCCTTTCTTTCCTAAATCGAAGCTATCATCAATTAACATAGCAGAAGCCATCGATTTTACTGGAAGAATTCCTCTGCCTTCTCATGTTAAAGCCATCACCAGCATCTCCAACCCCTTCGTTAAGCACTGCGTCAAACTTCGTTTCAGTTCCTCTTATCGCCATTTCCATGGCTCCGTCGTTGTTGTTGGAGCTACTCCAATAAGGGAAATTTGCAAGTTTCAAGAGTCTCTGCATGGTGTAACTTGTACATTGGAGTGCTTACTTCTGCTAGATGAGGTTGAGGTTCCTGAAGGACTAGTTAATTTAACTGTTCGTATTGTGAGGGTGAGCTCAGCTGTGATGAAAAAACTTTCTGGCTTGCAATCAACAGAATCCATTGATGCAATTGCGCTCATGAGAATACCTCCCAGTTTTTGTAGTGTAGATGGCAATGAAAAAGAAGTAGATTTTAAAAGATGGTTTCCATCTCCACATCGAATATTAGTCCTTGAGGGAATCCAGGATCCAGGCAATCTTGGTACGTTAATCAGGTCTGCTTTGGCCTTCAAATGGAATGATGAAGAAAAGAAGAAGCTTAGTGAATTGCAAGAGGAGCGCATGTTAAAGCTTTGCGATAGGAAGACTGCCTGGCGATTAACATCCCTAGGCGAAATGCCACATCATCACGCAATGAAGATTTACTAG

Protein sequence

MQCSCLSWSSNPKLAPFFPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVKLRFSSSYRHFHGSVVVVGATPIREICKFQESLHGVTCTLECLLLLDEVEVPEGLVNLTVRIVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILVLEGIQDPGNLGTLIRSALAFKWNDEEKKKLSELQEERMLKLCDRKTAWRLTSLGEMPHHHAMKIY*

Homology

[Close]

BLAST of CSPI03G06910.1 vs. ExPASy TrEMBL
Match: A0A0A0L5K1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115080 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 7.2e-109
Identity = 202/213 (94.84%), Postives = 205/213 (96.24%), Query Frame = 0


Query: 1   MQCSCLSWSSNPKLAPFFPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK 60
           MQCSCLSWSSNPKLAP FPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK
Sbjct: 1   MQCSCLSWSSNPKLAPSFPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK 60

Query: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGVTCTLECLLLLDEVEVPEGLVNLTVR 120
           LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGVTCTLECLLLLDEVEVPEGLVNLTVR
Sbjct: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGVTCTLECLLLLDEVEVPEGLVNLTVR 120

Query: 121 IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILVLEG 180
           IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILVLEG
Sbjct: 121 IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILVLEG 180

Query: 181 IQDPGNLGTLIRSALAFKWNDEEKKKLSELQEE 214
           IQDPGNLGTLIRSALAFKWN   +  ++ L EE
Sbjct: 181 IQDPGNLGTLIRSALAFKWNTTTRCFITLLWEE 213

[Close]

BLAST of CSPI03G06910.1 vs. ExPASy TrEMBL
Match: A0A5D3DF85 (Putative tRNA/rRNA methyltransferase YsgA isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G001150 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 5.0e-102
Identity = 190/200 (95.00%), Postives = 192/200 (96.00%), Query Frame = 0


Query: 1   MQCSCLSWSSNPKLAPFFPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK 60
           MQCSCLSWSSNPKL P F KSKLSSIN AEAIDFTGRI LPSHVKAI+SISNPFVKHCVK
Sbjct: 1   MQCSCLSWSSNPKLGPSFHKSKLSSINQAEAIDFTGRISLPSHVKAISSISNPFVKHCVK 60

Query: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGVTCTLECLLLLDEVEVPEGLVNLTVR 120
           LRFSSSYRHFHGSVVVVGATPIREICKFQESLHG+TCTLE LLLLDEVEVPEGLVNLTVR
Sbjct: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGITCTLEYLLLLDEVEVPEGLVNLTVR 120

Query: 121 IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILVLEG 180
           IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEK VDFKRWFPSPHRILVLE 
Sbjct: 121 IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKVVDFKRWFPSPHRILVLER 180

Query: 181 IQDPGNLGTLIRSALAFKWN 201
           IQDPGNLGTLIRSALAFKWN
Sbjct: 181 IQDPGNLGTLIRSALAFKWN 200

[Close]

BLAST of CSPI03G06910.1 vs. ExPASy TrEMBL
Match: A0A1S3BNM2 (uncharacterized tRNA/rRNA methyltransferase YsgA isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491842 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 5.0e-102
Identity = 190/200 (95.00%), Postives = 192/200 (96.00%), Query Frame = 0


Query: 1   MQCSCLSWSSNPKLAPFFPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK 60
           MQCSCLSWSSNPKL P F KSKLSSIN AEAIDFTGRI LPSHVKAI+SISNPFVKHCVK
Sbjct: 1   MQCSCLSWSSNPKLGPSFHKSKLSSINQAEAIDFTGRISLPSHVKAISSISNPFVKHCVK 60

Query: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGVTCTLECLLLLDEVEVPEGLVNLTVR 120
           LRFSSSYRHFHGSVVVVGATPIREICKFQESLHG+TCTLE LLLLDEVEVPEGLVNLTVR
Sbjct: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGITCTLEYLLLLDEVEVPEGLVNLTVR 120

Query: 121 IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILVLEG 180
           IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEK VDFKRWFPSPHRILVLE 
Sbjct: 121 IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKVVDFKRWFPSPHRILVLER 180

Query: 181 IQDPGNLGTLIRSALAFKWN 201
           IQDPGNLGTLIRSALAFKWN
Sbjct: 181 IQDPGNLGTLIRSALAFKWN 200

[Close]

BLAST of CSPI03G06910.1 vs. ExPASy TrEMBL
Match: A0A1S4DXY9 (uncharacterized protein LOC103491842 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491842 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.5e-101
Identity = 189/199 (94.97%), Postives = 191/199 (95.98%), Query Frame = 0


Query: 1   MQCSCLSWSSNPKLAPFFPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK 60
           MQCSCLSWSSNPKL P F KSKLSSIN AEAIDFTGRI LPSHVKAI+SISNPFVKHCVK
Sbjct: 1   MQCSCLSWSSNPKLGPSFHKSKLSSINQAEAIDFTGRISLPSHVKAISSISNPFVKHCVK 60

Query: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGVTCTLECLLLLDEVEVPEGLVNLTVR 120
           LRFSSSYRHFHGSVVVVGATPIREICKFQESLHG+TCTLE LLLLDEVEVPEGLVNLTVR
Sbjct: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGITCTLEYLLLLDEVEVPEGLVNLTVR 120

Query: 121 IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILVLEG 180
           IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEK VDFKRWFPSPHRILVLE 
Sbjct: 121 IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKVVDFKRWFPSPHRILVLER 180

Query: 181 IQDPGNLGTLIRSALAFKW 200
           IQDPGNLGTLIRSALAFKW
Sbjct: 181 IQDPGNLGTLIRSALAFKW 199

[Close]

BLAST of CSPI03G06910.1 vs. ExPASy TrEMBL
Match: A0A6J1FNI0 (uncharacterized protein LOC111447061 OS=Cucurbita moschata OX=3662 GN=LOC111447061 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 7.3e-85
Identity = 161/200 (80.50%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1   MQCSCLSWSSNPKLAPFFPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK 60
           MQCSC+S  SN KL P   K KLSSI   EAID   RI LPSHVKAITS SNPFVKHCVK
Sbjct: 1   MQCSCISLPSNLKLGPSISKFKLSSIPKVEAIDLAARISLPSHVKAITSTSNPFVKHCVK 60

Query: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGVTCTLECLLLLDEVEVPEGLVNLTVR 120
           LRF+SSYRHFHGSV+VVGATPIREICKFQESL G++CTLECLLLLDEVE+PE LV+++VR
Sbjct: 61  LRFTSSYRHFHGSVLVVGATPIREICKFQESLRGISCTLECLLLLDEVEIPEELVDVSVR 120

Query: 121 IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILVLEG 180
           +VRVS  VMKKLSG+QSTESIDAIALMRIP SF S+DGN K+   KRWFPSPHRILVLEG
Sbjct: 121 VVRVSPTVMKKLSGMQSTESIDAIALMRIPDSFYSLDGNLKQAHCKRWFPSPHRILVLEG 180

Query: 181 IQDPGNLGTLIRSALAFKWN 201
           IQDPGNLGTLIRSALAFKWN
Sbjct: 181 IQDPGNLGTLIRSALAFKWN 200

[Close]

BLAST of CSPI03G06910.1 vs. NCBI nr
Match: XP_011650605.1 (uncharacterized protein LOC101218901 isoform X2 [Cucumis sativus] >KAE8650203.1 hypothetical protein Csa_010011 [Cucumis sativus])

HSP 1 Score: 403.3 bits (1035), Expect = 1.5e-108
Identity = 199/200 (99.50%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 1   MQCSCLSWSSNPKLAPFFPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK 60
           MQCSCLSWSSNPKLAP FPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK
Sbjct: 1   MQCSCLSWSSNPKLAPSFPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK 60

Query: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGVTCTLECLLLLDEVEVPEGLVNLTVR 120
           LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGVTCTLECLLLLDEVEVPEGLVNLTVR
Sbjct: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGVTCTLECLLLLDEVEVPEGLVNLTVR 120

Query: 121 IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILVLEG 180
           IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILVLEG
Sbjct: 121 IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILVLEG 180

Query: 181 IQDPGNLGTLIRSALAFKWN 201
           IQDPGNLGTLIRSALAFKWN
Sbjct: 181 IQDPGNLGTLIRSALAFKWN 200

[Close]

BLAST of CSPI03G06910.1 vs. NCBI nr
Match: XP_031739071.1 (uncharacterized protein LOC101218901 isoform X1 [Cucumis sativus])

HSP 1 Score: 397.9 bits (1021), Expect = 6.3e-107
Identity = 199/203 (98.03%), Postives = 199/203 (98.03%), Query Frame = 0


Query: 1   MQCSCLSWSSNPKLAPFFPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK 60
           MQCSCLSWSSNPKLAP FPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK
Sbjct: 1   MQCSCLSWSSNPKLAPSFPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK 60

Query: 61  LRFSSSYRHFHGSVVVVGATPI---REICKFQESLHGVTCTLECLLLLDEVEVPEGLVNL 120
           LRFSSSYRHFHGSVVVVGATPI   REICKFQESLHGVTCTLECLLLLDEVEVPEGLVNL
Sbjct: 61  LRFSSSYRHFHGSVVVVGATPISLYREICKFQESLHGVTCTLECLLLLDEVEVPEGLVNL 120

Query: 121 TVRIVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILV 180
           TVRIVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILV
Sbjct: 121 TVRIVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILV 180

Query: 181 LEGIQDPGNLGTLIRSALAFKWN 201
           LEGIQDPGNLGTLIRSALAFKWN
Sbjct: 181 LEGIQDPGNLGTLIRSALAFKWN 203

[Close]

BLAST of CSPI03G06910.1 vs. NCBI nr
Match: XP_008450171.1 (PREDICTED: uncharacterized tRNA/rRNA methyltransferase YsgA isoform X1 [Cucumis melo] >KAA0060378.1 putative tRNA/rRNA methyltransferase YsgA isoform X1 [Cucumis melo var. makuwa] >TYK22118.1 putative tRNA/rRNA methyltransferase YsgA isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 380.6 bits (976), Expect = 1.0e-101
Identity = 190/200 (95.00%), Postives = 192/200 (96.00%), Query Frame = 0


Query: 1   MQCSCLSWSSNPKLAPFFPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK 60
           MQCSCLSWSSNPKL P F KSKLSSIN AEAIDFTGRI LPSHVKAI+SISNPFVKHCVK
Sbjct: 1   MQCSCLSWSSNPKLGPSFHKSKLSSINQAEAIDFTGRISLPSHVKAISSISNPFVKHCVK 60

Query: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGVTCTLECLLLLDEVEVPEGLVNLTVR 120
           LRFSSSYRHFHGSVVVVGATPIREICKFQESLHG+TCTLE LLLLDEVEVPEGLVNLTVR
Sbjct: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGITCTLEYLLLLDEVEVPEGLVNLTVR 120

Query: 121 IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILVLEG 180
           IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEK VDFKRWFPSPHRILVLE 
Sbjct: 121 IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKVVDFKRWFPSPHRILVLER 180

Query: 181 IQDPGNLGTLIRSALAFKWN 201
           IQDPGNLGTLIRSALAFKWN
Sbjct: 181 IQDPGNLGTLIRSALAFKWN 200

[Close]

BLAST of CSPI03G06910.1 vs. NCBI nr
Match: XP_016900854.1 (PREDICTED: uncharacterized protein LOC103491842 isoform X2 [Cucumis melo])

HSP 1 Score: 378.3 bits (970), Expect = 5.2e-101
Identity = 189/199 (94.97%), Postives = 191/199 (95.98%), Query Frame = 0


Query: 1   MQCSCLSWSSNPKLAPFFPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK 60
           MQCSCLSWSSNPKL P F KSKLSSIN AEAIDFTGRI LPSHVKAI+SISNPFVKHCVK
Sbjct: 1   MQCSCLSWSSNPKLGPSFHKSKLSSINQAEAIDFTGRISLPSHVKAISSISNPFVKHCVK 60

Query: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGVTCTLECLLLLDEVEVPEGLVNLTVR 120
           LRFSSSYRHFHGSVVVVGATPIREICKFQESLHG+TCTLE LLLLDEVEVPEGLVNLTVR
Sbjct: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGITCTLEYLLLLDEVEVPEGLVNLTVR 120

Query: 121 IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILVLEG 180
           IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEK VDFKRWFPSPHRILVLE 
Sbjct: 121 IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKVVDFKRWFPSPHRILVLER 180

Query: 181 IQDPGNLGTLIRSALAFKW 200
           IQDPGNLGTLIRSALAFKW
Sbjct: 181 IQDPGNLGTLIRSALAFKW 199

[Close]

BLAST of CSPI03G06910.1 vs. NCBI nr
Match: XP_038904874.1 (uncharacterized tRNA/rRNA methyltransferase slr1673 [Benincasa hispida])

HSP 1 Score: 350.9 bits (899), Expect = 8.8e-93
Identity = 171/200 (85.50%), Postives = 184/200 (92.00%), Query Frame = 0


Query: 1   MQCSCLSWSSNPKLAPFFPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK 60
           MQCSC+SWSSN KL P F KSKLSSIN AE IDF  R+ LPSHVKAITS SNPFVKHCVK
Sbjct: 1   MQCSCVSWSSNLKLGPSFSKSKLSSINQAETIDFAARVSLPSHVKAITSTSNPFVKHCVK 60

Query: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGVTCTLECLLLLDEVEVPEGLVNLTVR 120
           LRFSSSYRH+HG+V+VVGATPIREICKFQESLHG+TCTLECLLLLD+VEVPEGLV+ +VR
Sbjct: 61  LRFSSSYRHYHGTVLVVGATPIREICKFQESLHGITCTLECLLLLDDVEVPEGLVDKSVR 120

Query: 121 IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILVLEG 180
           IVRVS  VM+KLSG+QSTESIDAIALMRIP SFCSVDGNEK++DFKR FPSPHRILVLE 
Sbjct: 121 IVRVSPTVMRKLSGMQSTESIDAIALMRIPASFCSVDGNEKDIDFKRCFPSPHRILVLER 180

Query: 181 IQDPGNLGTLIRSALAFKWN 201
           IQDPGNLGTLIRSALAFKWN
Sbjct: 181 IQDPGNLGTLIRSALAFKWN 200

[Close]

BLAST of CSPI03G06910.1 vs. TAIR 10
Match: AT4G38020.1 (tRNA/rRNA methyltransferase (SpoU) family protein )

HSP 1 Score: 224.9 bits (572), Expect = 6.8e-59
Identity = 107/165 (64.85%), Postives = 134/165 (81.21%), Query Frame = 0


Query: 37  RIPLPSHVKAITSISNPFVKHCVKLRFSSSYRHFHGSVVVVGATPIREICKFQESLHGVT 96
           R+ LPSHV +ITS +NPFVKHC+KLR SSSYRH HGSV+VVG  PIRE+C FQ +  G+T
Sbjct: 59  RVSLPSHVNSITSTTNPFVKHCLKLRQSSSYRHAHGSVLVVGTIPIREVCMFQTNKQGMT 118

Query: 97  CTLECLLLLDEVEVPEGLVNLTVRIVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSV 156
             +ECLLL +E ++P+GL +L++RIVRVSS VMKKLSG+QSTES++AIALMRIP SF  +
Sbjct: 119 TEIECLLLHEEAKIPQGLESLSIRIVRVSSLVMKKLSGVQSTESVEAIALMRIPSSFTDL 178

Query: 157 -DGNEKEVDFKRWFPSPHRILVLEGIQDPGNLGTLIRSALAFKWN 201
            D  +   D  +WFPS HR+LVL+ IQDPGNLGTL+RSA+AF W+
Sbjct: 179 KDDKDIITDCNKWFPSAHRVLVLDSIQDPGNLGTLVRSAMAFNWD 223

The following BLAST results are available for this feature:

BLAST of CSPI03G06910.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G06910.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5K1	7.2e-109	94.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115080 PE=4 SV=1	[more]
A0A5D3DF85	5.0e-102	95.00	Putative tRNA/rRNA methyltransferase YsgA isoform X1 OS=Cucumis melo var. makuwa...	[more]
A0A1S3BNM2	5.0e-102	95.00	uncharacterized tRNA/rRNA methyltransferase YsgA isoform X1 OS=Cucumis melo OX=3...	[more]
A0A1S4DXY9	2.5e-101	94.97	uncharacterized protein LOC103491842 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1FNI0	7.3e-85	80.50	uncharacterized protein LOC111447061 OS=Cucurbita moschata OX=3662 GN=LOC1114470...	[more]

BLAST of CSPI03G06910.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650605.1	1.5e-108	99.50	uncharacterized protein LOC101218901 isoform X2 [Cucumis sativus] >KAE8650203.1 ...	[more]
XP_031739071.1	6.3e-107	98.03	uncharacterized protein LOC101218901 isoform X1 [Cucumis sativus]	[more]
XP_008450171.1	1.0e-101	95.00	PREDICTED: uncharacterized tRNA/rRNA methyltransferase YsgA isoform X1 [Cucumis ...	[more]
XP_016900854.1	5.2e-101	94.97	PREDICTED: uncharacterized protein LOC103491842 isoform X2 [Cucumis melo]	[more]
XP_038904874.1	8.8e-93	85.50	uncharacterized tRNA/rRNA methyltransferase slr1673 [Benincasa hispida]	[more]

BLAST of CSPI03G06910.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38020.1	6.8e-59	64.85	tRNA/rRNA methyltransferase (SpoU) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 46..150 e-value: 1.4E-10 score: 43.3
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 46..144
IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	GENE3D	3.40.1280.10		coord: 160..205 e-value: 3.0E-6 score: 28.6
None	No IPR available	PANTHER	PTHR43191:SF2	RRNA METHYLTRANSFERASE 3, MITOCHONDRIAL	coord: 42..200
None	No IPR available	PANTHER	PTHR43191	RRNA METHYLTRANSFERASE 3,	coord: 42..200
IPR029028	Alpha/beta knot methyltransferases	SUPERFAMILY	75217	alpha/beta knot	coord: 170..200

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G06910	CSPI03G06910	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G06910.1.utr3p1	CSPI03G06910.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G06910.1.cds4	CSPI03G06910.1.cds4	CDS
CSPI03G06910.1.cds3	CSPI03G06910.1.cds3	CDS
CSPI03G06910.1.cds2	CSPI03G06910.1.cds2	CDS
CSPI03G06910.1.cds1	CSPI03G06910.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G06910.1.utr5p1	CSPI03G06910.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G06910.1	CSPI03G06910.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016020	membrane
molecular_function	GO:0004491	methylmalonate-semialdehyde dehydrogenase (acylating) activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008173	RNA methyltransferase activity