CSPI02G21240.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI02G21240.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Myocardial zonula adherens protein-like
Location	Chr2: 18641426 .. 18642631 (-)
Sequence length	387
RNA-Seq Expression	CSPI02G21240.1
Synteny	CSPI02G21240.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAGCTTTGGTTGAGTCCGCTTTATCTAAATTAATGGGAAAAGTTGACACCTCCATTGGTAAATTATTCTTGTTGAGTAACATCAAGGATGAATCATGTCGAAGATTGTTACATTTATCACAAAGGTAAAATTTTCAATTTATTTAATTATGTCTTTAGTCATATGTTTGAAATGATTTTCTAATTTTATTAAAATTGATTTACGTTTATAGTTTGAGTCCTCCAACTCTTAGTGCTCTAGCTTTGGCTGCTACAGTAAAAAGTCTTGAGAAAGATAATCAACAGCTTAAGAGGCTACTCCATACAACTAAAGGGGAGGTTAATTCCTGATTTATATATATACTATATGTATTGGATTCTATTAGGTCGATATAATGGTGAAGTAAAAGTGTAATTTGAGAAATTAGGGTATGTGTAAAATAGTAGTTCTAAACTTTTTTCAAATAAGATTGGTATAACTCTTGTTCCAAGATACTATCGGCTGATCATTGTTGATTAGGGCAATGAGCCACATCTTATGCCTAGTCATGAAAAGGGATGATAATTGGTTTTCTTTTTAATTTTAAACATAAAGCTCTATTAATGGATAATTAACTTATAAATCAGGTAGAAGAATTTAGAATTTAGTCTTACTGTTTTGATAAATCTTTTTAAATAATTTAATTTTGTTTTCCATATTGATTTACAATTTAACCGAAAAGATTTGAGTTTAAATTTAGTATTGGGATTTAAAATTCACTTCAACTATCAAGGAACTATATTTAATCACAATTTTTTTTAAAAAATGTAAATAATTAATTAAAAGATTTTTATTTAGTTAATTTCACCCTCTCTTCTTCACAATTATATTTATTTTTATCCAATTTTTGTGAAGGTTAAACTGCTATCCAATCAAATTGGTTATCTCATCGAGGAGCAAACGACGCCGTACCATAATATCAATGGAGGAGGAATTCCTAAACCACCAGCTGGCAGTTCCTCTGTGAAGGTTAAGAAAACTAAATGCACAATTATTAATTTCTACAACCAATATTTCATAATTGTTCTCTTTTCTTTTTGTATTATTATAATTTATATGTCAAGTTTTTGTTTAAATAACCATGAATTTATTTATATGTATGTGTGTGTGTGTGTGTGAATGGGGTTTGATCCTTTTGCATGCAGGTGCGTGAAAAGAAAAGACCATTGTTGGAGGATTGA

mRNA sequence

ATGGAAGAAGCTTTGGTTGAGTCCGCTTTATCTAAATTAATGGGAAAAGTTGACACCTCCATTGGTAAATTATTCTTGTTGAGTAACATCAAGGATGAATCATGTCGAAGATTGTTACATTTATCACAAAGTTTGAGTCCTCCAACTCTTAGTGCTCTAGCTTTGGCTGCTACAGTAAAAAGTCTTGAGAAAGATAATCAACAGCTTAAGAGGCTACTCCATACAACTAAAGGGGAGGTTAAACTGCTATCCAATCAAATTGGTTATCTCATCGAGGAGCAAACGACGCCGTACCATAATATCAATGGAGGAGGAATTCCTAAACCACCAGCTGGCAGTTCCTCTGTGAAGGTGCGTGAAAAGAAAAGACCATTGTTGGAGGATTGA

Coding sequence (CDS)

ATGGAAGAAGCTTTGGTTGAGTCCGCTTTATCTAAATTAATGGGAAAAGTTGACACCTCCATTGGTAAATTATTCTTGTTGAGTAACATCAAGGATGAATCATGTCGAAGATTGTTACATTTATCACAAAGTTTGAGTCCTCCAACTCTTAGTGCTCTAGCTTTGGCTGCTACAGTAAAAAGTCTTGAGAAAGATAATCAACAGCTTAAGAGGCTACTCCATACAACTAAAGGGGAGGTTAAACTGCTATCCAATCAAATTGGTTATCTCATCGAGGAGCAAACGACGCCGTACCATAATATCAATGGAGGAGGAATTCCTAAACCACCAGCTGGCAGTTCCTCTGTGAAGGTGCGTGAAAAGAAAAGACCATTGTTGGAGGATTGA

Protein sequence

MEEALVESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVKSLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQTTPYHNINGGGIPKPPAGSSSVKVREKKRPLLED*

Homology

[Close]

BLAST of CSPI02G21240.1 vs. ExPASy TrEMBL
Match: A0A0A0LNW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G369160 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.8e-61
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MEEALVESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK 60
           MEEAL+ESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK
Sbjct: 1   MEEALIESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK 60

Query: 61  SLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQTTPYHNINGGGIPKPPAGSSSVKVRE 120
           SLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQTTPYHNINGGGIPKPPAGSSSVKVRE
Sbjct: 61  SLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQTTPYHNINGGGIPKPPAGSSSVKVRE 120

Query: 121 KKRPLLED 129
           KKRPLLED
Sbjct: 121 KKRPLLED 128

[Close]

BLAST of CSPI02G21240.1 vs. ExPASy TrEMBL
Match: A0A5A7VI31 (Myocardial zonula adherens protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004640 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.9e-39
Identity = 94/129 (72.87%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 1   MEEALVESALSKLMGKVDTSIGKLFLLSNI-KDESCRRLLHLSQSLSPPTLSALALAATV 60
           MEE LVESALS+L+G+ D+S   LFLL NI KDESCRRLLHLS+SLSPPTL ALA+A T+
Sbjct: 1   MEEGLVESALSQLIGETDSSAPILFLLRNIKKDESCRRLLHLSRSLSPPTLRALAMADTI 60

Query: 61  KSLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQTTPYHNINGGGIPKPPAGSSSVKVR 120
           K+LEK+NQQL++LL TT+GEVKLLS+QIGYL+E + T   +INGGGI KPPA SSSVKV 
Sbjct: 61  KTLEKENQQLQKLLCTTQGEVKLLSDQIGYLMEGKKTSCDDINGGGIRKPPAASSSVKVN 120

Query: 121 EKKRPLLED 129
           EKKRPL ED
Sbjct: 121 EKKRPLSED 129

[Close]

BLAST of CSPI02G21240.1 vs. ExPASy TrEMBL
Match: A0A1S3BBC9 (uncharacterized protein LOC103488082 OS=Cucumis melo OX=3656 GN=LOC103488082 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.9e-39
Identity = 94/129 (72.87%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 1   MEEALVESALSKLMGKVDTSIGKLFLLSNI-KDESCRRLLHLSQSLSPPTLSALALAATV 60
           MEE LVESALS+L+G+ D+S   LFLL NI KDESCRRLLHLS+SLSPPTL ALA+A T+
Sbjct: 9   MEEGLVESALSQLIGETDSSAPILFLLRNIKKDESCRRLLHLSRSLSPPTLRALAMADTI 68

Query: 61  KSLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQTTPYHNINGGGIPKPPAGSSSVKVR 120
           K+LEK+NQQL++LL TT+GEVKLLS+QIGYL+E + T   +INGGGI KPPA SSSVKV 
Sbjct: 69  KTLEKENQQLQKLLCTTQGEVKLLSDQIGYLMEGKKTSCDDINGGGIRKPPAASSSVKVN 128

Query: 121 EKKRPLLED 129
           EKKRPL ED
Sbjct: 129 EKKRPLSED 137

[Close]

BLAST of CSPI02G21240.1 vs. ExPASy TrEMBL
Match: A0A6J1KKT5 (uncharacterized protein LOC111496613 OS=Cucurbita maxima OX=3661 GN=LOC111496613 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.4e-20
Identity = 66/127 (51.97%), Postives = 93/127 (73.23%), Query Frame = 0


Query: 1   MEEALVESALSKL-MGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATV 60
           MEE LVE+AL+ L +G   ++IG+ FL++N+ +ESCRRLLHLSQSL P +  AL+LAA +
Sbjct: 1   MEEVLVETALNDLVLGDTGSTIGQ-FLVANMNNESCRRLLHLSQSLRPSSHRALSLAAQI 60

Query: 61  KSLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIE--EQTTPYHNINGGGIPKPPAGSSSVK 120
           K+LE++N+QL+  L   +GEV LLS++IG L+E  E ++P  +       KPPA SSSVK
Sbjct: 61  KTLEENNRQLQIHLSVAQGEVMLLSDEIGRLLEDKEDSSPDPDF----ARKPPASSSSVK 120

Query: 121 VREKKRP 125
           +R+ KRP
Sbjct: 121 LRQNKRP 122

[Close]

BLAST of CSPI02G21240.1 vs. ExPASy TrEMBL
Match: A0A6J1GIQ2 (uncharacterized protein LOC111454550 OS=Cucurbita moschata OX=3662 GN=LOC111454550 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 8.2e-19
Identity = 64/126 (50.79%), Postives = 88/126 (69.84%), Query Frame = 0


Query: 1   MEEALVESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK 60
           MEE LVE+AL+ L+ +   S    FL++N+ ++SCRRLLHLSQSL P T  AL LAA +K
Sbjct: 83  MEEVLVETALNDLVLRDTGSTVGQFLVANMNNDSCRRLLHLSQSLRPSTQRALFLAAQIK 142

Query: 61  SLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIE--EQTTPYHNINGGGIPKPPAGSSSVKV 120
           +LE++N+QL+  L   +GEV LLS++IG L+E  E ++P  +       KPPA SSSVK+
Sbjct: 143 TLEENNRQLQIRLSVAQGEVILLSDEIGRLLEDKEDSSPDPDF----ARKPPASSSSVKL 202

Query: 121 REKKRP 125
           R+ KRP
Sbjct: 203 RQNKRP 204

[Close]

BLAST of CSPI02G21240.1 vs. NCBI nr
Match: KGN62714.1 (hypothetical protein Csa_022480 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 3.6e-61
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MEEALVESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK 60
           MEEAL+ESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK
Sbjct: 1   MEEALIESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK 60

Query: 61  SLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQTTPYHNINGGGIPKPPAGSSSVKVRE 120
           SLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQTTPYHNINGGGIPKPPAGSSSVKVRE
Sbjct: 61  SLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQTTPYHNINGGGIPKPPAGSSSVKVRE 120

Query: 121 KKRPLLED 129
           KKRPLLED
Sbjct: 121 KKRPLLED 128

[Close]

BLAST of CSPI02G21240.1 vs. NCBI nr
Match: KAA0065129.1 (myocardial zonula adherens protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 171.8 bits (434), Expect = 3.9e-39
Identity = 94/129 (72.87%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 1   MEEALVESALSKLMGKVDTSIGKLFLLSNI-KDESCRRLLHLSQSLSPPTLSALALAATV 60
           MEE LVESALS+L+G+ D+S   LFLL NI KDESCRRLLHLS+SLSPPTL ALA+A T+
Sbjct: 1   MEEGLVESALSQLIGETDSSAPILFLLRNIKKDESCRRLLHLSRSLSPPTLRALAMADTI 60

Query: 61  KSLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQTTPYHNINGGGIPKPPAGSSSVKVR 120
           K+LEK+NQQL++LL TT+GEVKLLS+QIGYL+E + T   +INGGGI KPPA SSSVKV 
Sbjct: 61  KTLEKENQQLQKLLCTTQGEVKLLSDQIGYLMEGKKTSCDDINGGGIRKPPAASSSVKVN 120

Query: 121 EKKRPLLED 129
           EKKRPL ED
Sbjct: 121 EKKRPLSED 129

[Close]

BLAST of CSPI02G21240.1 vs. NCBI nr
Match: XP_008444861.1 (PREDICTED: uncharacterized protein LOC103488082 [Cucumis melo])

HSP 1 Score: 171.8 bits (434), Expect = 3.9e-39
Identity = 94/129 (72.87%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 1   MEEALVESALSKLMGKVDTSIGKLFLLSNI-KDESCRRLLHLSQSLSPPTLSALALAATV 60
           MEE LVESALS+L+G+ D+S   LFLL NI KDESCRRLLHLS+SLSPPTL ALA+A T+
Sbjct: 9   MEEGLVESALSQLIGETDSSAPILFLLRNIKKDESCRRLLHLSRSLSPPTLRALAMADTI 68

Query: 61  KSLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQTTPYHNINGGGIPKPPAGSSSVKVR 120
           K+LEK+NQQL++LL TT+GEVKLLS+QIGYL+E + T   +INGGGI KPPA SSSVKV 
Sbjct: 69  KTLEKENQQLQKLLCTTQGEVKLLSDQIGYLMEGKKTSCDDINGGGIRKPPAASSSVKVN 128

Query: 121 EKKRPLLED 129
           EKKRPL ED
Sbjct: 129 EKKRPLSED 137

[Close]

BLAST of CSPI02G21240.1 vs. NCBI nr
Match: XP_038885825.1 (uncharacterized protein LOC120076121 [Benincasa hispida])

HSP 1 Score: 144.8 bits (364), Expect = 5.1e-31
Identity = 82/125 (65.60%), Postives = 101/125 (80.80%), Query Frame = 0


Query: 1   MEEALVESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK 60
           MEE LVESALS+L+G+ ++S  + FLL+NI+++SCRRLLHLS+SL P +   LALAA +K
Sbjct: 115 MEEILVESALSQLIGEAESSASE-FLLANIENDSCRRLLHLSRSLGPLSRRTLALAAKIK 174

Query: 61  SLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIEEQTTPYHNINGGGIPKPPAGSSSVKVRE 120
           SLEKDN+QL+ LL T +GE KLLS+QIGYL+EEQTT     NGGGI KPPAGSSS KV E
Sbjct: 175 SLEKDNEQLQLLLCTAQGEAKLLSDQIGYLLEEQTTS-DGGNGGGIGKPPAGSSSPKVHE 234

Query: 121 KKRPL 126
           +KR L
Sbjct: 235 RKRAL 237

[Close]

BLAST of CSPI02G21240.1 vs. NCBI nr
Match: XP_023002877.1 (uncharacterized protein LOC111496613 [Cucurbita maxima])

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-19
Identity = 66/127 (51.97%), Postives = 93/127 (73.23%), Query Frame = 0


Query: 1   MEEALVESALSKL-MGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATV 60
           MEE LVE+AL+ L +G   ++IG+ FL++N+ +ESCRRLLHLSQSL P +  AL+LAA +
Sbjct: 1   MEEVLVETALNDLVLGDTGSTIGQ-FLVANMNNESCRRLLHLSQSLRPSSHRALSLAAQI 60

Query: 61  KSLEKDNQQLKRLLHTTKGEVKLLSNQIGYLIE--EQTTPYHNINGGGIPKPPAGSSSVK 120
           K+LE++N+QL+  L   +GEV LLS++IG L+E  E ++P  +       KPPA SSSVK
Sbjct: 61  KTLEENNRQLQIHLSVAQGEVMLLSDEIGRLLEDKEDSSPDPDF----ARKPPASSSSVK 120

Query: 121 VREKKRP 125
           +R+ KRP
Sbjct: 121 LRQNKRP 122

[Close]

BLAST of CSPI02G21240.1 vs. TAIR 10
Match: AT4G09060.1 (unknown protein; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14680.1); Has 8168 Blast hits to 6036 proteins in 601 species: Archae - 151; Bacteria - 570; Metazoa - 4684; Fungi - 544; Plants - 345; Viruses - 91; Other Eukaryotes - 1783 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 4.9e-08
Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 1   MEEALVESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK 60
           +EE L++S L  L+ K +T +G+LFL +NI D+SC+ LL     L P T   L+L +  K
Sbjct: 179 LEEDLLDSVLGSLISKDETIMGRLFLEANIHDQSCQALLSKWDHLKPSTQKVLSLVSKAK 238

Query: 61  SLEKDNQQLKRLLHTTKGEVKLLS 85
             EK+ + +   L   + EV+L+S
Sbjct: 239 KFEKEKECIIMNLAKAEQEVELVS 262

[Close]

BLAST of CSPI02G21240.1 vs. TAIR 10
Match: AT4G09060.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14680.1). )

HSP 1 Score: 55.1 bits (131), Expect = 4.9e-08
Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 1   MEEALVESALSKLMGKVDTSIGKLFLLSNIKDESCRRLLHLSQSLSPPTLSALALAATVK 60
           +EE L++S L  L+ K +T +G+LFL +NI D+SC+ LL     L P T   L+L +  K
Sbjct: 205 LEEDLLDSVLGSLISKDETIMGRLFLEANIHDQSCQALLSKWDHLKPSTQKVLSLVSKAK 264

Query: 61  SLEKDNQQLKRLLHTTKGEVKLLS 85
             EK+ + +   L   + EV+L+S
Sbjct: 265 KFEKEKECIIMNLAKAEQEVELVS 288

The following BLAST results are available for this feature:

BLAST of CSPI02G21240.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G21240.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNW1	1.8e-61	99.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G369160 PE=4 SV=1	[more]
A0A5A7VI31	1.9e-39	72.87	Myocardial zonula adherens protein-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BBC9	1.9e-39	72.87	uncharacterized protein LOC103488082 OS=Cucumis melo OX=3656 GN=LOC103488082 PE=...	[more]
A0A6J1KKT5	7.4e-20	51.97	uncharacterized protein LOC111496613 OS=Cucurbita maxima OX=3661 GN=LOC111496613...	[more]
A0A6J1GIQ2	8.2e-19	50.79	uncharacterized protein LOC111454550 OS=Cucurbita moschata OX=3662 GN=LOC1114545...	[more]

BLAST of CSPI02G21240.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62714.1	3.6e-61	99.22	hypothetical protein Csa_022480 [Cucumis sativus]	[more]
KAA0065129.1	3.9e-39	72.87	myocardial zonula adherens protein-like [Cucumis melo var. makuwa]	[more]
XP_008444861.1	3.9e-39	72.87	PREDICTED: uncharacterized protein LOC103488082 [Cucumis melo]	[more]
XP_038885825.1	5.1e-31	65.60	uncharacterized protein LOC120076121 [Benincasa hispida]	[more]
XP_023002877.1	1.5e-19	51.97	uncharacterized protein LOC111496613 [Cucurbita maxima]	[more]

BLAST of CSPI02G21240.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09060.1	4.9e-08	38.10	unknown protein; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thal...	[more]
AT4G09060.2	4.9e-08	38.10	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 52..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..128
None	No IPR available	PANTHER	PTHR35689	EARLY ENDOSOME ANTIGEN	coord: 2..94

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI02G21240	CSPI02G21240	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G21240.1.cds4	CSPI02G21240.1.cds4	CDS
CSPI02G21240.1.cds3	CSPI02G21240.1.cds3	CDS
CSPI02G21240.1.cds2	CSPI02G21240.1.cds2	CDS
CSPI02G21240.1.cds1	CSPI02G21240.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI02G21240.1	CSPI02G21240.1-protein	polypeptide