|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAGGAAACTACAATGTCTTCAATTTCTTATGCTGAAGAAGTCGAGTCTGATCAGTCCGTCTATTTCAAGCCAAAATGCGCTGCTATTACTAAATCGGATGGGTTTGAGGTTGAGGACGAGAAGCTTTCGAGATTTATCGTCGAACTTGAAGCGCGTATTGCTCGGTTGGAGCGTAGTCGTTGGTTCAATCAGCAATATCAGGTTCAACAAGAGGAAGATGAAGAAGATGAATCTGAGGAACAATTCCCTGAAGAAAGCTCTGCCAGTTGTTGA mRNA sequence ATGGAGGAAACTACAATGTCTTCAATTTCTTATGCTGAAGAAGTCGAGTCTGATCAGTCCGTCTATTTCAAGCCAAAATGCGCTGCTATTACTAAATCGGATGGGTTTGAGGTTGAGGACGAGAAGCTTTCGAGATTTATCGTCGAACTTGAAGCGCGTATTGCTCGGTTGGAGCGTAGTCGTTGGTTCAATCAGCAATATCAGGTTCAACAAGAGGAAGATGAAGAAGATGAATCTGAGGAACAATTCCCTGAAGAAAGCTCTGCCAGTTGTTGA Coding sequence (CDS) ATGGAGGAAACTACAATGTCTTCAATTTCTTATGCTGAAGAAGTCGAGTCTGATCAGTCCGTCTATTTCAAGCCAAAATGCGCTGCTATTACTAAATCGGATGGGTTTGAGGTTGAGGACGAGAAGCTTTCGAGATTTATCGTCGAACTTGAAGCGCGTATTGCTCGGTTGGAGCGTAGTCGTTGGTTCAATCAGCAATATCAGGTTCAACAAGAGGAAGATGAAGAAGATGAATCTGAGGAACAATTCCCTGAAGAAAGCTCTGCCAGTTGTTGA Protein sequence MEETTMSSISYAEEVESDQSVYFKPKCAAITKSDGFEVEDEKLSRFIVELEARIARLERSRWFNQQYQVQQEEDEEDESEEQFPEESSASC*
Homology
BLAST of CSPI03G05240.1 vs. ExPASy TrEMBL
Match: A0A0A0L2F3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077740 PE=4 SV=1) HSP 1 Score: 165.6 bits (418), Expect = 9.6e-38 Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0
Query: 1 MEETTMSSISYAEEVESDQSVYFKPKCAAITKSDGFEVEDEKLSRFIVELEARIARLERS 60
MEETTMSSISYAEEVESDQSVYF+PKCAAITKSD FEVEDEKLSRFIVELEARIARLERS
Sbjct: 1 MEETTMSSISYAEEVESDQSVYFEPKCAAITKSDEFEVEDEKLSRFIVELEARIARLERS 60
Query: 61 RWFNQQYQVQQEEDEEDESEEQFPEESSASC 92
RWFNQQYQVQQEEDEEDESEEQFPEESSASC
Sbjct: 61 RWFNQQYQVQQEEDEEDESEEQFPEESSASC 91
BLAST of CSPI03G05240.1 vs. NCBI nr
Match: KAE8650137.1 (hypothetical protein Csa_011076, partial [Cucumis sativus]) HSP 1 Score: 160.6 bits (405), Expect = 6.4e-36 Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0
Query: 1 MEETTMSSISYAEEVESDQSVYFKPKCAAITKSDGFEVEDEKLSRFIVELEARIARLERS 60
MEETTMSSISYAEEVESDQSVYF+PKCAAITKSD FEVEDEKLSRFIVELEARIARLERS
Sbjct: 1 MEETTMSSISYAEEVESDQSVYFEPKCAAITKSDEFEVEDEKLSRFIVELEARIARLERS 60
Query: 61 RWFNQQYQVQQEEDEEDESEEQFPEESSA 90
RWFNQQYQVQQEEDEEDESEEQFPEESSA
Sbjct: 61 RWFNQQYQVQQEEDEEDESEEQFPEESSA 89
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L2F3 | 9.6e-38 | 97.80 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077740 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAE8650137.1 | 6.4e-36 | 97.75 | hypothetical protein Csa_011076, partial [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 67..91 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 70..84 |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CSPI03G05240.1.cds1 | CSPI03G05240.1.cds1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CSPI03G05240.1 | CSPI03G05240.1-protein | polypeptide |
|
