CSPI01G24440.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI01G24440.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr1: 19728682 .. 19729098 (+)
Sequence length	417
RNA-Seq Expression	CSPI01G24440.1
Synteny	CSPI01G24440.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAAACTACTCGTCCAAGACATATATAAACTCCGCGGGCTATATCAATTCAGCTTCCCAAGCACCACCCTAGTCCTTACATGTGACGAAAATGAAATACGAAGAGTCAGATATGCGTCGCAGCTGCACTTAGGAACTTGTAATTGCATTCGCGTTTCTTCGCGCAACAACTACAACAATACAACCCATTTCCCTACGCAATACACCGCCTTTGGCAAGGACGCGCCGTTCTTCGCTGAACAACAATTTCAATCTTCTGATTTCAGGGGGAAGGCAGCGGGCGGCCTATCGCATTCGCAGCAGAACTTCCCCCTTCCTATTCCCGGACTTCCGAACATTCTCCCGGTTTCCACCTCTCATCTCAAATTCCTCAATCCCTCTTTATTTTTCATCTCTGCACTATTCTCCATCAAT

mRNA sequence

ATGCATAAACTACTCGTCCAAGACATATATAAACTCCGCGGGCTATATCAATTCAGCTTCCCAAGCACCACCCTAGTCCTTACATGTGACGAAAATGAAATACGAAGAGTCAGATATGCGTCGCAGCTGCACTTAGGAACTTGTAATTGCATTCGCGTTTCTTCGCGCAACAACTACAACAATACAACCCATTTCCCTACGCAATACACCGCCTTTGGCAAGGACGCGCCGTTCTTCGCTGAACAACAATTTCAATCTTCTGATTTCAGGGGGAAGGCAGCGGGCGGCCTATCGCATTCGCAGCAGAACTTCCCCCTTCCTATTCCCGGACTTCCGAACATTCTCCCGGTTTCCACCTCTCATCTCAAATTCCTCAATCCCTCTTTATTTTTCATCTCTGCACTATTCTCCATCAAT

Coding sequence (CDS)

ATGCATAAACTACTCGTCCAAGACATATATAAACTCCGCGGGCTATATCAATTCAGCTTCCCAAGCACCACCCTAGTCCTTACATGTGACGAAAATGAAATACGAAGAGTCAGATATGCGTCGCAGCTGCACTTAGGAACTTGTAATTGCATTCGCGTTTCTTCGCGCAACAACTACAACAATACAACCCATTTCCCTACGCAATACACCGCCTTTGGCAAGGACGCGCCGTTCTTCGCTGAACAACAATTTCAATCTTCTGATTTCAGGGGGAAGGCAGCGGGCGGCCTATCGCATTCGCAGCAGAACTTCCCCCTTCCTATTCCCGGACTTCCGAACATTCTCCCGGTTTCCACCTCTCATCTCAAATTCCTCAATCCCTCTTTATTTTTCATCTCTGCACTATTCTCCATCAAT

Protein sequence

MHKLLVQDIYKLRGLYQFSFPSTTLVLTCDENEIRRVRYASQLHLGTCNCIRVSSRNNYNNTTHFPTQYTAFGKDAPFFAEQQFQSSDFRGKAAGGLSHSQQNFPLPIPGLPNILPVSTSHLKFLNPSLFFISALFSIN

Homology

[Close]

BLAST of CSPI01G24440.1 vs. ExPASy TrEMBL
Match: A0A0A0LVP0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533700 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.3e-72
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MHKLLVQDIYKLRGLYQFSFPSTTLVLTCDENEIRRVRYASQLHLGTCNCIRVSSRNNYN 60
           MHKLLVQDIYKLRGLYQFSFPSTTLVLTC+E EIRRVRYASQLHLGTCNCIRVSSRNNYN
Sbjct: 1   MHKLLVQDIYKLRGLYQFSFPSTTLVLTCEEKEIRRVRYASQLHLGTCNCIRVSSRNNYN 60

Query: 61  NTTHFPTQYTAFGKDAPFFAEQQFQSSDFRGKAAGGLSHSQQNFPLPIPGLPNILPVSTS 120
           NTTHFPTQYTAFGKDAPFFAEQQFQSSDFRGKAAGGLSHSQQNFPLPIPGLPNILPVSTS
Sbjct: 61  NTTHFPTQYTAFGKDAPFFAEQQFQSSDFRGKAAGGLSHSQQNFPLPIPGLPNILPVSTS 120

Query: 121 HLKFLNPSLFFISALFSIN 140
           HLKFLNPSLFFISALFSIN
Sbjct: 121 HLKFLNPSLFFISALFSIN 139

[Close]

BLAST of CSPI01G24440.1 vs. NCBI nr
Match: KGN65863.1 (hypothetical protein Csa_023209 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 1.1e-71
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MHKLLVQDIYKLRGLYQFSFPSTTLVLTCDENEIRRVRYASQLHLGTCNCIRVSSRNNYN 60
           MHKLLVQDIYKLRGLYQFSFPSTTLVLTC+E EIRRVRYASQLHLGTCNCIRVSSRNNYN
Sbjct: 1   MHKLLVQDIYKLRGLYQFSFPSTTLVLTCEEKEIRRVRYASQLHLGTCNCIRVSSRNNYN 60

Query: 61  NTTHFPTQYTAFGKDAPFFAEQQFQSSDFRGKAAGGLSHSQQNFPLPIPGLPNILPVSTS 120
           NTTHFPTQYTAFGKDAPFFAEQQFQSSDFRGKAAGGLSHSQQNFPLPIPGLPNILPVSTS
Sbjct: 61  NTTHFPTQYTAFGKDAPFFAEQQFQSSDFRGKAAGGLSHSQQNFPLPIPGLPNILPVSTS 120

Query: 121 HLKFLNPSLFFISALFSIN 140
           HLKFLNPSLFFISALFSIN
Sbjct: 121 HLKFLNPSLFFISALFSIN 139

The following BLAST results are available for this feature:

BLAST of CSPI01G24440.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G24440.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVP0	5.3e-72	98.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533700 PE=4 SV=1	[more]

BLAST of CSPI01G24440.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65863.1	1.1e-71	98.56	hypothetical protein Csa_023209 [Cucumis sativus]	[more]

BLAST of CSPI01G24440.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G24440	CSPI01G24440	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G24440.mrna.cds.1	CSPI01G24440.mrna.cds.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G24440.1	CSPI01G24440.1-protein	polypeptide