CSPI02G01200.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI02G01200.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Peroxiredoxins prx-1 prx-2 prx-3
Location	Chr2: 794729 .. 794974 (+)
Sequence length	246
RNA-Seq Expression	CSPI02G01200.1
Synteny	CSPI02G01200.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCGATGGCAGCCTTAGTGTTTCGGTTTCCACATCTCCTAAACATGCAAACAGAGATGCTGAAACCGTGAGGTCGAATTCGCCGAAAGGCCAGTGTTTATGCTCGCCCACGATGCATCAAGGCTCCTTTAGATGTCGGCTTCATCGTTCGACATCGTCGGCATGGATGAAACGTTCAAAATCAATGCCTACCAACAACCCTGTGGCTTCTCTTTCTCCCAAAGAATCTCTTGAGTCTTCC

mRNA sequence

ATGGCCTCCGATGGCAGCCTTAGTGTTTCGGTTTCCACATCTCCTAAACATGCAAACAGAGATGCTGAAACCGTGAGGTCGAATTCGCCGAAAGGCCAGTGTTTATGCTCGCCCACGATGCATCAAGGCTCCTTTAGATGTCGGCTTCATCGTTCGACATCGTCGGCATGGATGAAACGTTCAAAATCAATGCCTACCAACAACCCTGTGGCTTCTCTTTCTCCCAAAGAATCTCTTGAGTCTTCC

Coding sequence (CDS)

ATGGCCTCCGATGGCAGCCTTAGTGTTTCGGTTTCCACATCTCCTAAACATGCAAACAGAGATGCTGAAACCGTGAGGTCGAATTCGCCGAAAGGCCAGTGTTTATGCTCGCCCACGATGCATCAAGGCTCCTTTAGATGTCGGCTTCATCGTTCGACATCGTCGGCATGGATGAAACGTTCAAAATCAATGCCTACCAACAACCCTGTGGCTTCTCTTTCTCCCAAAGAATCTCTTGAGTCTTCC

Protein sequence

MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPTNNPVASLSPKESLESS

Homology

[Close]

BLAST of CSPI02G01200.1 vs. ExPASy TrEMBL
Match: A0A0A0LKU3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004705 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.8e-36
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPTNNPVASLSPKESLESS 83
          SKSMPTNNPVASLSPKESLESS
Sbjct: 61 SKSMPTNNPVASLSPKESLESS 82

[Close]

BLAST of CSPI02G01200.1 vs. ExPASy TrEMBL
Match: A0A5A7V1X5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001200 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MASDGSL VSVSTSPKHANRDAET+RS+SPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLGVSVSTSPKHANRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPTNNPVASLSPKESLESS 83
          SKSMP NNPVASLSPK SL SS
Sbjct: 61 SKSMPANNPVASLSPKGSLGSS 82

[Close]

BLAST of CSPI02G01200.1 vs. ExPASy TrEMBL
Match: A0A5D3CHP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00230 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.2e-32
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MASDGSL VSVS+SPKHANRDAET+RS+SPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLGVSVSSSPKHANRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPTNNPVASLSPKESLESS 83
          SKSMP NNPVASLSPK SL SS
Sbjct: 61 SKSMPANNPVASLSPKGSLGSS 82

[Close]

BLAST of CSPI02G01200.1 vs. ExPASy TrEMBL
Match: A0A6J1G498 (uncharacterized protein LOC111450652 OS=Cucurbita moschata OX=3662 GN=LOC111450652 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.3e-30
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1   MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
           MASDGSLSV VSTSPKH NRDAETVRS+SPKGQCLCSPTMHQGSFRCRLHRS SSAWMKR
Sbjct: 43  MASDGSLSVVVSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRSMSSAWMKR 102

Query: 61  SKSMPTNNPVASLSPKESLESS 83
           SKSMP ++PVASLS KESL SS
Sbjct: 103 SKSMPADHPVASLSSKESLGSS 124

[Close]

BLAST of CSPI02G01200.1 vs. ExPASy TrEMBL
Match: A0A061GNT6 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037897 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.3e-17
Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPK-GQCLCSPTMHQGSFRCRLHRSTSSAWMK 60
          MAS G  +++VSTSPK +N +A  V +NSPK GQCLCSPT HQGSFRCR HRS+SSAWMK
Sbjct: 1  MASHG--NITVSTSPKGSNSEA-AVPTNSPKGGQCLCSPTTHQGSFRCRFHRSSSSAWMK 60

Query: 61 RSKSMPTNNPVASLSPKESLESS 83
          RSKSMP N  +ASLSPK S+ES+
Sbjct: 61 RSKSMPANGSLASLSPK-SVEST 79

[Close]

BLAST of CSPI02G01200.1 vs. NCBI nr
Match: KGN60621.1 (hypothetical protein Csa_019426 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 5.7e-36
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPTNNPVASLSPKESLESS 83
          SKSMPTNNPVASLSPKESLESS
Sbjct: 61 SKSMPTNNPVASLSPKESLESS 82

[Close]

BLAST of CSPI02G01200.1 vs. NCBI nr
Match: KAA0061558.1 (hypothetical protein E6C27_scaffold41G001200 [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 2.2e-32
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MASDGSL VSVSTSPKHANRDAET+RS+SPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLGVSVSTSPKHANRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPTNNPVASLSPKESLESS 83
          SKSMP NNPVASLSPK SL SS
Sbjct: 61 SKSMPANNPVASLSPKGSLGSS 82

[Close]

BLAST of CSPI02G01200.1 vs. NCBI nr
Match: TYK10714.1 (hypothetical protein E5676_scaffold332G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 6.5e-32
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MASDGSL VSVS+SPKHANRDAET+RS+SPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLGVSVSSSPKHANRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPTNNPVASLSPKESLESS 83
          SKSMP NNPVASLSPK SL SS
Sbjct: 61 SKSMPANNPVASLSPKGSLGSS 82

[Close]

BLAST of CSPI02G01200.1 vs. NCBI nr
Match: KAG7030425.1 (hypothetical protein SDJN02_08772 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.3 bits (360), Expect = 9.4e-31
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1   MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
           MASDGSLSV VSTSPKH NRDAETVRS+SPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 55  MASDGSLSVVVSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 114

Query: 61  SKSMPTNNPVASLSPKESLESS 83
           SKSMP ++PVASLS KESL SS
Sbjct: 115 SKSMPADHPVASLSSKESLGSS 136

[Close]

BLAST of CSPI02G01200.1 vs. NCBI nr
Match: KAG6586427.1 (hypothetical protein SDJN03_19160, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.0 bits (354), Expect = 4.7e-30
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1   MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
           MAS+GSLSV VS SPKH NRDAET+RS+SPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 60  MASNGSLSVVVSASPKHDNRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 119

Query: 61  SKSMPTNNPVASLSPKESLESS 83
           SKSMP N PVASLSPKE+L SS
Sbjct: 120 SKSMPANKPVASLSPKETLGSS 141

[Close]

BLAST of CSPI02G01200.1 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 48.5 bits (114), Expect = 2.9e-06
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 26 RSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPTN 68
          +S+S +  CLC+PT H GSFRCR HR  +   M R  S+P+N
Sbjct: 57 KSSSVRQNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTSVPSN 98

[Close]

BLAST of CSPI02G01200.1 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 5.5e-05
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 26 RSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSM 65
          +++  K  CLCSPT H GSFRCR+HRS S   ++R+KS+
Sbjct: 36 QTSMTKTNCLCSPTTHPGSFRCRIHRSLS---LQRTKSI 71

[Close]

BLAST of CSPI02G01200.1 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 44.3 bits (103), Expect = 5.5e-05
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 26 RSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSM 65
          +++  K  CLCSPT H GSFRCR+HRS S   ++R+KS+
Sbjct: 36 QTSMTKTNCLCSPTTHPGSFRCRIHRSLS---LQRTKSI 71

[Close]

BLAST of CSPI02G01200.1 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 9.5e-05
Identity = 19/34 (55.88%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 34 CLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPTN 68
          C+CSPT H GSF+C+LHR+ S   ++R+KS+ TN
Sbjct: 32 CICSPTTHPGSFKCKLHRTPS---LQRNKSVETN 62

[Close]

BLAST of CSPI02G01200.1 vs. TAIR 10
Match: AT3G56500.1 (serine-rich protein-related )

HSP 1 Score: 41.6 bits (96), Expect = 3.6e-04
Identity = 18/42 (42.86%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 31  KGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPTNNPVAS 73
           K  C+C+PT H+GSFRCRLHRS++++    +  +    P+ S
Sbjct: 62  KTVCICAPTKHEGSFRCRLHRSSATSHGAATAELHLPKPLLS 103

The following BLAST results are available for this feature:

BLAST of CSPI02G01200.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G01200.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKU3	2.8e-36	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004705 PE=4 SV=1	[more]
A0A5A7V1X5	1.1e-32	92.68	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CHP3	3.2e-32	91.46	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1G498	2.3e-30	89.02	uncharacterized protein LOC111450652 OS=Cucurbita moschata OX=3662 GN=LOC1114506...	[more]
A0A061GNT6	1.3e-17	69.88	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037897 PE=4 SV=1	[more]

BLAST of CSPI02G01200.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60621.1	5.7e-36	100.00	hypothetical protein Csa_019426 [Cucumis sativus]	[more]
KAA0061558.1	2.2e-32	92.68	hypothetical protein E6C27_scaffold41G001200 [Cucumis melo var. makuwa]	[more]
TYK10714.1	6.5e-32	91.46	hypothetical protein E5676_scaffold332G00230 [Cucumis melo var. makuwa]	[more]
KAG7030425.1	9.4e-31	90.24	hypothetical protein SDJN02_08772 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6586427.1	4.7e-30	87.80	hypothetical protein SDJN03_19160, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI02G01200.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13227.1	2.9e-06	50.00	serine-rich protein-related	[more]
AT1G67910.1	5.5e-05	53.85	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	5.5e-05	53.85	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G24577.1	9.5e-05	55.88	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G56500.1	3.6e-04	42.86	serine-rich protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..82
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 1..76
None	No IPR available	PANTHER	PTHR33132:SF37	SERINE-RICH PROTEIN-LIKE PROTEIN	coord: 1..76

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI02G01200	CSPI02G01200	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G01200.mrna.cds.1	CSPI02G01200.mrna.cds.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI02G01200.1	CSPI02G01200.1-protein	polypeptide