CSPI01G08480.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI01G08480.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr1: 5322001 .. 5322438 (+)
Sequence length	438
RNA-Seq Expression	CSPI01G08480.1
Synteny	CSPI01G08480.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAAACCCAATTGAAGAATGAAAATGAAGATTAGGAAAACTAAATACAACCCAGTAACCGTAAGGGAGAAGAAAAGAAAGTCATGACCGCCAATCGGAAGTCGGTGAAGAGAAAGAAACTTAAGAATCAAGAAAGGGAAATGGGTACGTCGTATGAAAAGAGGATGATGAATTCGAATGCAATAAGAAGAAGAAAGAAGTGGGAGGATAAGAAGAAGAAGAAGAAGAATAAGAAGGTATTGTTACTTGGAGAAGAGGAAGAAGAAGAAGAAGAGGGAATTCGTCAGTTATAAGAATTTTGAAGAAGAATTGGACGGTTTGTAAAGATTAAGATGGGCGGTGCGCTATTAGTTTTTGGTTGAACCCATTACATTTTTTTATTTCAAAGCTTGTGCCTTGAAGGCGGTAACTCCGTATCCCACTAGCTTACCCCTCCCC

mRNA sequence

CAGAAACCCAATTGAAGAATGAAAATGAAGATTAGGAAAACTAAATACAACCCAGTAACCGTAAGGGAGAAGAAAAGAAAGTCATGACCGCCAATCGGAAGTCGGTGAAGAGAAAGAAACTTAAGAATCAAGAAAGGGAAATGGGTACGTCGTATGAAAAGAGGATGATGAATTCGAATGCAATAAGAAGAAGAAAGAAGTGGGAGGATAAGAAGAAGAAGAAGAAGAATAAGAAGGTATTGTTACTTGGAGAAGAGGAAGAAGAAGAAGAAGAGGGAATTCGTCAGTTATAAGAATTTTGAAGAAGAATTGGACGGTTTGTAAAGATTAAGATGGGCGGTGCGCTATTAGTTTTTGGTTGAACCCATTACATTTTTTTATTTCAAAGCTTGTGCCTTGAAGGCGGTAACTCCGTATCCCACTAGCTTACCCCTCCCC

Coding sequence (CDS)

ATGACCGCCAATCGGAAGTCGGTGAAGAGAAAGAAACTTAAGAATCAAGAAAGGGAAATGGGTACGTCGTATGAAAAGAGGATGATGAATTCGAATGCAATAAGAAGAAGAAAGAAGTGGGAGGATAAGAAGAAGAAGAAGAAGAATAAGAAGGTATTGTTACTTGGAGAAGAGGAAGAAGAAGAAGAAGAGGGAATTCGTCAGTTATAA

Protein sequence

MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWEDKKKKKKNKKVLLLGEEEEEEEEGIRQL*

Homology

[Close]

BLAST of CSPI01G08480.1 vs. ExPASy TrEMBL
Match: A0A0A0LTH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046070 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.1e-23
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWED-KKKKKKNKKVLLLGEEE 60
          MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWED KKKKKKNKKVLLLGEEE
Sbjct: 1  MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWEDKKKKKKKNKKVLLLGEEE 60

Query: 61 EEEEEGIRQL 70
          EEEEEGIRQL
Sbjct: 61 EEEEEGIRQL 70

[Close]

BLAST of CSPI01G08480.1 vs. NCBI nr
Match: KGN64309.1 (hypothetical protein Csa_014297 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWED-KKKKKKNKKVLLLGEEE 60
          MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWED KKKKKKNKKVLLLGEEE
Sbjct: 1  MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWEDKKKKKKKNKKVLLLGEEE 60

Query: 61 EEEEEGIRQL 70
          EEEEEGIRQL
Sbjct: 61 EEEEEGIRQL 70

The following BLAST results are available for this feature:

BLAST of CSPI01G08480.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G08480.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTH8	5.1e-23	98.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046070 PE=4 SV=1	[more]

BLAST of CSPI01G08480.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64309.1	1.1e-22	98.57	hypothetical protein Csa_014297 [Cucumis sativus]	[more]

BLAST of CSPI01G08480.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..37

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G08480	CSPI01G08480	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G08480.1.utr5p1	CSPI01G08480.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G08480.1.cds1	CSPI01G08480.1.cds1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G08480.1.utr3p1	CSPI01G08480.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G08480.1	CSPI01G08480.1-protein	polypeptide