CSPI01G24270.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI01G24270.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	UDP-glycosyltransferase 87A2-like
Location	Chr1: 19636254 .. 19636601 (-)
Sequence length	243
RNA-Seq Expression	CSPI01G24270.1
Synteny	CSPI01G24270.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGACCCGAGGGGAAGCTCCTCGGTTGAAGGAGCTATGCGAAGAAAAGGGATTAGTAGTGCCATGGTGTGTACAATTGAAGGTCTTGTGTCATTCCTCGGTAGGTAGGTTTTGGAGTCATTGTGTCTGGAATTCAACTCTGGAAGCTGTTTATGCAGGGATTCCTATGATCACTTTTCTTCTATTTTTTTTTATCAAACTCCCAACAGTACCCACATTGTTGAAGACTGGAAGATTGGGTGTAGGGTTAAAAGAACCAAGGTTGGAACTGAAACATTAATTGTAAAGGAAGAAATATCAGAGATTGCCCAAAGGTTTATGGATCTCAGCAGTTCCGAGGGATAG

mRNA sequence

ATGGGTGACCCGAGGGGAAGCTCCTCGGTTGAAGGAGCTATGCGAAGAAAAGGGATTAGTAGTGCCATGGTGTGTACAATTGAAGGTCTTGTGTCATTCCTCGGTAGTACCCACATTGTTGAAGACTGGAAGATTGGGTGTAGGGTTAAAAGAACCAAGGTTGGAACTGAAACATTAATTGTAAAGGAAGAAATATCAGAGATTGCCCAAAGGTTTATGGATCTCAGCAGTTCCGAGGGATAG

Coding sequence (CDS)

ATGGGTGACCCGAGGGGAAGCTCCTCGGTTGAAGGAGCTATGCGAAGAAAAGGGATTAGTAGTGCCATGGTGTGTACAATTGAAGGTCTTGTGTCATTCCTCGGTAGTACCCACATTGTTGAAGACTGGAAGATTGGGTGTAGGGTTAAAAGAACCAAGGTTGGAACTGAAACATTAATTGTAAAGGAAGAAATATCAGAGATTGCCCAAAGGTTTATGGATCTCAGCAGTTCCGAGGGATAG

Protein sequence

MGDPRGSSSVEGAMRRKGISSAMVCTIEGLVSFLGSTHIVEDWKIGCRVKRTKVGTETLIVKEEISEIAQRFMDLSSSEG*

Homology

[Close]

BLAST of CSPI01G24270.1 vs. ExPASy Swiss-Prot
Match: O64733 (UDP-glycosyltransferase 87A2 OS=Arabidopsis thaliana OX=3702 GN=UGT87A2 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.7e-06
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 34  LGSTHIVEDWKIGCRVKRTKVGTETLIVKEEISEIAQRFMDLSSSEG 81
           L +  IVEDW++G R++RTK   E LI +EEI E+ +RFMD  S EG
Sbjct: 371 LNAKMIVEDWRVGMRIERTK-KNELLIGREEIKEVVKRFMDRESEEG 416

[Close]

BLAST of CSPI01G24270.1 vs. ExPASy Swiss-Prot
Match: O64732 (UDP-glycosyltransferase 87A1 OS=Arabidopsis thaliana OX=3702 GN=UGT87A1 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-04
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 33  FLGSTHIVEDWKIGCRVKRTKVGTETLIVKEEISEIAQRFMDLSSSEG 81
           FL +  IVE+W++G  ++R K   E LIV +EI E+ +RFMD  S EG
Sbjct: 355 FLNAKMIVEEWRVGMGIERKK-QMELLIVSDEIKELVKRFMDGESEEG 401

[Close]

BLAST of CSPI01G24270.1 vs. ExPASy TrEMBL
Match: A0A0A0M0X4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533530 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.3e-35
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MGDPRGSSSVEGAMRRKGISSAMVCTIEGLVSFLGSTHIVEDWKIGCRVKRTKVGTETLI 60
          MGDPRGSSSVEGAMRRKGISSAMVCTIEGLVSFLGSTHIVEDWKIGCRVKRTKVGTETLI
Sbjct: 1  MGDPRGSSSVEGAMRRKGISSAMVCTIEGLVSFLGSTHIVEDWKIGCRVKRTKVGTETLI 60

Query: 61 VKEEISEIAQRFMDLSSSEG 81
          VKEEISEIAQRFMDLSSS+G
Sbjct: 61 VKEEISEIAQRFMDLSSSKG 80

[Close]

BLAST of CSPI01G24270.1 vs. ExPASy TrEMBL
Match: A0A6J1DNL0 (UDP-glycosyltransferase 87A2-like OS=Momordica charantia OX=3673 GN=LOC111022035 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 8.5e-14
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 36  STHIVEDWKIGCRVKRTKVGTETLIVKEEISEIAQRFMDLSSSEG 81
           STHIVEDWKIG RVKRTKVGTETLIVKEEISEI QRFMDL+SSEG
Sbjct: 368 STHIVEDWKIGWRVKRTKVGTETLIVKEEISEIVQRFMDLNSSEG 412

[Close]

BLAST of CSPI01G24270.1 vs. ExPASy TrEMBL
Match: A0A6J1HJ59 (UDP-glycosyltransferase 87A2-like OS=Cucurbita moschata OX=3662 GN=LOC111464946 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.2e-13
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 36  STHIVEDWKIGCRVKRTKVGTETLIVKEEISEIAQRFMDLSSSEG 81
           STHIVEDWKIGCRV+ TKVG ETLI+KEEISEI QRFMDLSS EG
Sbjct: 368 STHIVEDWKIGCRVQETKVGAETLILKEEISEIVQRFMDLSSPEG 412

[Close]

BLAST of CSPI01G24270.1 vs. ExPASy TrEMBL
Match: A0A2N9FHM6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14550 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.5e-07
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 36  STHIVEDWKIGCRVKRTKVGTETLIVKEEISEIAQRFMDLSSSEG 81
           S  IVEDWKIG RVKR +VG+E L+ KE+I E+ QRFMDL S EG
Sbjct: 356 SRQIVEDWKIGWRVKRAEVGSEILVEKEDILELVQRFMDLESYEG 400

[Close]

BLAST of CSPI01G24270.1 vs. ExPASy TrEMBL
Match: A0A2N9FHG1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14544 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 39  IVEDWKIGCRVKRTKVGTETLIVKEEISEIAQRFMDLSSSE 80
           IVEDWKIG RVKR+KVG+E  + KEEISE+ QRFM++ S E
Sbjct: 380 IVEDWKIGWRVKRSKVGSEMFVTKEEISELVQRFMNVESGE 420

[Close]

BLAST of CSPI01G24270.1 vs. NCBI nr
Match: KGN65846.1 (hypothetical protein Csa_023323 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 4.8e-35
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MGDPRGSSSVEGAMRRKGISSAMVCTIEGLVSFLGSTHIVEDWKIGCRVKRTKVGTETLI 60
          MGDPRGSSSVEGAMRRKGISSAMVCTIEGLVSFLGSTHIVEDWKIGCRVKRTKVGTETLI
Sbjct: 1  MGDPRGSSSVEGAMRRKGISSAMVCTIEGLVSFLGSTHIVEDWKIGCRVKRTKVGTETLI 60

Query: 61 VKEEISEIAQRFMDLSSSEG 81
          VKEEISEIAQRFMDLSSS+G
Sbjct: 61 VKEEISEIAQRFMDLSSSKG 80

[Close]

BLAST of CSPI01G24270.1 vs. NCBI nr
Match: XP_022154884.1 (UDP-glycosyltransferase 87A2-like [Momordica charantia])

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-13
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 36  STHIVEDWKIGCRVKRTKVGTETLIVKEEISEIAQRFMDLSSSEG 81
           STHIVEDWKIG RVKRTKVGTETLIVKEEISEI QRFMDL+SSEG
Sbjct: 368 STHIVEDWKIGWRVKRTKVGTETLIVKEEISEIVQRFMDLNSSEG 412

[Close]

BLAST of CSPI01G24270.1 vs. NCBI nr
Match: XP_022965002.1 (UDP-glycosyltransferase 87A2-like [Cucurbita moschata])

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-12
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 36  STHIVEDWKIGCRVKRTKVGTETLIVKEEISEIAQRFMDLSSSEG 81
           STHIVEDWKIGCRV+ TKVG ETLI+KEEISEI QRFMDLSS EG
Sbjct: 368 STHIVEDWKIGCRVQETKVGAETLILKEEISEIVQRFMDLSSPEG 412

[Close]

BLAST of CSPI01G24270.1 vs. NCBI nr
Match: XP_023520159.1 (UDP-glycosyltransferase 87A2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-12
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 36  STHIVEDWKIGCRVKRTKVGTETLIVKEEISEIAQRFMDLSSSEG 81
           STHIVEDWKIGCRV+ TKVG ETLI+KEEISEI QRFMDLSS EG
Sbjct: 368 STHIVEDWKIGCRVQETKVGAETLILKEEISEIVQRFMDLSSPEG 412

[Close]

BLAST of CSPI01G24270.1 vs. NCBI nr
Match: XP_023520158.1 (UDP-glycosyltransferase 87A2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-12
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 36  STHIVEDWKIGCRVKRTKVGTETLIVKEEISEIAQRFMDLSSSEG 81
           STHIVEDWKIGCRV+ TKVG ETLI+KEEISEI QRFMDLSS EG
Sbjct: 415 STHIVEDWKIGCRVQETKVGAETLILKEEISEIVQRFMDLSSPEG 459

[Close]

BLAST of CSPI01G24270.1 vs. TAIR 10
Match: AT2G30140.1 (UDP-Glycosyltransferase superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-07
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 34  LGSTHIVEDWKIGCRVKRTKVGTETLIVKEEISEIAQRFMDLSSSEG 81
           L +  IVEDW++G R++RTK   E LI +EEI E+ +RFMD  S EG
Sbjct: 371 LNAKMIVEDWRVGMRIERTK-KNELLIGREEIKEVVKRFMDRESEEG 416

[Close]

BLAST of CSPI01G24270.1 vs. TAIR 10
Match: AT2G30140.2 (UDP-Glycosyltransferase superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-07
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 34  LGSTHIVEDWKIGCRVKRTKVGTETLIVKEEISEIAQRFMDLSSSEG 81
           L +  IVEDW++G R++RTK   E LI +EEI E+ +RFMD  S EG
Sbjct: 370 LNAKMIVEDWRVGMRIERTK-KNELLIGREEIKEVVKRFMDRESEEG 415

[Close]

BLAST of CSPI01G24270.1 vs. TAIR 10
Match: AT2G30150.1 (UDP-Glycosyltransferase superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 8.5e-06
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 33  FLGSTHIVEDWKIGCRVKRTKVGTETLIVKEEISEIAQRFMDLSSSEG 81
           FL +  IVE+W++G  ++R K   E LIV +EI E+ +RFMD  S EG
Sbjct: 355 FLNAKMIVEEWRVGMGIERKK-QMELLIVSDEIKELVKRFMDGESEEG 401

The following BLAST results are available for this feature:

BLAST of CSPI01G24270.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64733	3.7e-06	53.19	UDP-glycosyltransferase 87A2 OS=Arabidopsis thaliana OX=3702 GN=UGT87A2 PE=1 SV=...	[more]
O64732	1.2e-04	47.92	UDP-glycosyltransferase 87A1 OS=Arabidopsis thaliana OX=3702 GN=UGT87A1 PE=2 SV=...	[more]

BLAST of CSPI01G24270.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0X4	2.3e-35	98.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533530 PE=4 SV=1	[more]
A0A6J1DNL0	8.5e-14	93.33	UDP-glycosyltransferase 87A2-like OS=Momordica charantia OX=3673 GN=LOC111022035...	[more]
A0A6J1HJ59	7.2e-13	86.67	UDP-glycosyltransferase 87A2-like OS=Cucurbita moschata OX=3662 GN=LOC111464946 ...	[more]
A0A2N9FHM6	4.5e-07	66.67	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14550 PE=4 SV=1	[more]
A0A2N9FHG1	1.3e-06	68.29	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14544 PE=4 SV=1	[more]

BLAST of CSPI01G24270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65846.1	4.8e-35	98.75	hypothetical protein Csa_023323 [Cucumis sativus]	[more]
XP_022154884.1	1.8e-13	93.33	UDP-glycosyltransferase 87A2-like [Momordica charantia]	[more]
XP_022965002.1	1.5e-12	86.67	UDP-glycosyltransferase 87A2-like [Cucurbita moschata]	[more]
XP_023520159.1	1.5e-12	86.67	UDP-glycosyltransferase 87A2-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023520158.1	1.5e-12	86.67	UDP-glycosyltransferase 87A2-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI01G24270.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30140.1	2.6e-07	53.19	UDP-Glycosyltransferase superfamily protein	[more]
AT2G30140.2	2.6e-07	53.19	UDP-Glycosyltransferase superfamily protein	[more]
AT2G30150.1	8.5e-06	47.92	UDP-Glycosyltransferase superfamily protein	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G24270	CSPI01G24270	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G24270.1.cds2	CSPI01G24270.1.cds2	CDS
CSPI01G24270.1.cds1	CSPI01G24270.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G24270.1	CSPI01G24270.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008194	UDP-glycosyltransferase activity