CSPI02G01800.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI02G01800.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	methyl-CpG-binding domain-containing protein 11-like
Location	Chr2: 1264644 .. 1265886 (+)
Sequence length	1243
RNA-Seq Expression	CSPI02G01800.1
Synteny	CSPI02G01800.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAAAGAACAAAAGAGAGATCTGAGTTGCTGGTTTATTGGTTGCAACTGATTGAACGATATGAATATTTGGCAGTTTTTTCCTAAGCAAGGTAACTCCCCTAGGAAACATGAGGTCATCTTCACAACCCCAACAGGGGAGGAGATCAACAACAAAAGAAAGTTGGATCAGTACCTGAAGGCACACCCCGGTGGCCCAGCAGCTGCTGAATTTGATTGGGGCACAGGTGAGACGCCGAGGAGGTCAGCAAGGATAAGTGAAAAGGCTAAAGTGTCTCCACCAATGGAGAGTGAGCACCCAAAGAGAAAGAGAACTTCGGTGTCCAAGAAAGATCTTAAAGAAACAGAAGCTGAACCAGAAGTAATGGAGGAGAAGAAAGAAGTTGACAACCCAGATGCTGGAAAAGATGAAAGCATGGCTGATGCTGGGGTGAAAGATGCCGATAAGAAGGAAAATCAAGATGAGAAGGAAACAAAAAATGAAGCTGCCGAAGCAGAGCCACCAAAGCCTGATGACCAGTTGAATGCGGGTAATGAGGCTGAAAAACAAGAACATAAGATAACTAATGAATCAAATCAAGAAAAATCGGAAGGAAACCTCAATGAGAAAGAACCTGAAAGCTCTAAATTAAATCTCAATGAGAATGTGGAAGGAGCAAAGCATGAAGAAATGATTGAGAAACCACAAGTTGAGAAGAATGATGGTAATTTCGCTGAGGCTGTAAAACCTGACACTCTTGTATCTGATAAACAAGAAAATGCTCTAGAGAATCAAAACCCAAATCAACAGGATATTGAACTAGAAGAAGAGATCAAGGACAAAGCAGGAGAAGCTGAAGAGAAGAGTGAGAAACATACTGAGACAAACAAGACAATAGAAGTCACGGAGAATGGAAACCACAGGAATGGTACTGGTGAGGTAAAGCCTTGAAGACGATTTTACATTTCTTGCTCTGGCTTTGGCCCTTCATTTGTCTTTCCGAATGTATCCGATTGCTGGGTAGCTCTGTAATTCGGATGTGGTTAATTGTAGTAATCTAATTATTGACAGAAACATCCATCCATACAATCAGTAGATTAGGCTTATTATGTTCCATCACTTGTTGTTCATTTGTACTGAATAAAAATTGTAGCACGTAATGACCTCTGTAACAATTAAGTGTAATATGTTTGTACTATTATATTGTAATGTAAACCTTTGTAAGGTAGAGATCTATCCATACTGATTTAGTTGGAATCCTTG

mRNA sequence

AGAAAAAGAACAAAAGAGAGATCTGAGTTGCTGGTTTATTGGTTGCAACTGATTGAACGATATGAATATTTGGCAGTTTTTTCCTAAGCAAGGTAACTCCCCTAGGAAACATGAGGTCATCTTCACAACCCCAACAGGGGAGGAGATCAACAACAAAAGAAAGTTGGATCAGTACCTGAAGGCACACCCCGGTGGCCCAGCAGCTGCTGAATTTGATTGGGGCACAGGTGAGACGCCGAGGAGGTCAGCAAGGATAAGTGAAAAGGCTAAAGTGTCTCCACCAATGGAGAGTGAGCACCCAAAGAGAAAGAGAACTTCGGTGTCCAAGAAAGATCTTAAAGAAACAGAAGCTGAACCAGAAGTAATGGAGGAGAAGAAAGAAGTTGACAACCCAGATGCTGGAAAAGATGAAAGCATGGCTGATGCTGGGGTGAAAGATGCCGATAAGAAGGAAAATCAAGATGAGAAGGAAACAAAAAATGAAGCTGCCGAAGCAGAGCCACCAAAGCCTGATGACCAGTTGAATGCGGGTAATGAGGCTGAAAAACAAGAACATAAGATAACTAATGAATCAAATCAAGAAAAATCGGAAGGAAACCTCAATGAGAAAGAACCTGAAAGCTCTAAATTAAATCTCAATGAGAATGTGGAAGGAGCAAAGCATGAAGAAATGATTGAGAAACCACAAGTTGAGAAGAATGATGGTAATTTCGCTGAGGCTGTAAAACCTGACACTCTTGTATCTGATAAACAAGAAAATGCTCTAGAGAATCAAAACCCAAATCAACAGGATATTGAACTAGAAGAAGAGATCAAGGACAAAGCAGGAGAAGCTGAAGAGAAGAGTGAGAAACATACTGAGACAAACAAGACAATAGAAGTCACGGAGAATGGAAACCACAGGAATGGTACTGGTGAGGTAAAGCCTTGAAGACGATTTTACATTTCTTGCTCTGGCTTTGGCCCTTCATTTGTCTTTCCGAATGTATCCGATTGCTGGGTAGCTCTGTAATTCGGATGTGGTTAATTGTAGTAATCTAATTATTGACAGAAACATCCATCCATACAATCAGTAGATTAGGCTTATTATGTTCCATCACTTGTTGTTCATTTGTACTGAATAAAAATTGTAGCACGTAATGACCTCTGTAACAATTAAGTGTAATATGTTTGTACTATTATATTGTAATGTAAACCTTTGTAAGGTAGAGATCTATCCATACTGATTTAGTTGGAATCCTTG

Coding sequence (CDS)

ATGAATATTTGGCAGTTTTTTCCTAAGCAAGGTAACTCCCCTAGGAAACATGAGGTCATCTTCACAACCCCAACAGGGGAGGAGATCAACAACAAAAGAAAGTTGGATCAGTACCTGAAGGCACACCCCGGTGGCCCAGCAGCTGCTGAATTTGATTGGGGCACAGGTGAGACGCCGAGGAGGTCAGCAAGGATAAGTGAAAAGGCTAAAGTGTCTCCACCAATGGAGAGTGAGCACCCAAAGAGAAAGAGAACTTCGGTGTCCAAGAAAGATCTTAAAGAAACAGAAGCTGAACCAGAAGTAATGGAGGAGAAGAAAGAAGTTGACAACCCAGATGCTGGAAAAGATGAAAGCATGGCTGATGCTGGGGTGAAAGATGCCGATAAGAAGGAAAATCAAGATGAGAAGGAAACAAAAAATGAAGCTGCCGAAGCAGAGCCACCAAAGCCTGATGACCAGTTGAATGCGGGTAATGAGGCTGAAAAACAAGAACATAAGATAACTAATGAATCAAATCAAGAAAAATCGGAAGGAAACCTCAATGAGAAAGAACCTGAAAGCTCTAAATTAAATCTCAATGAGAATGTGGAAGGAGCAAAGCATGAAGAAATGATTGAGAAACCACAAGTTGAGAAGAATGATGGTAATTTCGCTGAGGCTGTAAAACCTGACACTCTTGTATCTGATAAACAAGAAAATGCTCTAGAGAATCAAAACCCAAATCAACAGGATATTGAACTAGAAGAAGAGATCAAGGACAAAGCAGGAGAAGCTGAAGAGAAGAGTGAGAAACATACTGAGACAAACAAGACAATAGAAGTCACGGAGAATGGAAACCACAGGAATGGTACTGGTGAGGTAAAGCCTTGA

Protein sequence

MNIWQFFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKVSPPMESEHPKRKRTSVSKKDLKETEAEPEVMEEKKEVDNPDAGKDESMADAGVKDADKKENQDEKETKNEAAEAEPPKPDDQLNAGNEAEKQEHKITNESNQEKSEGNLNEKEPESSKLNLNENVEGAKHEEMIEKPQVEKNDGNFAEAVKPDTLVSDKQENALENQNPNQQDIELEEEIKDKAGEAEEKSEKHTETNKTIEVTENGNHRNGTGEVKP*

Homology

[Close]

BLAST of CSPI02G01800.1 vs. ExPASy Swiss-Prot
Match: Q9XI36 (Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=MBD10 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.2e-21
Identity = 98/285 (34.39%), Postives = 148/285 (51.93%), Query Frame = 0


Query: 6   FFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARI 65
           F+PK+  +PRK E++F  PTGEEI+++++L+QYLKAHPG P  +EF+W TGETPRRS+RI
Sbjct: 22  FYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKAHPGNPVISEFEWTTGETPRRSSRI 81

Query: 66  SEKAKVSPPMESEHP--KRKRTSVSKKDLKETEAEPEVMEEKKEVDNPDAGKDESMADAG 125
           S+K K + P   + P  K++R+S++KKD KE   + E    K+ +D    GK E+     
Sbjct: 82  SQKVKATTPTPDKEPLLKKRRSSLTKKDNKEAAEKNEEAAVKENMDVDKDGKTENA---- 141

Query: 126 VKDADKKENQDEKETKNEAAEAEPPKPDDQLNAGNEAEKQEHKITNESNQEKSEGNLNEK 185
                + E + EKE   E AEAE    + +     +  K+  K T    + ++E    EK
Sbjct: 142 -----EAEKEKEKEGVTEIAEAEKENNEGEKTEAEKVNKEGEK-TEAGKEGQTEIAEAEK 201

Query: 186 EPESSKLNLN----ENVEGAKHEEMIEKPQVEKNDGNFAEAVKPDTLVSDKQENALENQN 245
           E E  K        E V   K    ++  ++EK  G+   A +P      K E   + + 
Sbjct: 202 EKEGEKAEAENKEAEVVRDKKESMEVDTSELEKKAGSGEGAEEP-----SKVEGLKDTEM 261

Query: 246 PNQQDIELEEEIKDKAGEAEEKSEKHTETNKTIEVTENGNHRNGT 285
              Q++  E +++ K   AEEK+E     NK    TE    +N T
Sbjct: 262 KEAQEVVTEADVEKK--PAEEKTE-----NKGSVTTEANGEQNVT 284

[Close]

BLAST of CSPI02G01800.1 vs. ExPASy Swiss-Prot
Match: Q9LW00 (Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=MBD11 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.4e-17
Identity = 92/257 (35.80%), Postives = 133/257 (51.75%), Query Frame = 0


Query: 6   FFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARI 65
           F+P +  S +K EV+F  PTGEEI+N+++L+QYLK+HPG PA AEFDW T  TPRRSARI
Sbjct: 22  FYPNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHPGNPAIAEFDWTTSGTPRRSARI 81

Query: 66  SEKAKVSPPMESEHPK---RKRTSVSKKDLKETEAEPEVMEEKKEVDNPDAGKDESMADA 125
           SEK K +P  + E PK   R ++ VSKKD  E E      EE   V + +    E +A+ 
Sbjct: 82  SEKTKATPSPDKEPPKKRGRTKSPVSKKD-AEGEKSEGGGEENSHVKDTEMNPPEGIAEN 141

Query: 126 GVKDADKKENQDEKETKNEAAEAEPPKPDDQLNAGNEAEKQEHKITNESNQEKSEGNLNE 185
             ++   K    E E  N+A E    +        N A  QE     ES +EK+  ++++
Sbjct: 142 --ENVTDKNGSGETERVNDAKENIVAE-----ETPNAAPVQEE---GESMKEKALDSVDD 201

Query: 186 KEPESSKLNLNENVEGAKHEEMIEKPQVEKNDGNFAEAVKPDTLVSDKQENALENQNPNQ 245
           K  E+ K     ++E  K+   +EK  VE +D              +K+ +  E +N  +
Sbjct: 202 KSKETDKEKDTGSIE--KNSVDVEKKTVEASD--------------EKKNSEAETRNHEE 251

Query: 246 QDIELEEEIKDKAGEAE 260
             +  E E K+K  E E
Sbjct: 262 NGLTTEAEGKEKTAEGE 251

[Close]

BLAST of CSPI02G01800.1 vs. ExPASy TrEMBL
Match: A0A0A0LG01 (MBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G006830 PE=4 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 8.5e-149
Identity = 288/289 (99.65%), Postives = 288/289 (99.65%), Query Frame = 0


Query: 1   MNIWQFFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPR 60
           MNIWQFFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPR
Sbjct: 1   MNIWQFFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPR 60

Query: 61  RSARISEKAKVSPPMESEHPKRKRTSVSKKDLKETEAEPEVMEEKKEVDNPDAGKDESMA 120
           RSARISEKAKVSPPMESEHPKRKRTSVSKKDLKETEAEPEVMEEKKEVDNPDAGKDESMA
Sbjct: 61  RSARISEKAKVSPPMESEHPKRKRTSVSKKDLKETEAEPEVMEEKKEVDNPDAGKDESMA 120

Query: 121 DAGVKDADKKENQDEKETKNEAAEAEPPKPDDQLNAGNEAEKQEHKITNESNQEKSEGNL 180
           DA VKDADKKENQDEKETKNEAAEAEPPKPDDQLNAGNEAEKQEHKITNESNQEKSEGNL
Sbjct: 121 DAEVKDADKKENQDEKETKNEAAEAEPPKPDDQLNAGNEAEKQEHKITNESNQEKSEGNL 180

Query: 181 NEKEPESSKLNLNENVEGAKHEEMIEKPQVEKNDGNFAEAVKPDTLVSDKQENALENQNP 240
           NEKEPESSKLNLNENVEGAKHEEMIEKPQVEKNDGNFAEAVKPDTLVSDKQENALENQNP
Sbjct: 181 NEKEPESSKLNLNENVEGAKHEEMIEKPQVEKNDGNFAEAVKPDTLVSDKQENALENQNP 240

Query: 241 NQQDIELEEEIKDKAGEAEEKSEKHTETNKTIEVTENGNHRNGTGEVKP 290
           NQQDIELEEEIKDKAGEAEEKSEKHTETNKTIEVTENGNHRNGTGEVKP
Sbjct: 241 NQQDIELEEEIKDKAGEAEEKSEKHTETNKTIEVTENGNHRNGTGEVKP 289

[Close]

BLAST of CSPI02G01800.1 vs. ExPASy TrEMBL
Match: A0A5D3BH67 (Methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00350 PE=4 SV=1)

HSP 1 Score: 500.4 bits (1287), Expect = 5.2e-138
Identity = 271/285 (95.09%), Postives = 277/285 (97.19%), Query Frame = 0


Query: 5   QFFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSAR 64
           +FFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSAR
Sbjct: 28  KFFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSAR 87

Query: 65  ISEKAKVSPPMESEHPKRKRTSVSKKDLKETEAEPEVMEEKKEVDNPDAGKDESMADAGV 124
           ISEKAK SPPMESEHPKRKRTSVSKKDLKETEAEPEV+EEKKEVDNPDAGKDESMADA V
Sbjct: 88  ISEKAKASPPMESEHPKRKRTSVSKKDLKETEAEPEVLEEKKEVDNPDAGKDESMADAEV 147

Query: 125 KDADKKENQDEKETKNEAAEAEPPKPDDQLNAGNEAEKQEHKITNESNQEKSEGNLNEKE 184
           KDA+KKEN DEKETKNEAAEAEPPKPDDQLNA NEAEKQEHKITNESNQEK EGNLNEKE
Sbjct: 148 KDANKKENIDEKETKNEAAEAEPPKPDDQLNADNEAEKQEHKITNESNQEKLEGNLNEKE 207

Query: 185 PESSKLNLNENVEGAKHEEMIEKPQVEKNDGNFAEAVKPDTLVSDKQENALENQNPNQQD 244
           PESSKLNLNEN+EGAKHEE IE+PQVEKNDGNFAEAVKPDTLVSDKQENALENQNPNQQ+
Sbjct: 208 PESSKLNLNENLEGAKHEEKIEQPQVEKNDGNFAEAVKPDTLVSDKQENALENQNPNQQE 267

Query: 245 IELEEEIKDKAGEAEEKSEKHTETNKTIEVTENGNHRNGTGEVKP 290
           IELE EIKDKAG AEEKSEKHTETNKTIEVTENGNHRNGTGEVKP
Sbjct: 268 IELEGEIKDKAGAAEEKSEKHTETNKTIEVTENGNHRNGTGEVKP 312

[Close]

BLAST of CSPI02G01800.1 vs. ExPASy TrEMBL
Match: A0A1S3C687 (methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo OX=3656 GN=LOC103497143 PE=4 SV=1)

HSP 1 Score: 500.4 bits (1287), Expect = 5.2e-138
Identity = 271/285 (95.09%), Postives = 277/285 (97.19%), Query Frame = 0


Query: 5   QFFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSAR 64
           +FFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSAR
Sbjct: 28  KFFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSAR 87

Query: 65  ISEKAKVSPPMESEHPKRKRTSVSKKDLKETEAEPEVMEEKKEVDNPDAGKDESMADAGV 124
           ISEKAK SPPMESEHPKRKRTSVSKKDLKETEAEPEV+EEKKEVDNPDAGKDESMADA V
Sbjct: 88  ISEKAKASPPMESEHPKRKRTSVSKKDLKETEAEPEVLEEKKEVDNPDAGKDESMADAEV 147

Query: 125 KDADKKENQDEKETKNEAAEAEPPKPDDQLNAGNEAEKQEHKITNESNQEKSEGNLNEKE 184
           KDA+KKEN DEKETKNEAAEAEPPKPDDQLNA NEAEKQEHKITNESNQEK EGNLNEKE
Sbjct: 148 KDANKKENIDEKETKNEAAEAEPPKPDDQLNADNEAEKQEHKITNESNQEKLEGNLNEKE 207

Query: 185 PESSKLNLNENVEGAKHEEMIEKPQVEKNDGNFAEAVKPDTLVSDKQENALENQNPNQQD 244
           PESSKLNLNEN+EGAKHEE IE+PQVEKNDGNFAEAVKPDTLVSDKQENALENQNPNQQ+
Sbjct: 208 PESSKLNLNENLEGAKHEEKIEQPQVEKNDGNFAEAVKPDTLVSDKQENALENQNPNQQE 267

Query: 245 IELEEEIKDKAGEAEEKSEKHTETNKTIEVTENGNHRNGTGEVKP 290
           IELE EIKDKAG AEEKSEKHTETNKTIEVTENGNHRNGTGEVKP
Sbjct: 268 IELEGEIKDKAGAAEEKSEKHTETNKTIEVTENGNHRNGTGEVKP 312

[Close]

BLAST of CSPI02G01800.1 vs. ExPASy TrEMBL
Match: A0A6J1G2N9 (methyl-CpG-binding domain-containing protein 11-like OS=Cucurbita moschata OX=3662 GN=LOC111450270 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 7.3e-108
Identity = 232/319 (72.73%), Postives = 253/319 (79.31%), Query Frame = 0


Query: 5   QFFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSAR 64
           +FFPKQGNSP+K+EVIF TPTGEE +NKRKLDQYLK+HPGGPA+AEFDWGTGETPRRSAR
Sbjct: 28  KFFPKQGNSPKKYEVIFITPTGEEFSNKRKLDQYLKSHPGGPASAEFDWGTGETPRRSAR 87

Query: 65  ISEKAKVSPPMESEHPKRKRTSVSKKDLKETEAEP-EVMEEKKEVDNPDAGKDESMA--- 124
           ISEKAKV  PMESEHPKRKRTSVSKK LKE E EP EV EEKKEVDN DAGKDE++A   
Sbjct: 88  ISEKAKVISPMESEHPKRKRTSVSKKGLKEIETEPAEVREEKKEVDNQDAGKDETIADAE 147

Query: 125 -----------------------------DAGVKDADKKENQDEKETKNEAAEAEPPKPD 184
                                        DA +KDADKKENQDEKETK+EAAEAEPPKPD
Sbjct: 148 VKDDDKNETKDEAAEADPPKPDDQLNADNDADIKDADKKENQDEKETKDEAAEAEPPKPD 207

Query: 185 DQLNAGNEAEKQEHKITNESNQEKSEGNLNEKEPESSKLNLNENVEGAKHEEMIEKPQV- 244
           DQLNA N+AEKQEHKIT+ES QEK E NLNEKEPESSKLNLNEN+EGAKH+E IE+PQV 
Sbjct: 208 DQLNADNDAEKQEHKITSESEQEKLERNLNEKEPESSKLNLNENLEGAKHDEKIEQPQVE 267

Query: 245 EKNDGNFAEAVKPDTLVSDKQENALENQNPNQQDIELEEEIKDKAGEAEEKSEKHTETNK 290
           EKND    E VKPDTL+SD+QE   ENQ P +QDIELE EIKDKA   EEK+EKHTETNK
Sbjct: 268 EKNDSTLGETVKPDTLLSDRQEKEQENQKPCEQDIELEGEIKDKAAATEEKNEKHTETNK 327

[Close]

BLAST of CSPI02G01800.1 vs. ExPASy TrEMBL
Match: A0A6J1KA38 (methyl-CpG-binding domain-containing protein 11-like OS=Cucurbita maxima OX=3661 GN=LOC111493630 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.8e-106
Identity = 230/319 (72.10%), Postives = 252/319 (79.00%), Query Frame = 0


Query: 5   QFFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSAR 64
           +FFPKQGNSP+K+EVIF TPTGEE +NKRKLDQYLK+HPG PA+AEFDWGTGETPRRSAR
Sbjct: 28  KFFPKQGNSPKKYEVIFITPTGEEFSNKRKLDQYLKSHPGCPASAEFDWGTGETPRRSAR 87

Query: 65  ISEKAKVSPPMESEHPKRKRTSVSKKDLKETEAEP-EVMEEKKEVDNPDAGKDESMA--- 124
           ISEKAKV  PMESEHPKRKRTSVSKK LKE E EP EV+EEKKEVDN DAGK ES+A   
Sbjct: 88  ISEKAKVISPMESEHPKRKRTSVSKKGLKEIETEPAEVLEEKKEVDNQDAGKHESIADAE 147

Query: 125 -----------------------------DAGVKDADKKENQDEKETKNEAAEAEPPKPD 184
                                        DA +KDADKKENQD+KETK+EAAEAEPPKPD
Sbjct: 148 VKDDDKNKTEDEAAEADPPKPDDQLNADNDADIKDADKKENQDKKETKDEAAEAEPPKPD 207

Query: 185 DQLNAGNEAEKQEHKITNESNQEKSEGNLNEKEPESSKLNLNENVEGAKHEEMIEKPQV- 244
           DQLNA N+AEKQEHKIT+ES QEK E NLNEKEPESSKLNLNEN+EGAKH+E IE+PQV 
Sbjct: 208 DQLNADNDAEKQEHKITSESEQEKLERNLNEKEPESSKLNLNENLEGAKHDEKIEQPQVE 267

Query: 245 EKNDGNFAEAVKPDTLVSDKQENALENQNPNQQDIELEEEIKDKAGEAEEKSEKHTETNK 290
           EKND N  E VKPDTL+SD+QE   ENQ P +QDIELE EI DKA   EEK+EKHTETNK
Sbjct: 268 EKNDSNLGETVKPDTLLSDRQEKEQENQKPYEQDIELEGEINDKAAATEEKNEKHTETNK 327

[Close]

BLAST of CSPI02G01800.1 vs. NCBI nr
Match: XP_004139304.1 (methyl-CpG-binding domain-containing protein 11 [Cucumis sativus] >KAE8651531.1 hypothetical protein Csa_019489 [Cucumis sativus])

HSP 1 Score: 524.6 bits (1350), Expect = 5.3e-145
Identity = 283/285 (99.30%), Postives = 284/285 (99.65%), Query Frame = 0


Query: 5   QFFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSAR 64
           +FFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSAR
Sbjct: 28  KFFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSAR 87

Query: 65  ISEKAKVSPPMESEHPKRKRTSVSKKDLKETEAEPEVMEEKKEVDNPDAGKDESMADAGV 124
           ISEKAKVSPPMESEHPKRKRTSVSKKDLKETEAEPEVMEEKKEVDNPDAGKDESMADA V
Sbjct: 88  ISEKAKVSPPMESEHPKRKRTSVSKKDLKETEAEPEVMEEKKEVDNPDAGKDESMADAEV 147

Query: 125 KDADKKENQDEKETKNEAAEAEPPKPDDQLNAGNEAEKQEHKITNESNQEKSEGNLNEKE 184
           KDADKKENQDEKETKNEAAEAEPPKPDDQLNAGNEAEKQEHKITNESNQEKSEGNLNEKE
Sbjct: 148 KDADKKENQDEKETKNEAAEAEPPKPDDQLNAGNEAEKQEHKITNESNQEKSEGNLNEKE 207

Query: 185 PESSKLNLNENVEGAKHEEMIEKPQVEKNDGNFAEAVKPDTLVSDKQENALENQNPNQQD 244
           PESSKLNLNENVEGAKHEEMIEKPQVEKNDGNFAEAVKPDTLVSDKQENALENQNPNQQD
Sbjct: 208 PESSKLNLNENVEGAKHEEMIEKPQVEKNDGNFAEAVKPDTLVSDKQENALENQNPNQQD 267

Query: 245 IELEEEIKDKAGEAEEKSEKHTETNKTIEVTENGNHRNGTGEVKP 290
           IELEEEIKDKAGEAEEKSEKHTETNKTIEVTENGNHRNGTGEVKP
Sbjct: 268 IELEEEIKDKAGEAEEKSEKHTETNKTIEVTENGNHRNGTGEVKP 312

[Close]

BLAST of CSPI02G01800.1 vs. NCBI nr
Match: XP_008457463.1 (PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis melo] >KAA0063499.1 methyl-CpG-binding domain-containing protein 11-like [Cucumis melo var. makuwa] >TYJ97825.1 methyl-CpG-binding domain-containing protein 11-like [Cucumis melo var. makuwa])

HSP 1 Score: 500.4 bits (1287), Expect = 1.1e-137
Identity = 271/285 (95.09%), Postives = 277/285 (97.19%), Query Frame = 0


Query: 5   QFFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSAR 64
           +FFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSAR
Sbjct: 28  KFFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSAR 87

Query: 65  ISEKAKVSPPMESEHPKRKRTSVSKKDLKETEAEPEVMEEKKEVDNPDAGKDESMADAGV 124
           ISEKAK SPPMESEHPKRKRTSVSKKDLKETEAEPEV+EEKKEVDNPDAGKDESMADA V
Sbjct: 88  ISEKAKASPPMESEHPKRKRTSVSKKDLKETEAEPEVLEEKKEVDNPDAGKDESMADAEV 147

Query: 125 KDADKKENQDEKETKNEAAEAEPPKPDDQLNAGNEAEKQEHKITNESNQEKSEGNLNEKE 184
           KDA+KKEN DEKETKNEAAEAEPPKPDDQLNA NEAEKQEHKITNESNQEK EGNLNEKE
Sbjct: 148 KDANKKENIDEKETKNEAAEAEPPKPDDQLNADNEAEKQEHKITNESNQEKLEGNLNEKE 207

Query: 185 PESSKLNLNENVEGAKHEEMIEKPQVEKNDGNFAEAVKPDTLVSDKQENALENQNPNQQD 244
           PESSKLNLNEN+EGAKHEE IE+PQVEKNDGNFAEAVKPDTLVSDKQENALENQNPNQQ+
Sbjct: 208 PESSKLNLNENLEGAKHEEKIEQPQVEKNDGNFAEAVKPDTLVSDKQENALENQNPNQQE 267

Query: 245 IELEEEIKDKAGEAEEKSEKHTETNKTIEVTENGNHRNGTGEVKP 290
           IELE EIKDKAG AEEKSEKHTETNKTIEVTENGNHRNGTGEVKP
Sbjct: 268 IELEGEIKDKAGAAEEKSEKHTETNKTIEVTENGNHRNGTGEVKP 312

[Close]

BLAST of CSPI02G01800.1 vs. NCBI nr
Match: XP_038889539.1 (methyl-CpG-binding domain-containing protein 11-like [Benincasa hispida])

HSP 1 Score: 447.6 bits (1150), Expect = 8.3e-122
Identity = 250/285 (87.72%), Postives = 260/285 (91.23%), Query Frame = 0


Query: 5   QFFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSAR 64
           +FFPKQGNSP+KHEVIFTTPTGEEI NKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSAR
Sbjct: 28  KFFPKQGNSPKKHEVIFTTPTGEEIKNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSAR 87

Query: 65  ISEKAKVSPPMESEHPKRKRTSVSKKDLKETEAEPEVMEEKKEVDNPDAGKDESMADAGV 124
           ISEKAK SPPMESEHPKRKRTSVSKKDLKETEAEPEV+EEKKE DN DAGKD S  D  V
Sbjct: 88  ISEKAKASPPMESEHPKRKRTSVSKKDLKETEAEPEVLEEKKEFDNQDAGKDGSRDDTEV 147

Query: 125 KDADKKENQDEKETKNEAAEAEPPKPDDQLNAGNEAEKQEHKITNESNQEKSEGNLNEKE 184
           KD  KKENQDEKETK+EAAEAEPPKP DQLNA N+AEK E+KITNES+QEK E NLNEKE
Sbjct: 148 KDG-KKENQDEKETKDEAAEAEPPKPVDQLNADNDAEK-EYKITNESDQEKLETNLNEKE 207

Query: 185 PESSKLNLNENVEGAKHEEMIEKPQVEKNDGNFAEAVKPDTLVSDKQENALENQNPNQQD 244
           PESSKLNLNEN+EGAKHEE IE+PQVE+NDGNF EAVKPDTLVSDKQE ALENQNPNQQD
Sbjct: 208 PESSKLNLNENLEGAKHEEKIEQPQVEENDGNFGEAVKPDTLVSDKQEKALENQNPNQQD 267

Query: 245 IELEEEIKDKAGEAEEKSEKHTETNKTIEVTENGNHRNGTGEVKP 290
           IELE EIKDKAG  EEKSEKHTETNKTIEVTENGNHRNG  EV P
Sbjct: 268 IELEGEIKDKAGATEEKSEKHTETNKTIEVTENGNHRNGGNEVNP 310

[Close]

BLAST of CSPI02G01800.1 vs. NCBI nr
Match: XP_023545855.1 (methyl-CpG-binding domain-containing protein 11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 405.6 bits (1041), Expect = 3.6e-109
Identity = 234/319 (73.35%), Postives = 255/319 (79.94%), Query Frame = 0


Query: 5   QFFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSAR 64
           +FFPKQGNSP+K+EVIF TPTGEE +NKRKLDQYLK+HPGGPA+AEFDWGTGETPRRSAR
Sbjct: 28  KFFPKQGNSPKKYEVIFITPTGEEFSNKRKLDQYLKSHPGGPASAEFDWGTGETPRRSAR 87

Query: 65  ISEKAKVSPPMESEHPKRKRTSVSKKDLKETEAEP-EVMEEKKEVDNPDAGKDESMA--- 124
           ISEKAKV  PMESEHPKRKRTSVSKK LKE E EP EV+EEKKEVDN DAGKDES+A   
Sbjct: 88  ISEKAKVISPMESEHPKRKRTSVSKKGLKEIETEPAEVLEEKKEVDNQDAGKDESIADAE 147

Query: 125 -----------------------------DAGVKDADKKENQDEKETKNEAAEAEPPKPD 184
                                        DA +KDADKKENQDEKETK+EAAEAEPPKPD
Sbjct: 148 VKDDDKNETKDEAAEADPPKPDDQLNADNDADIKDADKKENQDEKETKDEAAEAEPPKPD 207

Query: 185 DQLNAGNEAEKQEHKITNESNQEKSEGNLNEKEPESSKLNLNENVEGAKHEEMIEKPQV- 244
           DQLNA N+AEKQEHKIT+ES QEK E NLNEKEPESSKLNLNEN+EGAKH+E IE+PQV 
Sbjct: 208 DQLNADNDAEKQEHKITSESEQEKLERNLNEKEPESSKLNLNENLEGAKHDEQIEQPQVE 267

Query: 245 EKNDGNFAEAVKPDTLVSDKQENALENQNPNQQDIELEEEIKDKAGEAEEKSEKHTETNK 290
           EKND N  E VKPDTL+SD+QE   ENQ P +QDIELE EIKDKA   EEK+EKHTETNK
Sbjct: 268 EKNDSNLGETVKPDTLLSDRQEKEQENQKPYEQDIELEGEIKDKAAATEEKNEKHTETNK 327

[Close]

BLAST of CSPI02G01800.1 vs. NCBI nr
Match: XP_022946072.1 (methyl-CpG-binding domain-containing protein 11-like [Cucurbita moschata])

HSP 1 Score: 400.2 bits (1027), Expect = 1.5e-107
Identity = 232/319 (72.73%), Postives = 253/319 (79.31%), Query Frame = 0


Query: 5   QFFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSAR 64
           +FFPKQGNSP+K+EVIF TPTGEE +NKRKLDQYLK+HPGGPA+AEFDWGTGETPRRSAR
Sbjct: 28  KFFPKQGNSPKKYEVIFITPTGEEFSNKRKLDQYLKSHPGGPASAEFDWGTGETPRRSAR 87

Query: 65  ISEKAKVSPPMESEHPKRKRTSVSKKDLKETEAEP-EVMEEKKEVDNPDAGKDESMA--- 124
           ISEKAKV  PMESEHPKRKRTSVSKK LKE E EP EV EEKKEVDN DAGKDE++A   
Sbjct: 88  ISEKAKVISPMESEHPKRKRTSVSKKGLKEIETEPAEVREEKKEVDNQDAGKDETIADAE 147

Query: 125 -----------------------------DAGVKDADKKENQDEKETKNEAAEAEPPKPD 184
                                        DA +KDADKKENQDEKETK+EAAEAEPPKPD
Sbjct: 148 VKDDDKNETKDEAAEADPPKPDDQLNADNDADIKDADKKENQDEKETKDEAAEAEPPKPD 207

Query: 185 DQLNAGNEAEKQEHKITNESNQEKSEGNLNEKEPESSKLNLNENVEGAKHEEMIEKPQV- 244
           DQLNA N+AEKQEHKIT+ES QEK E NLNEKEPESSKLNLNEN+EGAKH+E IE+PQV 
Sbjct: 208 DQLNADNDAEKQEHKITSESEQEKLERNLNEKEPESSKLNLNENLEGAKHDEKIEQPQVE 267

Query: 245 EKNDGNFAEAVKPDTLVSDKQENALENQNPNQQDIELEEEIKDKAGEAEEKSEKHTETNK 290
           EKND    E VKPDTL+SD+QE   ENQ P +QDIELE EIKDKA   EEK+EKHTETNK
Sbjct: 268 EKNDSTLGETVKPDTLLSDRQEKEQENQKPCEQDIELEGEIKDKAAATEEKNEKHTETNK 327

[Close]

BLAST of CSPI02G01800.1 vs. TAIR 10
Match: AT1G15340.1 (methyl-CPG-binding domain 10 )

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-22
Identity = 98/285 (34.39%), Postives = 148/285 (51.93%), Query Frame = 0


Query: 6   FFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARI 65
           F+PK+  +PRK E++F  PTGEEI+++++L+QYLKAHPG P  +EF+W TGETPRRS+RI
Sbjct: 22  FYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKAHPGNPVISEFEWTTGETPRRSSRI 81

Query: 66  SEKAKVSPPMESEHP--KRKRTSVSKKDLKETEAEPEVMEEKKEVDNPDAGKDESMADAG 125
           S+K K + P   + P  K++R+S++KKD KE   + E    K+ +D    GK E+     
Sbjct: 82  SQKVKATTPTPDKEPLLKKRRSSLTKKDNKEAAEKNEEAAVKENMDVDKDGKTENA---- 141

Query: 126 VKDADKKENQDEKETKNEAAEAEPPKPDDQLNAGNEAEKQEHKITNESNQEKSEGNLNEK 185
                + E + EKE   E AEAE    + +     +  K+  K T    + ++E    EK
Sbjct: 142 -----EAEKEKEKEGVTEIAEAEKENNEGEKTEAEKVNKEGEK-TEAGKEGQTEIAEAEK 201

Query: 186 EPESSKLNLN----ENVEGAKHEEMIEKPQVEKNDGNFAEAVKPDTLVSDKQENALENQN 245
           E E  K        E V   K    ++  ++EK  G+   A +P      K E   + + 
Sbjct: 202 EKEGEKAEAENKEAEVVRDKKESMEVDTSELEKKAGSGEGAEEP-----SKVEGLKDTEM 261

Query: 246 PNQQDIELEEEIKDKAGEAEEKSEKHTETNKTIEVTENGNHRNGT 285
              Q++  E +++ K   AEEK+E     NK    TE    +N T
Sbjct: 262 KEAQEVVTEADVEKK--PAEEKTE-----NKGSVTTEANGEQNVT 284

[Close]

BLAST of CSPI02G01800.1 vs. TAIR 10
Match: AT3G15790.1 (methyl-CPG-binding domain 11 )

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-18
Identity = 92/257 (35.80%), Postives = 133/257 (51.75%), Query Frame = 0


Query: 6   FFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARI 65
           F+P +  S +K EV+F  PTGEEI+N+++L+QYLK+HPG PA AEFDW T  TPRRSARI
Sbjct: 22  FYPNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHPGNPAIAEFDWTTSGTPRRSARI 81

Query: 66  SEKAKVSPPMESEHPK---RKRTSVSKKDLKETEAEPEVMEEKKEVDNPDAGKDESMADA 125
           SEK K +P  + E PK   R ++ VSKKD  E E      EE   V + +    E +A+ 
Sbjct: 82  SEKTKATPSPDKEPPKKRGRTKSPVSKKD-AEGEKSEGGGEENSHVKDTEMNPPEGIAEN 141

Query: 126 GVKDADKKENQDEKETKNEAAEAEPPKPDDQLNAGNEAEKQEHKITNESNQEKSEGNLNE 185
             ++   K    E E  N+A E    +        N A  QE     ES +EK+  ++++
Sbjct: 142 --ENVTDKNGSGETERVNDAKENIVAE-----ETPNAAPVQEE---GESMKEKALDSVDD 201

Query: 186 KEPESSKLNLNENVEGAKHEEMIEKPQVEKNDGNFAEAVKPDTLVSDKQENALENQNPNQ 245
           K  E+ K     ++E  K+   +EK  VE +D              +K+ +  E +N  +
Sbjct: 202 KSKETDKEKDTGSIE--KNSVDVEKKTVEASD--------------EKKNSEAETRNHEE 251

Query: 246 QDIELEEEIKDKAGEAE 260
             +  E E K+K  E E
Sbjct: 262 NGLTTEAEGKEKTAEGE 251

[Close]

BLAST of CSPI02G01800.1 vs. TAIR 10
Match: AT1G15340.2 (methyl-CPG-binding domain 10 )

HSP 1 Score: 42.7 bits (99), Expect = 5.7e-04
Identity = 79/292 (27.05%), Postives = 128/292 (43.84%), Query Frame = 0


Query: 6   FFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARI 65
           F+PK+  +PRK E++F  PTGEEI+++++L+QYLK +                 + +A  
Sbjct: 22  FYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKDN-----------------KEAAEK 81

Query: 66  SEKAKVSPPMESEHPKRKRTSVSKKDLKETEAEPEVMEEKKEVDNPDAGKDESMADAGVK 125
           +E+A V   M+ +   +   + ++K+ KE E   E+ E +KE +  +  + E +   G K
Sbjct: 82  NEEAAVKENMDVDKDGKTENAEAEKE-KEKEGVTEIAEAEKENNEGEKTEAEKVNKEGEK 141

Query: 126 DADKKENQD-----EKETKNEAAEAEPPKPDDQLNAGNEAEKQEHKITNESNQEKSEGNL 185
               KE Q      EKE + E AEAE         A    +K+E    + S  EK  G+ 
Sbjct: 142 TEAGKEGQTEIAEAEKEKEGEKAEAE------NKEAEVVRDKKESMEVDTSELEKKAGS- 201

Query: 186 NEKEPESSKLNLNENVEGAKHEEMIEKPQVEKNDGNFAEAVKPDTLVSDKQENALENQNP 245
            E   E SK+   ++ E  + +E++ +  VEK         K         E  +    P
Sbjct: 202 GEGAEEPSKVEGLKDTEMKEAQEVVTEADVEKKPAEEKTENKGSVTTEANGEQNVTLGEP 261

Query: 246 N-QQDIELE-----EEIKDKAGEAEEKSEKHTETNKTIEVTENGNHRNGTGE 287
           N   D E +     +E  +K  EAE   E  T+ +   +     N  N T E
Sbjct: 262 NLDADAEADKGKESKEYDEKTTEAEANKENDTQESDEKKTEAAANKENETQE 288

The following BLAST results are available for this feature:

BLAST of CSPI02G01800.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XI36	2.2e-21	34.39	Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LW00	3.4e-17	35.80	Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CSPI02G01800.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG01	8.5e-149	99.65	MBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G006830 PE=4 SV...	[more]
A0A5D3BH67	5.2e-138	95.09	Methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo var. makuwa...	[more]
A0A1S3C687	5.2e-138	95.09	methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1G2N9	7.3e-108	72.73	methyl-CpG-binding domain-containing protein 11-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1KA38	1.8e-106	72.10	methyl-CpG-binding domain-containing protein 11-like OS=Cucurbita maxima OX=3661...	[more]

BLAST of CSPI02G01800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139304.1	5.3e-145	99.30	methyl-CpG-binding domain-containing protein 11 [Cucumis sativus] >KAE8651531.1 ...	[more]
XP_008457463.1	1.1e-137	95.09	PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis melo] >...	[more]
XP_038889539.1	8.3e-122	87.72	methyl-CpG-binding domain-containing protein 11-like [Benincasa hispida]	[more]
XP_023545855.1	3.6e-109	73.35	methyl-CpG-binding domain-containing protein 11-like [Cucurbita pepo subsp. pepo...	[more]
XP_022946072.1	1.5e-107	72.73	methyl-CpG-binding domain-containing protein 11-like [Cucurbita moschata]	[more]

BLAST of CSPI02G01800.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15340.1	1.6e-22	34.39	methyl-CPG-binding domain 10	[more]
AT3G15790.1	2.4e-18	35.80	methyl-CPG-binding domain 11	[more]
AT1G15340.2	5.7e-04	27.05	methyl-CPG-binding domain 10	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 248..268
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..271
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 230..244
None	No IPR available	PANTHER	PTHR33729:SF6	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 11-LIKE	coord: 5..282
IPR039622	Methyl-CpG-binding domain-containing protein 10/11	PANTHER	PTHR33729	METHYL-CPG BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED	coord: 5..282
IPR001739	Methyl-CpG DNA binding	PROSITE	PS50982	MBD	coord: 1..58 score: 9.329516
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 7..74

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI02G01800	CSPI02G01800	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G01800.1.utr5p1	CSPI02G01800.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G01800.1.cds1	CSPI02G01800.1.cds1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G01800.1.utr3p1	CSPI02G01800.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI02G01800.1	CSPI02G01800.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding