CSPI02G06510.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI02G06510.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DUF4283 domain-containing protein
Location	Chr2: 5172199 .. 5172645 (+)
Sequence length	369
RNA-Seq Expression	CSPI02G06510.1
Synteny	CSPI02G06510.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCTAAGAACAGTGATGAAAGTGAAAAAGCTCAAAGAAAAGGAGACAGGAAAATACCTATAGAGTGGGAAAAAACAGTGAGCATAACAAGGCGCTATTTGCACGACGACTGGGAAGAGATATTGGACAAGCTAGCTAAACAGATTGAAGTCAAGTTCACATACCAACCTTTTCACGTTGAAAAAGCTATCATTCTTCTACAAGACAATGAATAAGCCTGTTTGCTATGTAGTAACAAAGATTGGACTATAGTTGGCAAATACTATGTGAAGTTTGAAACATGGAATATAAAGACATTCACACAAATCAGGAACTCATATGGAGGATTAGAAGATGTTTCAAAAGACAGATGGAAGAAACCCGACTTTATCGAAGAAAGACTCAAAGTTAAACAGAACTACGCAAAATTCATACCAGCCGAAATCAACATCACGGATGAAAAA

mRNA sequence

ATGAACTCTAAGAACAGTGATGAAAGTGAAAAAGCTCAAAGAAAAGGAGACAGGAAAATACCTATAGAGTGGGAAAAAACAGTGAGCATAACAAGGCGCTATTTGCACGACGACTGGGAAGAGATATTGGACAAGCTAGCTAAACAGATTGAAGTCAATAACAAAGATTGGACTATAGTTGGCAAATACTATGTGAAGTTTGAAACATGGAATATAAAGACATTCACACAAATCAGGAACTCATATGGAGGATTAGAAGATGTTTCAAAAGACAGATGGAAGAAACCCGACTTTATCGAAGAAAGACTCAAAGTTAAACAGAACTACGCAAAATTCATACCAGCCGAAATCAACATCACGGATGAAAAA

Coding sequence (CDS)

ATGAACTCTAAGAACAGTGATGAAAGTGAAAAAGCTCAAAGAAAAGGAGACAGGAAAATACCTATAGAGTGGGAAAAAACAGTGAGCATAACAAGGCGCTATTTGCACGACGACTGGGAAGAGATATTGGACAAGCTAGCTAAACAGATTGAAGTCAATAACAAAGATTGGACTATAGTTGGCAAATACTATGTGAAGTTTGAAACATGGAATATAAAGACATTCACACAAATCAGGAACTCATATGGAGGATTAGAAGATGTTTCAAAAGACAGATGGAAGAAACCCGACTTTATCGAAGAAAGACTCAAAGTTAAACAGAACTACGCAAAATTCATACCAGCCGAAATCAACATCACGGATGAAAAA

Protein sequence

MNSKNSDESEKAQRKGDRKIPIEWEKTVSITRRYLHDDWEEILDKLAKQIEVNNKDWTIVGKYYVKFETWNIKTFTQIRNSYGGLEDVSKDRWKKPDFIEERLKVKQNYAKFIPAEINITDEK

Homology

[Close]

BLAST of CSPI02G06510.1 vs. ExPASy TrEMBL
Match: A0A5A7V4L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00310 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 57/141 (40.43%), Postives = 73/141 (51.77%), Query Frame = 0


Query: 9   SEKAQRKGDRKIPIEWEKTVSITRRYLHDDWEEILDKLAKQIE----------------- 68
           ++K Q     ++ I+WEK V +TRRYLHDDW+ I DKLAK+IE                 
Sbjct: 22  NQKKQSFDTDELQIDWEKVVIVTRRYLHDDWDRIFDKLAKKIESDFTYQPFHVEKAIILL 81

Query: 69  ---------VNNKDWTIVGKYYVKFETWNIKTFTQIRNSYGGLEDVSKDRWKKPDFIEER 124
                     NNKDWT V K+Y             I ++  GL +VSK   +K D IE R
Sbjct: 82  QEKEQVKLLYNNKDWTTVHKFY-------------IGDACRGLLEVSKSTMRKADLIEAR 141

[Close]

BLAST of CSPI02G06510.1 vs. ExPASy TrEMBL
Match: A0A5D3DCX6 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00990 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.8e-15
Identity = 52/156 (33.33%), Postives = 74/156 (47.44%), Query Frame = 0


Query: 22  IEWEKTVSITRRYLHDDWEEILDKLAKQIEV--------------------------NNK 81
           IEWEKTV +TRRY HDDWE I++KL +Q++                            NK
Sbjct: 131 IEWEKTVVLTRRYFHDDWENIVEKLKEQLDTTVSYKPFHADKALIFFKDIEQANLICKNK 190

Query: 82  DWTIVGKYYVKFETWN----------------------------IKTFTQIRNSYGGLED 124
            WT VG +YVKFE WN                            +++F QI ++ GG  +
Sbjct: 191 GWTTVGHFYVKFEEWNQKAHASPKVVPSYGGWINVRGLTLHAWKLESFIQIGDACGGFIE 250

[Close]

BLAST of CSPI02G06510.1 vs. ExPASy TrEMBL
Match: A0A5A7U495 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00340 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.8e-15
Identity = 52/167 (31.14%), Postives = 80/167 (47.90%), Query Frame = 0


Query: 11  KAQRKGDRKIPIEWEKTVSITRRYLHDDWEEILDKLAKQIEV------------------ 70
           K   K +     EWE+TV +TRR+ HDDWE+I++KL +Q++                   
Sbjct: 224 KKTGKSNTNFSFEWERTVVLTRRFFHDDWEKIVEKLNEQLDTTVRYKPFHADKALICFKN 283

Query: 71  --------NNKDWTIVGKYYVKFE----------------------------TWNIKTFT 124
                    NK WT VG++YVKFE                             WN+++FT
Sbjct: 284 EEQANLICKNKGWTTVGRFYVKFEEWNQKAHASPKVIPSYGGWIKVRGVPLHAWNLESFT 343

[Close]

BLAST of CSPI02G06510.1 vs. ExPASy TrEMBL
Match: A0A5D3CFS8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00330 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.8e-15
Identity = 52/167 (31.14%), Postives = 80/167 (47.90%), Query Frame = 0


Query: 11  KAQRKGDRKIPIEWEKTVSITRRYLHDDWEEILDKLAKQIEV------------------ 70
           K   K +     EWE+TV +TRR+ HDDWE+I++KL +Q++                   
Sbjct: 276 KKTGKSNTNFSFEWERTVVLTRRFFHDDWEKIVEKLNEQLDTTVRYKPFHADKALICFKN 335

Query: 71  --------NNKDWTIVGKYYVKFE----------------------------TWNIKTFT 124
                    NK WT VG++YVKFE                             WN+++FT
Sbjct: 336 EEQANLICKNKGWTTVGRFYVKFEEWNQKAHASPKVIPSYGGWIKVRGVPLHAWNLESFT 395

[Close]

BLAST of CSPI02G06510.1 vs. ExPASy TrEMBL
Match: A0A5A7TUN4 (Mitotic spindle checkpoint protein mad1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00660 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 9.0e-15
Identity = 51/163 (31.29%), Postives = 76/163 (46.63%), Query Frame = 0


Query: 15  KGDRKIPIEWEKTVSITRRYLHDDWEEILDKLAKQIEVN--------------------- 74
           K +++   +W K V +TRRY H+DW +I+ KL +Q++ N                     
Sbjct: 155 KCEKEATFDWNKIVVLTRRYFHNDWRKIIVKLKEQLDTNLSYQPFHADKALIFIKDKSLV 214

Query: 75  -----NKDWTIVGKYYVKFE----------------------------TWNIKTFTQIRN 124
                N+ W+ VG   VKFE                             WN+ TFTQIRN
Sbjct: 215 RLLCKNRGWSTVGNVDVKFEEWNHAIHAMPRLMSSYGGWTKFRGIPLHAWNLNTFTQIRN 274

[Close]

BLAST of CSPI02G06510.1 vs. NCBI nr
Match: KAA0062230.1 (hypothetical protein E6C27_scaffold321G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-16
Identity = 57/141 (40.43%), Postives = 73/141 (51.77%), Query Frame = 0


Query: 9   SEKAQRKGDRKIPIEWEKTVSITRRYLHDDWEEILDKLAKQIE----------------- 68
           ++K Q     ++ I+WEK V +TRRYLHDDW+ I DKLAK+IE                 
Sbjct: 22  NQKKQSFDTDELQIDWEKVVIVTRRYLHDDWDRIFDKLAKKIESDFTYQPFHVEKAIILL 81

Query: 69  ---------VNNKDWTIVGKYYVKFETWNIKTFTQIRNSYGGLEDVSKDRWKKPDFIEER 124
                     NNKDWT V K+Y             I ++  GL +VSK   +K D IE R
Sbjct: 82  QEKEQVKLLYNNKDWTTVHKFY-------------IGDACRGLLEVSKSTMRKADLIEAR 141

[Close]

BLAST of CSPI02G06510.1 vs. NCBI nr
Match: KAA0050054.1 (hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 3.7e-15
Identity = 52/167 (31.14%), Postives = 80/167 (47.90%), Query Frame = 0


Query: 11  KAQRKGDRKIPIEWEKTVSITRRYLHDDWEEILDKLAKQIEV------------------ 70
           K   K +     EWE+TV +TRR+ HDDWE+I++KL +Q++                   
Sbjct: 224 KKTGKSNTNFSFEWERTVVLTRRFFHDDWEKIVEKLNEQLDTTVRYKPFHADKALICFKN 283

Query: 71  --------NNKDWTIVGKYYVKFE----------------------------TWNIKTFT 124
                    NK WT VG++YVKFE                             WN+++FT
Sbjct: 284 EEQANLICKNKGWTTVGRFYVKFEEWNQKAHASPKVIPSYGGWIKVRGVPLHAWNLESFT 343

[Close]

BLAST of CSPI02G06510.1 vs. NCBI nr
Match: KAA0051807.1 (hypothetical protein E6C27_scaffold60G002200 [Cucumis melo var. makuwa] >TYK21434.1 hypothetical protein E5676_scaffold609G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 3.7e-15
Identity = 52/156 (33.33%), Postives = 74/156 (47.44%), Query Frame = 0


Query: 22  IEWEKTVSITRRYLHDDWEEILDKLAKQIEV--------------------------NNK 81
           IEWEKTV +TRRY HDDWE I++KL +Q++                            NK
Sbjct: 131 IEWEKTVVLTRRYFHDDWENIVEKLKEQLDTTVSYKPFHADKALIFFKDIEQANLICKNK 190

Query: 82  DWTIVGKYYVKFETWN----------------------------IKTFTQIRNSYGGLED 124
            WT VG +YVKFE WN                            +++F QI ++ GG  +
Sbjct: 191 GWTTVGHFYVKFEEWNQKAHASPKVVPSYGGWINVRGLTLHAWKLESFIQIGDACGGFIE 250

[Close]

BLAST of CSPI02G06510.1 vs. NCBI nr
Match: TYK10355.1 (hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 3.7e-15
Identity = 52/167 (31.14%), Postives = 80/167 (47.90%), Query Frame = 0


Query: 11  KAQRKGDRKIPIEWEKTVSITRRYLHDDWEEILDKLAKQIEV------------------ 70
           K   K +     EWE+TV +TRR+ HDDWE+I++KL +Q++                   
Sbjct: 276 KKTGKSNTNFSFEWERTVVLTRRFFHDDWEKIVEKLNEQLDTTVRYKPFHADKALICFKN 335

Query: 71  --------NNKDWTIVGKYYVKFE----------------------------TWNIKTFT 124
                    NK WT VG++YVKFE                             WN+++FT
Sbjct: 336 EEQANLICKNKGWTTVGRFYVKFEEWNQKAHASPKVIPSYGGWIKVRGVPLHAWNLESFT 395

[Close]

BLAST of CSPI02G06510.1 vs. NCBI nr
Match: KAA0047273.1 (mitotic spindle checkpoint protein mad1 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-14
Identity = 51/163 (31.29%), Postives = 76/163 (46.63%), Query Frame = 0


Query: 15  KGDRKIPIEWEKTVSITRRYLHDDWEEILDKLAKQIEVN--------------------- 74
           K +++   +W K V +TRRY H+DW +I+ KL +Q++ N                     
Sbjct: 155 KCEKEATFDWNKIVVLTRRYFHNDWRKIIVKLKEQLDTNLSYQPFHADKALIFIKDKSLV 214

Query: 75  -----NKDWTIVGKYYVKFE----------------------------TWNIKTFTQIRN 124
                N+ W+ VG   VKFE                             WN+ TFTQIRN
Sbjct: 215 RLLCKNRGWSTVGNVDVKFEEWNHAIHAMPRLMSSYGGWTKFRGIPLHAWNLNTFTQIRN 274

The following BLAST results are available for this feature:

BLAST of CSPI02G06510.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G06510.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V4L2	1.3e-16	40.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DCX6	1.8e-15	33.33	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U495	1.8e-15	31.14	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CFS8	1.8e-15	31.14	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TUN4	9.0e-15	31.29	Mitotic spindle checkpoint protein mad1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of CSPI02G06510.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062230.1	2.6e-16	40.43	hypothetical protein E6C27_scaffold321G00310 [Cucumis melo var. makuwa]	[more]
KAA0050054.1	3.7e-15	31.14	hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa]	[more]
KAA0051807.1	3.7e-15	33.33	hypothetical protein E6C27_scaffold60G002200 [Cucumis melo var. makuwa] >TYK2143...	[more]
TYK10355.1	3.7e-15	31.14	hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa]	[more]
KAA0047273.1	1.9e-14	31.29	mitotic spindle checkpoint protein mad1 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI02G06510.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI02G06510	CSPI02G06510	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G06510.1.cds1	CSPI02G06510.1.cds1	CDS
CSPI02G06510.1.cds2	CSPI02G06510.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI02G06510.1	CSPI02G06510.1-protein	polypeptide