CSPI03G05370.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI03G05370.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Polyubiquitin
Location	Chr3: 4385825 .. 4386286 (-)
Sequence length	462
RNA-Seq Expression	CSPI03G05370.1
Synteny	CSPI03G05370.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAATCTTTGTGAAAACTCTCCACAGAAAGACACTAACCCTTGAGGTTGAAAGTTCTGATACTATCGAAAATGTAAAGGCTAAGATTCAAGATATAGAGGGCATCCCACCATACCAACAGAGATTAATTTTAGCTGGTAGGCAATTGGAAGATAGTAAGACTATAGCCGACTATAACATTCAAACGGAATCAGATCTCCGCGTGTTGTTGCGTCTTCGTGGAGGAATGCAAATATTTGTGAAGACCTTGACAGGAATGACCATCACATTGGAGGTTGAGAGCTCAGACACCATTGATAACGTTAAGGCTAAAATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAAAGACTAATTTTCGCTGGAAAGCAATTGGAGGATGGACGTACATTGGCCGATTACAACATTCAAAAGGAGTCCACCCTCCACCTTGTCCTTCGTCTTCGTGGTGGTATTTGA

mRNA sequence

ATGCAAATCTTTGTGAAAACTCTCCACAGAAAGACACTAACCCTTGAGGTTGAAAGTTCTGATACTATCGAAAATGTAAAGGCTAAGATTCAAGATATAGAGGGCATCCCACCATACCAACAGAGATTAATTTTAGCTGGTAGGCAATTGGAAGATAGTAAGACTATAGCCGACTATAACATTCAAACGGAATCAGATCTCCGCGTGTTGTTGCGTCTTCGTGGAGGAATGCAAATATTTGTGAAGACCTTGACAGGAATGACCATCACATTGGAGGTTGAGAGCTCAGACACCATTGATAACGTTAAGGCTAAAATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAAAGACTAATTTTCGCTGGAAAGCAATTGGAGGATGGACGTACATTGGCCGATTACAACATTCAAAAGGAGTCCACCCTCCACCTTGTCCTTCGTCTTCGTGGTGGTATTTGA

Coding sequence (CDS)

ATGCAAATCTTTGTGAAAACTCTCCACAGAAAGACACTAACCCTTGAGGTTGAAAGTTCTGATACTATCGAAAATGTAAAGGCTAAGATTCAAGATATAGAGGGCATCCCACCATACCAACAGAGATTAATTTTAGCTGGTAGGCAATTGGAAGATAGTAAGACTATAGCCGACTATAACATTCAAACGGAATCAGATCTCCGCGTGTTGTTGCGTCTTCGTGGAGGAATGCAAATATTTGTGAAGACCTTGACAGGAATGACCATCACATTGGAGGTTGAGAGCTCAGACACCATTGATAACGTTAAGGCTAAAATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAAAGACTAATTTTCGCTGGAAAGCAATTGGAGGATGGACGTACATTGGCCGATTACAACATTCAAAAGGAGTCCACCCTCCACCTTGTCCTTCGTCTTCGTGGTGGTATTTGA

Protein sequence

MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYNIQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI*

Homology

[Close]

BLAST of CSPI03G05370.1 vs. ExPASy Swiss-Prot
Match: Q58G87 (Polyubiquitin 3 OS=Oryza sativa subsp. japonica OX=39947 GN=UBQ3 PE=2 SV=2)

HSP 1 Score: 262.3 bits (669), Expect = 3.4e-69
Identity = 135/153 (88.24%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60
           MQIFVKTL  KT+TLEVESSDTI+NVKAKIQD EGIPP QQRLI AG+QLED +T+ADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query: 61  IQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQ ES L ++LRLRGGMQIFVKTLTG TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 154
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGL 381

[Close]

BLAST of CSPI03G05370.1 vs. ExPASy Swiss-Prot
Match: P0CG85 (Polyubiquitin OS=Nicotiana sylvestris OX=4096 GN=UBI11 PE=2 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.5e-69
Identity = 135/153 (88.24%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60
           MQIFVKTL  KT+TLEVESSDTI+NVKAKIQD EGIPP QQRLI AG+QLED +T+ADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQ ES L ++LRLRGGMQIFVKTLTG TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 154
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153

[Close]

BLAST of CSPI03G05370.1 vs. ExPASy Swiss-Prot
Match: P0CH04 (Polyubiquitin OS=Petroselinum crispum OX=4043 GN=PCUBI4-1 PE=2 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.5e-69
Identity = 135/153 (88.24%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60
           MQIFVKTL  KT+TLEVESSDTI+NVKAKIQD EGIPP QQRLI AG+QLED +T+ADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQ ES L ++LRLRGGMQIFVKTLTG TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 154
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153

[Close]

BLAST of CSPI03G05370.1 vs. ExPASy Swiss-Prot
Match: P0CH05 (Polyubiquitin OS=Petroselinum crispum OX=4043 GN=PCUBI4-2 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.5e-69
Identity = 135/153 (88.24%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60
           MQIFVKTL  KT+TLEVESSDTI+NVKAKIQD EGIPP QQRLI AG+QLED +T+ADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQ ES L ++LRLRGGMQIFVKTLTG TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 154
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153

[Close]

BLAST of CSPI03G05370.1 vs. ExPASy Swiss-Prot
Match: P0CG84 (Polyubiquitin (Fragment) OS=Nicotiana sylvestris OX=4096 GN=UBI4 PE=2 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.5e-69
Identity = 135/153 (88.24%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60
           MQIFVKTL  KT+TLEVESSDTI+NVKAKIQD EGIPP QQRLI AG+QLED +T+ADYN
Sbjct: 73  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 132

Query: 61  IQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQ ES L ++LRLRGGMQIFVKTLTG TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 133 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 192

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 154
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 193 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 225

[Close]

BLAST of CSPI03G05370.1 vs. ExPASy TrEMBL
Match: Q40164 (Ubiquitin OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.5e-67
Identity = 136/153 (88.89%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60
           MQIFVKTL RKT+TLEVESSDTI+NVKAKIQD EGIPP QQRLI AG+QLED +T+ADYN
Sbjct: 229 MQIFVKTLTRKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query: 61  IQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQ ES L ++LRLRGGMQIFVKTLTG TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 154
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 381

[Close]

BLAST of CSPI03G05370.1 vs. ExPASy TrEMBL
Match: A0A5B0MFU9 (Uncharacterized protein OS=Puccinia graminis f. sp. tritici OX=56615 GN=PGT21_050247 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.4e-67
Identity = 136/153 (88.89%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60
           MQIFVKTL  KT+TLEVESSDTI+NVKAKIQD EGIPP QQRLI AG+QLED +T+ADYN
Sbjct: 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 516

Query: 61  IQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQ ES L ++LRLRGGMQIFVKTLTG TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 517 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 576

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 154
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
Sbjct: 577 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 609

[Close]

BLAST of CSPI03G05370.1 vs. ExPASy TrEMBL
Match: E3KQW1 (Polyubiquitin-A OS=Puccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL) OX=418459 GN=PGTG_13068 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.4e-67
Identity = 136/153 (88.89%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60
           MQIFVKTL  KT+TLEVESSDTI+NVKAKIQD EGIPP QQRLI AG+QLED +T+ADYN
Sbjct: 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 516

Query: 61  IQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQ ES L ++LRLRGGMQIFVKTLTG TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 517 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 576

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 154
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
Sbjct: 577 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 609

[Close]

BLAST of CSPI03G05370.1 vs. ExPASy TrEMBL
Match: A0A6P6WG59 (polyubiquitin-like OS=Coffea arabica OX=13443 GN=LOC113732679 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.4e-67
Identity = 136/153 (88.89%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60
           MQIFVKTL  KT+TLEVESSDTI+NVKAKIQD EGIPP QQRLI AG+QLED +T+ADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query: 61  IQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQ ES L ++LRLRGGMQIFVKTLTG TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 154
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
Sbjct: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 381

[Close]

BLAST of CSPI03G05370.1 vs. ExPASy TrEMBL
Match: A9PHG1 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G026600 PE=2 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.4e-67
Identity = 136/153 (88.89%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60
           MQIFVKTL  KT+TLEVESSDTI+NVKAKIQD EGIPP QQRLI AG+QLED +T+ADYN
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query: 61  IQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQ ES L ++LRLRGGMQIFVKTLTG TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 154
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
Sbjct: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 229

[Close]

BLAST of CSPI03G05370.1 vs. NCBI nr
Match: KAE8650142.1 (hypothetical protein Csa_011742 [Cucumis sativus])

HSP 1 Score: 289.3 bits (739), Expect = 2.0e-74
Identity = 149/153 (97.39%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60
           MQIFVKTLHRKTLTLEVE+SDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN
Sbjct: 1   MQIFVKTLHRKTLTLEVENSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60

Query: 61  IQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQTESDLRVLLRLRGGMQIFVKTLTG TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQTESDLRVLLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 154
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRG +
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGAL 153

[Close]

BLAST of CSPI03G05370.1 vs. NCBI nr
Match: CAA51679.1 (ubiquitin [Solanum lycopersicum])

HSP 1 Score: 264.6 bits (675), Expect = 5.3e-67
Identity = 136/153 (88.89%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60
           MQIFVKTL RKT+TLEVESSDTI+NVKAKIQD EGIPP QQRLI AG+QLED +T+ADYN
Sbjct: 229 MQIFVKTLTRKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query: 61  IQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQ ES L ++LRLRGGMQIFVKTLTG TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 154
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 381

[Close]

BLAST of CSPI03G05370.1 vs. NCBI nr
Match: KAG2330718.1 (hypothetical protein Bca52824_001898 [Brassica carinata])

HSP 1 Score: 263.5 bits (672), Expect = 1.2e-66
Identity = 135/153 (88.24%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60
           MQIFVKTL  KT+TLEVESSDTI+NVKAKIQD EGIPP QQRLI AG+QLED +T+ADYN
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query: 61  IQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQ ES+L ++LRLRGGMQIFVKTLTG TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESNLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 154
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGV 229

[Close]

BLAST of CSPI03G05370.1 vs. NCBI nr
Match: XP_021665833.1 (polyubiquitin [Hevea brasiliensis])

HSP 1 Score: 263.1 bits (671), Expect = 1.5e-66
Identity = 136/153 (88.89%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60
           MQIFVKTL  KT+TLEVESSDTIENVKAKIQD EGIPP QQRLI AG+QLED +T+ADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQ ES L ++LRLRGGMQIFVKTLTG TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 154
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153

[Close]

BLAST of CSPI03G05370.1 vs. NCBI nr
Match: AAD03343.1 (ubiquitin [Pisum sativum] >KAG8643663.1 hypothetical protein MANES_11G058600v8 [Manihot esculenta] >OIV92234.1 hypothetical protein TanjilG_31153 [Lupinus angustifolius])

HSP 1 Score: 263.1 bits (671), Expect = 1.5e-66
Identity = 136/153 (88.89%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60
           MQIFVKTL  KT+TLEVESSDTI+NVKAKIQD EGIPP QQRLI AG+QLED +T+ADYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364

Query: 61  IQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQ ES L ++LRLRGGMQIFVKTLTG TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 154
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
Sbjct: 425 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 457

[Close]

BLAST of CSPI03G05370.1 vs. TAIR 10
Match: AT4G05320.2 (polyubiquitin 10 )

HSP 1 Score: 261.9 bits (668), Expect = 3.2e-70
Identity = 135/153 (88.24%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60
           MQIFVKTL  KT+TLEVESSDTI+NVKAKIQD EGIPP QQRLI AG+QLED +T+ADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQ ES L ++LRLRGGMQIFVKTLTG TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 154
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153

[Close]

BLAST of CSPI03G05370.1 vs. TAIR 10
Match: AT4G02890.1 (Ubiquitin family protein )

HSP 1 Score: 261.9 bits (668), Expect = 3.2e-70
Identity = 135/153 (88.24%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60
           MQIFVKTL  KT+TLEVESSDTI+NVKAKIQD EGIPP QQRLI AG+QLED +T+ADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQ ES L ++LRLRGGMQIFVKTLTG TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 154
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153

[Close]

BLAST of CSPI03G05370.1 vs. TAIR 10
Match: AT4G05050.1 (ubiquitin 11 )

HSP 1 Score: 261.9 bits (668), Expect = 3.2e-70
Identity = 135/153 (88.24%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60
           MQIFVKTL  KT+TLEVESSDTI+NVKAKIQD EGIPP QQRLI AG+QLED +T+ADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQ ES L ++LRLRGGMQIFVKTLTG TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 154
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153

[Close]

BLAST of CSPI03G05370.1 vs. TAIR 10
Match: AT4G05320.3 (polyubiquitin 10 )

HSP 1 Score: 261.9 bits (668), Expect = 3.2e-70
Identity = 135/153 (88.24%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60
           MQIFVKTL  KT+TLEVESSDTI+NVKAKIQD EGIPP QQRLI AG+QLED +T+ADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQ ES L ++LRLRGGMQIFVKTLTG TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 154
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153

[Close]

BLAST of CSPI03G05370.1 vs. TAIR 10
Match: AT4G05320.4 (polyubiquitin 10 )

HSP 1 Score: 261.9 bits (668), Expect = 3.2e-70
Identity = 135/153 (88.24%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MQIFVKTLHRKTLTLEVESSDTIENVKAKIQDIEGIPPYQQRLILAGRQLEDSKTIADYN 60
           MQIFVKTL  KT+TLEVESSDTI+NVKAKIQD EGIPP QQRLI AG+QLED +T+ADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQTESDLRVLLRLRGGMQIFVKTLTGMTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQ ES L ++LRLRGGMQIFVKTLTG TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 154
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153

The following BLAST results are available for this feature:

BLAST of CSPI03G05370.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q58G87	3.4e-69	88.24	Polyubiquitin 3 OS=Oryza sativa subsp. japonica OX=39947 GN=UBQ3 PE=2 SV=2	[more]
P0CG85	4.5e-69	88.24	Polyubiquitin OS=Nicotiana sylvestris OX=4096 GN=UBI11 PE=2 SV=1	[more]
P0CH04	4.5e-69	88.24	Polyubiquitin OS=Petroselinum crispum OX=4043 GN=PCUBI4-1 PE=2 SV=1	[more]
P0CH05	4.5e-69	88.24	Polyubiquitin OS=Petroselinum crispum OX=4043 GN=PCUBI4-2 PE=3 SV=1	[more]
P0CG84	4.5e-69	88.24	Polyubiquitin (Fragment) OS=Nicotiana sylvestris OX=4096 GN=UBI4 PE=2 SV=1	[more]

BLAST of CSPI03G05370.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q40164	2.5e-67	88.89	Ubiquitin OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]
A0A5B0MFU9	7.4e-67	88.89	Uncharacterized protein OS=Puccinia graminis f. sp. tritici OX=56615 GN=PGT21_05...	[more]
E3KQW1	7.4e-67	88.89	Polyubiquitin-A OS=Puccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / ra...	[more]
A0A6P6WG59	7.4e-67	88.89	polyubiquitin-like OS=Coffea arabica OX=13443 GN=LOC113732679 PE=4 SV=1	[more]
A9PHG1	7.4e-67	88.89	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G026600 PE=2 ...	[more]

BLAST of CSPI03G05370.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650142.1	2.0e-74	97.39	hypothetical protein Csa_011742 [Cucumis sativus]	[more]
CAA51679.1	5.3e-67	88.89	ubiquitin [Solanum lycopersicum]	[more]
KAG2330718.1	1.2e-66	88.24	hypothetical protein Bca52824_001898 [Brassica carinata]	[more]
XP_021665833.1	1.5e-66	88.89	polyubiquitin [Hevea brasiliensis]	[more]
AAD03343.1	1.5e-66	88.89	ubiquitin [Pisum sativum] >KAG8643663.1 hypothetical protein MANES_11G058600v8 [...	[more]

BLAST of CSPI03G05370.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G05320.2	3.2e-70	88.24	polyubiquitin 10	[more]
AT4G02890.1	3.2e-70	88.24	Ubiquitin family protein	[more]
AT4G05050.1	3.2e-70	88.24	ubiquitin 11	[more]
AT4G05320.3	3.2e-70	88.24	polyubiquitin 10	[more]
AT4G05320.4	3.2e-70	88.24	polyubiquitin 10	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019956	Ubiquitin domain	PRINTS	PR00348	UBIQUITIN	coord: 87..107 score: 80.62 coord: 108..128 score: 95.05 coord: 129..150 score: 91.18
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 77..148 e-value: 1.1E-34 score: 131.3 coord: 1..72 e-value: 2.3E-25 score: 100.2
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 79..150 e-value: 5.9E-33 score: 112.5 coord: 3..74 e-value: 1.1E-25 score: 89.2
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 77..152 score: 30.016598
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..76 score: 26.249454
None	No IPR available	GENE3D	3.10.20.90		coord: 77..153 e-value: 4.6E-46 score: 157.0 coord: 1..76 e-value: 2.6E-36 score: 125.6
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 1..153
None	No IPR available	PANTHER	PTHR10666:SF364	SUBFAMILY NOT NAMED	coord: 1..153
None	No IPR available	CDD	cd01803	Ubl_ubiquitin	coord: 77..152 e-value: 5.04795E-50 score: 152.984
IPR019954	Ubiquitin conserved site	PROSITE	PS00299	UBIQUITIN_1	coord: 27..52
IPR019954	Ubiquitin conserved site	PROSITE	PS00299	UBIQUITIN_1	coord: 103..128
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..76
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 76..152

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G05370	CSPI03G05370	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G05370.1.cds1	CSPI03G05370.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G05370.1	CSPI03G05370.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019941	modification-dependent protein catabolic process
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0031386	protein tag
molecular_function	GO:0031625	ubiquitin protein ligase binding