CSPI03G06060.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI03G06060.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	60S ribosomal protein L21
Location	Chr3: 5195098 .. 5195673 (-)
Sequence length	315
RNA-Seq Expression	CSPI03G06060.1
Synteny	CSPI03G06060.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCATAAATTTTACCACGGTCGCACAAGTCGCGTATGGAATGTTACAAAGTGTGCCATCAGCATCGAGATTAACAAGCAGATTCAGGATTCTTTTTTAAGATATGTTCTAGTTTTTAGAATGTACATAAGGTGATTTAGGGTAATGGATTGTGTTTGATTTTCATAGAATCTTAATTAGTTTTTGGACTATGTTTTTCTTATTAAACTTTGTTAGTTTGATGGGTTTTGGAATCTGTTGAGAGAAAGTTCCATTATGATTTGCACTCTATTTTTCTTATTAAACTTGTGATGTTGAGAATGAATTTTGCAGGTCGGGAACAAAATTATTAAGAAGAGAATTCATGTTGGAGTCGAGCACGTGTAGCCTTCTCGATGAACTGAGGAATTTAGCTTGAGGAAGGTGAAGAATGACGTGCCGAAGGACGAAGCCAAGGCCAAAGGTGAAATCATCTGCACCAAGAGGCAACCAGAAGGCCCTAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACTATGACTCTTATTCCATTACATGATGTTGTCAATGATTTCAAGGGTGGCTATTAG

mRNA sequence

ATGCCTCATAAATTTTACCACGGTCGCACAAGTCGCGTATGGAATGTTACAAAGTGTGCCATCAGCATCGAGATTAACAAGCAGATTCAGGATTCTTTTTTAAGATATGTTCTAGTTTTTAGAATGTACATAAGCTTGAGGAAGGTGAAGAATGACGTGCCGAAGGACGAAGCCAAGGCCAAAGGTGAAATCATCTGCACCAAGAGGCAACCAGAAGGCCCTAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACTATGACTCTTATTCCATTACATGATGTTGTCAATGATTTCAAGGGTGGCTATTAG

Coding sequence (CDS)

ATGCCTCATAAATTTTACCACGGTCGCACAAGTCGCGTATGGAATGTTACAAAGTGTGCCATCAGCATCGAGATTAACAAGCAGATTCAGGATTCTTTTTTAAGATATGTTCTAGTTTTTAGAATGTACATAAGCTTGAGGAAGGTGAAGAATGACGTGCCGAAGGACGAAGCCAAGGCCAAAGGTGAAATCATCTGCACCAAGAGGCAACCAGAAGGCCCTAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACTATGACTCTTATTCCATTACATGATGTTGTCAATGATTTCAAGGGTGGCTATTAG

Protein sequence

MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRMYISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPLHDVVNDFKGGY*

Homology

[Close]

BLAST of CSPI03G06060.1 vs. ExPASy Swiss-Prot
Match: Q9FDZ9 (60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.1e-30
Identity = 66/114 (57.89%), Postives = 81/114 (71.05%), Query Frame = 0


Query: 1   MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVK 60
           MPHKFYHGRT R+WNVTK A+ +E+NKQI +  +R  +  R+             LRK +
Sbjct: 52  MPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111

Query: 61  NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPLHDVVNDFKGGY 105
           NDV K +AKA+GE I TKRQP+GPKPGFMVEG  +ET+T IP +DVVND KGGY
Sbjct: 112 NDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIP-YDVVNDLKGGY 164

[Close]

BLAST of CSPI03G06060.1 vs. ExPASy Swiss-Prot
Match: Q43291 (60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-29
Identity = 66/114 (57.89%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 1   MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVK 60
           MPHKFYHGRT R+WNVTK A+ +E+NKQI +  +R  +  R+             LRK K
Sbjct: 52  MPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111

Query: 61  NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPLHDVVNDFKGGY 105
           ND  K  AKA GE I TKRQP+GPKPGFMVEG  +ET+T IP +DVVND KGGY
Sbjct: 112 NDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIP-YDVVNDLKGGY 164

[Close]

BLAST of CSPI03G06060.1 vs. ExPASy Swiss-Prot
Match: Q6QN05 (60S ribosomal protein L21 OS=Chinchilla lanigera OX=34839 GN=RPL21 PE=2 SV=3)

HSP 1 Score: 65.1 bits (157), Expect = 5.5e-10
Identity = 41/103 (39.81%), Postives = 56/103 (54.37%), Query Frame = 0


Query: 1   MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM-YIS--------LRKVK- 60
           MPHK YHG+T RV+NVT+ A+ I +NKQ++   L   +  R+ +I         L++VK 
Sbjct: 52  MPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKE 111

Query: 61  NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPL 94
           ND  K EAK KG  +  KRQP  P+    V     E   L P+
Sbjct: 112 NDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPI 154

[Close]

BLAST of CSPI03G06060.1 vs. ExPASy Swiss-Prot
Match: P46778 (60S ribosomal protein L21 OS=Homo sapiens OX=9606 GN=RPL21 PE=1 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 5.5e-10
Identity = 41/103 (39.81%), Postives = 56/103 (54.37%), Query Frame = 0


Query: 1   MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM-YIS--------LRKVK- 60
           MPHK YHG+T RV+NVT+ A+ I +NKQ++   L   +  R+ +I         L++VK 
Sbjct: 52  MPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKE 111

Query: 61  NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPL 94
           ND  K EAK KG  +  KRQP  P+    V     E   L P+
Sbjct: 112 NDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPI 154

[Close]

BLAST of CSPI03G06060.1 vs. ExPASy Swiss-Prot
Match: P49666 (60S ribosomal protein L21 OS=Sus scrofa OX=9823 GN=RPL21 PE=1 SV=3)

HSP 1 Score: 65.1 bits (157), Expect = 5.5e-10
Identity = 41/103 (39.81%), Postives = 56/103 (54.37%), Query Frame = 0


Query: 1   MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM-YIS--------LRKVK- 60
           MPHK YHG+T RV+NVT+ A+ I +NKQ++   L   +  R+ +I         L++VK 
Sbjct: 52  MPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKE 111

Query: 61  NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPL 94
           ND  K EAK KG  +  KRQP  P+    V     E   L P+
Sbjct: 112 NDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPI 154

[Close]

BLAST of CSPI03G06060.1 vs. ExPASy TrEMBL
Match: A0A6J1IYF0 (60S ribosomal protein L21-1 OS=Cucurbita maxima OX=3661 GN=LOC111481773 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 76/114 (66.67%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 1   MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVK 60
           MPHKFYHGRT RVWNVTK AI +EINKQ+ +  +R  +  R+             LRKVK
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVK 111

Query: 61  NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPLHDVVNDFKGGY 105
           ND  K EAKAKGE+ICTKRQPEGPKPGFMVEGALMET+T IP +DVVND KGGY
Sbjct: 112 NDQLKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIP-YDVVNDLKGGY 164

[Close]

BLAST of CSPI03G06060.1 vs. ExPASy TrEMBL
Match: A0A6J1J6F8 (60S ribosomal protein L21-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481771 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 76/114 (66.67%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 1   MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVK 60
           MPHKFYHGRT RVWNVTK AI +EINKQ+ +  +R  +  R+             LRKVK
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFCLRKVK 111

Query: 61  NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPLHDVVNDFKGGY 105
           ND  K EAKAKGE+ICTKRQPEGPKPGFMVEGALMET+T IP +DVVND KGGY
Sbjct: 112 NDQLKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIP-YDVVNDLKGGY 164

[Close]

BLAST of CSPI03G06060.1 vs. ExPASy TrEMBL
Match: A0A6J1F7A4 (60S ribosomal protein L21-1-like OS=Cucurbita moschata OX=3662 GN=LOC111441507 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 76/114 (66.67%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 1   MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVK 60
           MPHKFYHGRT RVWNVTK AI +EINKQ+ +  +R  +  R+             LRKVK
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKVK 111

Query: 61  NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPLHDVVNDFKGGY 105
           ND  K EAKAKGE+ICTKRQPEGPKPGFMVEGALMET+T IP +DVVND KGGY
Sbjct: 112 NDQLKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIP-YDVVNDLKGGY 164

[Close]

BLAST of CSPI03G06060.1 vs. ExPASy TrEMBL
Match: A0A6J1F2B9 (60S ribosomal protein L21-1 OS=Cucurbita moschata OX=3662 GN=LOC111441506 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 76/114 (66.67%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 1   MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVK 60
           MPHKFYHGRT RVWNVTK AI +EINKQ+ +  +R  +  R+             LRKVK
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVK 111

Query: 61  NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPLHDVVNDFKGGY 105
           ND  K EAKAKGE+ICTKRQPEGPKPGFMVEGALMET+T IP +DVVND KGGY
Sbjct: 112 NDQLKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIP-YDVVNDLKGGY 164

[Close]

BLAST of CSPI03G06060.1 vs. ExPASy TrEMBL
Match: A0A6J1KU90 (60S ribosomal protein L21-2-like OS=Cucurbita maxima OX=3661 GN=LOC111498718 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.9e-32
Identity = 74/114 (64.91%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 1   MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVK 60
           MPHKFYHGRT RVWNVTK AI +EINKQ+ +  ++  +  R+             LRKVK
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVK 111

Query: 61  NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPLHDVVNDFKGGY 105
           ND  K +AKAKGE+ICTKRQPEGPKPGFMVEGALMET+T IP +DVVND KGGY
Sbjct: 112 NDQLKADAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIP-YDVVNDLKGGY 164

[Close]

BLAST of CSPI03G06060.1 vs. NCBI nr
Match: XP_022983129.1 (60S ribosomal protein L21-1-like [Cucurbita maxima])

HSP 1 Score: 149.1 bits (375), Expect = 2.2e-32
Identity = 76/114 (66.67%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 1   MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVK 60
           MPHKFYHGRT RVWNVTK AI +EINKQ+ +  +R  +  R+             LRKVK
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFCLRKVK 111

Query: 61  NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPLHDVVNDFKGGY 105
           ND  K EAKAKGE+ICTKRQPEGPKPGFMVEGALMET+T IP +DVVND KGGY
Sbjct: 112 NDQLKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIP-YDVVNDLKGGY 164

[Close]

BLAST of CSPI03G06060.1 vs. NCBI nr
Match: XP_022934302.1 (60S ribosomal protein L21-1 [Cucurbita moschata] >XP_022983132.1 60S ribosomal protein L21-1 [Cucurbita maxima] >XP_023527248.1 60S ribosomal protein L21-1 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023527250.1 60S ribosomal protein L21-1 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023527251.1 60S ribosomal protein L21-1 [Cucurbita pepo subsp. pepo] >KAG6580787.1 60S ribosomal protein L21-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.1 bits (375), Expect = 2.2e-32
Identity = 76/114 (66.67%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 1   MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVK 60
           MPHKFYHGRT RVWNVTK AI +EINKQ+ +  +R  +  R+             LRKVK
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVK 111

Query: 61  NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPLHDVVNDFKGGY 105
           ND  K EAKAKGE+ICTKRQPEGPKPGFMVEGALMET+T IP +DVVND KGGY
Sbjct: 112 NDQLKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIP-YDVVNDLKGGY 164

[Close]

BLAST of CSPI03G06060.1 vs. NCBI nr
Match: KAG6580788.1 (60S ribosomal protein L21-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.1 bits (375), Expect = 2.2e-32
Identity = 76/114 (66.67%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 1   MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVK 60
           MPHKFYHGRT RVWNVTK AI +EINKQ+ +  +R  +  R+             LRKVK
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVK 111

Query: 61  NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPLHDVVNDFKGGY 105
           ND  K EAKAKGE+ICTKRQPEGPKPGFMVEGALMET+T IP +DVVND KGGY
Sbjct: 112 NDQLKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIP-YDVVNDLKGGY 164

[Close]

BLAST of CSPI03G06060.1 vs. NCBI nr
Match: XP_022934303.1 (60S ribosomal protein L21-1-like [Cucurbita moschata])

HSP 1 Score: 149.1 bits (375), Expect = 2.2e-32
Identity = 76/114 (66.67%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 1   MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVK 60
           MPHKFYHGRT RVWNVTK AI +EINKQ+ +  +R  +  R+             LRKVK
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKVK 111

Query: 61  NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPLHDVVNDFKGGY 105
           ND  K EAKAKGE+ICTKRQPEGPKPGFMVEGALMET+T IP +DVVND KGGY
Sbjct: 112 NDQLKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIP-YDVVNDLKGGY 164

[Close]

BLAST of CSPI03G06060.1 vs. NCBI nr
Match: XP_038906379.1 (60S ribosomal protein L21-1 [Benincasa hispida])

HSP 1 Score: 147.9 bits (372), Expect = 4.9e-32
Identity = 75/114 (65.79%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 1   MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVK 60
           MPHKFYHGRT RVWNVTK AI +EINKQ+ +  ++  +  R+             LRKVK
Sbjct: 52  MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVK 111

Query: 61  NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPLHDVVNDFKGGY 105
           ND  K EAKAKGE+ICTKRQPEGPKPGFMVEGALMET+T IP +DVVND KGGY
Sbjct: 112 NDELKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIP-YDVVNDLKGGY 164

[Close]

BLAST of CSPI03G06060.1 vs. TAIR 10
Match: AT1G57660.1 (Translation protein SH3-like family protein )

HSP 1 Score: 132.9 bits (333), Expect = 1.5e-31
Identity = 66/114 (57.89%), Postives = 81/114 (71.05%), Query Frame = 0


Query: 1   MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVK 60
           MPHKFYHGRT R+WNVTK A+ +E+NKQI +  +R  +  R+             LRK +
Sbjct: 52  MPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111

Query: 61  NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPLHDVVNDFKGGY 105
           NDV K +AKA+GE I TKRQP+GPKPGFMVEG  +ET+T IP +DVVND KGGY
Sbjct: 112 NDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIP-YDVVNDLKGGY 164

[Close]

BLAST of CSPI03G06060.1 vs. TAIR 10
Match: AT1G57860.1 (Translation protein SH3-like family protein )

HSP 1 Score: 132.9 bits (333), Expect = 1.5e-31
Identity = 66/114 (57.89%), Postives = 81/114 (71.05%), Query Frame = 0


Query: 1   MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVK 60
           MPHKFYHGRT R+WNVTK A+ +E+NKQI +  +R  +  R+             LRK +
Sbjct: 52  MPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111

Query: 61  NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPLHDVVNDFKGGY 105
           NDV K +AKA+GE I TKRQP+GPKPGFMVEG  +ET+T IP +DVVND KGGY
Sbjct: 112 NDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIP-YDVVNDLKGGY 164

[Close]

BLAST of CSPI03G06060.1 vs. TAIR 10
Match: AT1G09590.1 (Translation protein SH3-like family protein )

HSP 1 Score: 130.2 bits (326), Expect = 9.8e-31
Identity = 66/114 (57.89%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 1   MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVK 60
           MPHKFYHGRT R+WNVTK A+ +E+NKQI +  +R  +  R+             LRK K
Sbjct: 52  MPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111

Query: 61  NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPLHDVVNDFKGGY 105
           ND  K  AKA GE I TKRQP+GPKPGFMVEG  +ET+T IP +DVVND KGGY
Sbjct: 112 NDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIP-YDVVNDLKGGY 164

[Close]

BLAST of CSPI03G06060.1 vs. TAIR 10
Match: AT1G09690.1 (Translation protein SH3-like family protein )

HSP 1 Score: 130.2 bits (326), Expect = 9.8e-31
Identity = 66/114 (57.89%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 1   MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVK 60
           MPHKFYHGRT R+WNVTK A+ +E+NKQI +  +R  +  R+             LRK K
Sbjct: 52  MPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111

Query: 61  NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPLHDVVNDFKGGY 105
           ND  K  AKA GE I TKRQP+GPKPGFMVEG  +ET+T IP +DVVND KGGY
Sbjct: 112 NDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIP-YDVVNDLKGGY 164

The following BLAST results are available for this feature:

BLAST of CSPI03G06060.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FDZ9	2.1e-30	57.89	60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1	[more]
Q43291	1.4e-29	57.89	60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2	[more]
Q6QN05	5.5e-10	39.81	60S ribosomal protein L21 OS=Chinchilla lanigera OX=34839 GN=RPL21 PE=2 SV=3	[more]
P46778	5.5e-10	39.81	60S ribosomal protein L21 OS=Homo sapiens OX=9606 GN=RPL21 PE=1 SV=2	[more]
P49666	5.5e-10	39.81	60S ribosomal protein L21 OS=Sus scrofa OX=9823 GN=RPL21 PE=1 SV=3	[more]

BLAST of CSPI03G06060.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IYF0	1.1e-32	66.67	60S ribosomal protein L21-1 OS=Cucurbita maxima OX=3661 GN=LOC111481773 PE=3 SV=...	[more]
A0A6J1J6F8	1.1e-32	66.67	60S ribosomal protein L21-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481771 PE=...	[more]
A0A6J1F7A4	1.1e-32	66.67	60S ribosomal protein L21-1-like OS=Cucurbita moschata OX=3662 GN=LOC111441507 P...	[more]
A0A6J1F2B9	1.1e-32	66.67	60S ribosomal protein L21-1 OS=Cucurbita moschata OX=3662 GN=LOC111441506 PE=3 S...	[more]
A0A6J1KU90	6.9e-32	64.91	60S ribosomal protein L21-2-like OS=Cucurbita maxima OX=3661 GN=LOC111498718 PE=...	[more]

BLAST of CSPI03G06060.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983129.1	2.2e-32	66.67	60S ribosomal protein L21-1-like [Cucurbita maxima]	[more]
XP_022934302.1	2.2e-32	66.67	60S ribosomal protein L21-1 [Cucurbita moschata] >XP_022983132.1 60S ribosomal p...	[more]
KAG6580788.1	2.2e-32	66.67	60S ribosomal protein L21-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022934303.1	2.2e-32	66.67	60S ribosomal protein L21-1-like [Cucurbita moschata]	[more]
XP_038906379.1	4.9e-32	65.79	60S ribosomal protein L21-1 [Benincasa hispida]	[more]

BLAST of CSPI03G06060.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G57660.1	1.5e-31	57.89	Translation protein SH3-like family protein	[more]
AT1G57860.1	1.5e-31	57.89	Translation protein SH3-like family protein	[more]
AT1G09590.1	9.8e-31	57.89	Translation protein SH3-like family protein	[more]
AT1G09690.1	9.8e-31	57.89	Translation protein SH3-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036948	Ribosomal protein L21 superfamily	GENE3D	2.30.30.70	Ribosomal protein L21	coord: 1..42 e-value: 2.0E-9 score: 39.4
None	No IPR available	GENE3D	6.10.250.3260		coord: 43..95 e-value: 3.5E-14 score: 54.5
None	No IPR available	PANTHER	PTHR20981:SF31	60S RIBOSOMAL PROTEIN L21-1	coord: 1..104
IPR001147	Ribosomal protein L21e	PFAM	PF01157	Ribosomal_L21e	coord: 1..38 e-value: 3.0E-9 score: 36.6
IPR001147	Ribosomal protein L21e	PANTHER	PTHR20981	60S RIBOSOMAL PROTEIN L21	coord: 1..104
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 1..34

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G06060	CSPI03G06060	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G06060.1.cds2	CSPI03G06060.1.cds2	CDS
CSPI03G06060.1.cds1	CSPI03G06060.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G06060.1	CSPI03G06060.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome