Bhi08M000977 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi08M000977
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Mini zinc finger
Location	chr8: 36733101 .. 36733421 (-)
Sequence length	321
RNA-Seq Expression	Bhi08M000977
Synteny	Bhi08M000977

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAGAAACGTCAAGTAGTAGTGAAAAGATCATCAGATGGAGGATCATCATCATCATCATCAAATAATAACAACAGTAATCGAAATAGAAATAGTAGTTCATCTTCAAGAGTAAGAAATGTGGTCAGATATGGAGAGTGCCAAAAGAATCATGCTGCAAATATTGGTGGATATGCTGTTGATGGCTGCACTGAGTTTCTAGCAACTGCTGAAGAAGGCTCTCATGGAGCTCTCATTTGTGCTGCTTGTGGTTGCCACAGGAATTTCCATAGAAGAGAAGTTGAATCTGAAGTTGTTTGTGAGTACTCTCCTCCATAA

mRNA sequence

ATGATGAAGAAACGTCAAGTAGTAGTGAAAAGATCATCAGATGGAGGATCATCATCATCATCATCAAATAATAACAACAGTAATCGAAATAGAAATAGTAGTTCATCTTCAAGAGTAAGAAATGTGGTCAGATATGGAGAGTGCCAAAAGAATCATGCTGCAAATATTGGTGGATATGCTGTTGATGGCTGCACTGAGTTTCTAGCAACTGCTGAAGAAGGCTCTCATGGAGCTCTCATTTGTGCTGCTTGTGGTTGCCACAGGAATTTCCATAGAAGAGAAGTTGAATCTGAAGTTGTTTGTGAGTACTCTCCTCCATAA

Coding sequence (CDS)

ATGATGAAGAAACGTCAAGTAGTAGTGAAAAGATCATCAGATGGAGGATCATCATCATCATCATCAAATAATAACAACAGTAATCGAAATAGAAATAGTAGTTCATCTTCAAGAGTAAGAAATGTGGTCAGATATGGAGAGTGCCAAAAGAATCATGCTGCAAATATTGGTGGATATGCTGTTGATGGCTGCACTGAGTTTCTAGCAACTGCTGAAGAAGGCTCTCATGGAGCTCTCATTTGTGCTGCTTGTGGTTGCCACAGGAATTTCCATAGAAGAGAAGTTGAATCTGAAGTTGTTTGTGAGTACTCTCCTCCATAA

Protein sequence

MMKKRQVVVKRSSDGGSSSSSSNNNNSNRNRNSSSSSRVRNVVRYGECQKNHAANIGGYAVDGCTEFLATAEEGSHGALICAACGCHRNFHRREVESEVVCEYSPP

Homology

[Close]

BLAST of Bhi08M000977 vs. TAIR 10
Match: AT1G74660.1 (mini zinc finger 1 )

HSP 1 Score: 127.1 bits (318), Expect = 8.4e-30
Identity = 70/106 (66.04%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 1   MMKKRQVVVKRSSDGGSSSSSSNNNNSNRNRNSSSSSRVRNVVRYGECQKNHAANIGGYA 60
           MMKKRQ+V+K+ S   ++SSS    +S     SSSSS + N VRY ECQKNHAANIGGYA
Sbjct: 1   MMKKRQMVIKQRSRNSNTSSSWTTTSS-----SSSSSEISN-VRYVECQKNHAANIGGYA 60

Query: 61  VDGCTEFLATAEEGSHGALICAACGCHRNFHRREVESEVVCEYSPP 107
           VDGC EF+A   EG+  AL CAACGCHRNFHR+EV++EVVCEYSPP
Sbjct: 61  VDGCREFMAAGVEGTVDALRCAACGCHRNFHRKEVDTEVVCEYSPP 100

[Close]

BLAST of Bhi08M000977 vs. TAIR 10
Match: AT1G18835.1 (mini zinc finger )

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-26
Identity = 63/105 (60.00%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 2   MKKRQVVVKRSSDGGSSSSSSNNNNSNRNRNSSSSSRVRNVVRYGECQKNHAANIGGYAV 61
           MKKRQVV+K+     + +SSS+N                  VRY ECQKNHAANIGGYAV
Sbjct: 1   MKKRQVVIKQRKSSYTMTSSSSN------------------VRYVECQKNHAANIGGYAV 60

Query: 62  DGCTEFLATAEEGSHGALICAACGCHRNFHRREVESEVVCEYSPP 107
           DGC EF+A+   G   AL CAACGCHRNFHRREV++EVVCEYSPP
Sbjct: 61  DGCREFMAS---GGDDALTCAACGCHRNFHRREVDTEVVCEYSPP 84

[Close]

BLAST of Bhi08M000977 vs. TAIR 10
Match: AT3G28917.1 (mini zinc finger 2 )

HSP 1 Score: 112.1 bits (279), Expect = 2.8e-25
Identity = 61/106 (57.55%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 2   MKKRQVVVKRSSDGGSSSSSSNNNNSNRNRNSSSSSRVRNVVRYGECQKNHAANIGGYAV 61
           M+KRQVV++R+S    S SS           S++SS     VRYGECQKNHAA +GGYAV
Sbjct: 1   MRKRQVVLRRASPEEPSRSS-----------STASSLTVRTVRYGECQKNHAAAVGGYAV 60

Query: 62  DGCTEFLAT-AEEGSHGALICAACGCHRNFHRREVESEVVCEYSPP 107
           DGC EF+A+  EEG+  AL CAACGCHR+FHRRE+E+EVVC+ + P
Sbjct: 61  DGCREFMASRGEEGTVAALTCAACGCHRSFHRREIETEVVCDCNSP 95

[Close]

BLAST of Bhi08M000977 vs. TAIR 10
Match: AT3G50890.1 (homeobox protein 28 )

HSP 1 Score: 84.3 bits (207), Expect = 6.3e-17
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 29  RNRNSSSSSRVRNVVRYGECQKNHAANIGGYAVDGCTEFLATAEEGSHGALICAACGCHR 88
           +  N    +RV    +Y ECQKNHAA+ GG+ VDGC EF+A  EEG+ GAL CAAC CHR
Sbjct: 44  KKENQKPKTRVDQGAKYRECQKNHAASTGGHVVDGCCEFMAGGEEGTLGALKCAACNCHR 103

Query: 89  NFHRREV 96
           +FHR+EV
Sbjct: 104 SFHRKEV 110

[Close]

BLAST of Bhi08M000977 vs. TAIR 10
Match: AT4G24660.1 (homeobox protein 22 )

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-15
Identity = 44/82 (53.66%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 16  GSSSSSSNNNNSNRNRNSSSSSRVRNVVRYGECQKNHAANIGGYAVDGCTEFLATAEEGS 75
           G  S S     S+       S  V   +RY EC KNHA NIGG+AVDGC EF+ + E+G+
Sbjct: 20  GYDSLSGEGATSSGGGGVGRSKGVGAKIRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGT 79

Query: 76  HGALICAACGCHRNFHRREVES 98
             AL CAACGCHRNFHR+E ES
Sbjct: 80  LDALKCAACGCHRNFHRKETES 101

[Close]

BLAST of Bhi08M000977 vs. ExPASy Swiss-Prot
Match: Q9CA51 (Mini zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=MIF1 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-28
Identity = 70/106 (66.04%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 1   MMKKRQVVVKRSSDGGSSSSSSNNNNSNRNRNSSSSSRVRNVVRYGECQKNHAANIGGYA 60
           MMKKRQ+V+K+ S   ++SSS    +S     SSSSS + N VRY ECQKNHAANIGGYA
Sbjct: 1   MMKKRQMVIKQRSRNSNTSSSWTTTSS-----SSSSSEISN-VRYVECQKNHAANIGGYA 60

Query: 61  VDGCTEFLATAEEGSHGALICAACGCHRNFHRREVESEVVCEYSPP 107
           VDGC EF+A   EG+  AL CAACGCHRNFHR+EV++EVVCEYSPP
Sbjct: 61  VDGCREFMAAGVEGTVDALRCAACGCHRNFHRKEVDTEVVCEYSPP 100

[Close]

BLAST of Bhi08M000977 vs. ExPASy Swiss-Prot
Match: Q2Q493 (Mini zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=MIF3 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-25
Identity = 63/105 (60.00%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 2   MKKRQVVVKRSSDGGSSSSSSNNNNSNRNRNSSSSSRVRNVVRYGECQKNHAANIGGYAV 61
           MKKRQVV+K+     + +SSS+N                  VRY ECQKNHAANIGGYAV
Sbjct: 1   MKKRQVVIKQRKSSYTMTSSSSN------------------VRYVECQKNHAANIGGYAV 60

Query: 62  DGCTEFLATAEEGSHGALICAACGCHRNFHRREVESEVVCEYSPP 107
           DGC EF+A+   G   AL CAACGCHRNFHRREV++EVVCEYSPP
Sbjct: 61  DGCREFMAS---GGDDALTCAACGCHRNFHRREVDTEVVCEYSPP 84

[Close]

BLAST of Bhi08M000977 vs. ExPASy Swiss-Prot
Match: Q9LJW5 (Mini zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=MIF2 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.9e-24
Identity = 61/106 (57.55%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 2   MKKRQVVVKRSSDGGSSSSSSNNNNSNRNRNSSSSSRVRNVVRYGECQKNHAANIGGYAV 61
           M+KRQVV++R+S    S SS           S++SS     VRYGECQKNHAA +GGYAV
Sbjct: 1   MRKRQVVLRRASPEEPSRSS-----------STASSLTVRTVRYGECQKNHAAAVGGYAV 60

Query: 62  DGCTEFLAT-AEEGSHGALICAACGCHRNFHRREVESEVVCEYSPP 107
           DGC EF+A+  EEG+  AL CAACGCHR+FHRRE+E+EVVC+ + P
Sbjct: 61  DGCREFMASRGEEGTVAALTCAACGCHRSFHRREIETEVVCDCNSP 95

[Close]

BLAST of Bhi08M000977 vs. ExPASy Swiss-Prot
Match: Q0J5F8 (Mini zinc finger protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=MIF4 PE=2 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-18
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 43  VRYGECQKNHAANIGGYAVDGCTEFLATAEEGSHGALICAACGCHRNFHRREVESEVVC 102
           VRYGEC++NHAA +GG+AVDGC EFLA  EEG+ GAL CAACGCHR+FHRR V  +  C
Sbjct: 33  VRYGECRRNHAARMGGHAVDGCREFLAEGEEGTGGALRCAACGCHRSFHRRVVVVQQCC 91

[Close]

BLAST of Bhi08M000977 vs. ExPASy Swiss-Prot
Match: B8BIU8 (Mini zinc finger protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=MIF1 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.9e-16
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 18 SSSSSNNNNSNRNRNSSSSSRVRNVVRYGECQKNHAANIGGYAVDGCTEFLATAEEGSHG 77
          S++    N S     ++       VVRY ECQ+NHAA+IGG+AVDGC EF+A+  EG+  
Sbjct: 8  SAAKPYANGSTAAAAAAGRKENNKVVRYRECQRNHAASIGGHAVDGCREFMASGAEGTAA 67

Query: 78 ALICAACGCHRNFHRREVES 98
          AL+CAACGCHR+FHRREVE+
Sbjct: 68 ALLCAACGCHRSFHRREVEA 87

[Close]

BLAST of Bhi08M000977 vs. ExPASy TrEMBL
Match: A0A0A0LVI9 (ZF-HD dimerization-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G033205 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 94/106 (88.68%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 1   MMKKRQVVVKRSSDGGSSSSSSNNNNSNRNRNSSSSSRVRNVVRYGECQKNHAANIGGYA 60
           MMKKRQVVVKRSS+GG SSSSS+ NN+  NRN SSSSRVR+VVRYGECQKNHAANIGGYA
Sbjct: 2   MMKKRQVVVKRSSEGGGSSSSSSANNN--NRNISSSSRVRSVVRYGECQKNHAANIGGYA 61

Query: 61  VDGCTEFLATAEEGSHGALICAACGCHRNFHRREVESEVVCEYSPP 107
           VDGC EFLAT EEGSHGAL CAACGCHRNFHRREVESEVVCEYSPP
Sbjct: 62  VDGCREFLATGEEGSHGALTCAACGCHRNFHRREVESEVVCEYSPP 105

[Close]

BLAST of Bhi08M000977 vs. ExPASy TrEMBL
Match: A0A5A7SZK7 (Mini zinc finger protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00780 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.3e-41
Identity = 93/106 (87.74%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 1   MMKKRQVVVKRSSDGGSSSSSSNNNNSNRNRNSSSSSRVRNVVRYGECQKNHAANIGGYA 60
           MMKKRQVVVKRSS+GG SSSSS+ NN+  NRN SSSSRVR+VVRYGECQKNHAANIGGYA
Sbjct: 2   MMKKRQVVVKRSSEGGGSSSSSSTNNN--NRNISSSSRVRSVVRYGECQKNHAANIGGYA 61

Query: 61  VDGCTEFLATAEEGSHGALICAACGCHRNFHRREVESEVVCEYSPP 107
           VDGC EFLAT EEGS+GAL CAACGCHRNFHRREVESEVVCEYSPP
Sbjct: 62  VDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP 105

[Close]

BLAST of Bhi08M000977 vs. ExPASy TrEMBL
Match: A0A5D3BJJ4 (Mini zinc finger protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00880 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 93/106 (87.74%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 1   MMKKRQVVVKRSSDGGSSSSSSNNNNSNRNRNSSSSSRVRNVVRYGECQKNHAANIGGYA 60
           MMKKRQVVVKRSS+GG SSSSS+ NN+  NRN SSSSRVR+VVRYGECQKNHAANIGGYA
Sbjct: 2   MMKKRQVVVKRSSEGGGSSSSSSANNN--NRNISSSSRVRSVVRYGECQKNHAANIGGYA 61

Query: 61  VDGCTEFLATAEEGSHGALICAACGCHRNFHRREVESEVVCEYSPP 107
           VDGC EFLAT EEGS+GAL CAACGCHRNFHRREVESEVVCEYSPP
Sbjct: 62  VDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP 105

[Close]

BLAST of Bhi08M000977 vs. ExPASy TrEMBL
Match: A0A1S3B557 (mini zinc finger protein 1 OS=Cucumis melo OX=3656 GN=LOC103486103 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 93/106 (87.74%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 1   MMKKRQVVVKRSSDGGSSSSSSNNNNSNRNRNSSSSSRVRNVVRYGECQKNHAANIGGYA 60
           MMKKRQVVVKRSS+GG SSSSS+ NN+  NRN SSSSRVR+VVRYGECQKNHAANIGGYA
Sbjct: 2   MMKKRQVVVKRSSEGGGSSSSSSANNN--NRNISSSSRVRSVVRYGECQKNHAANIGGYA 61

Query: 61  VDGCTEFLATAEEGSHGALICAACGCHRNFHRREVESEVVCEYSPP 107
           VDGC EFLAT EEGS+GAL CAACGCHRNFHRREVESEVVCEYSPP
Sbjct: 62  VDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVCEYSPP 105

[Close]

BLAST of Bhi08M000977 vs. ExPASy TrEMBL
Match: A0A6J1K9G7 (mini zinc finger protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111492884 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.8e-33
Identity = 81/106 (76.42%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   MMKKRQVVVKRSSDGGSSSSSSNNNNSNRNRNSSSSSRVRNVVRYGECQKNHAANIGGYA 60
           MMKKRQV+VKR +DG     SSN N+S    +S+SSS VR++VRYGECQKNHAANIGGYA
Sbjct: 1   MMKKRQVIVKR-TDG-----SSNRNSS----SSTSSSAVRSLVRYGECQKNHAANIGGYA 60

Query: 61  VDGCTEFLATAEEGSHGALICAACGCHRNFHRREVESEVVCEYSPP 107
           VDGCTEFLA  EEGS+GAL CAACGCHRNFHRREVE+EVVCEY PP
Sbjct: 61  VDGCTEFLANGEEGSNGALTCAACGCHRNFHRREVETEVVCEYFPP 96

The following BLAST results are available for this feature:

BLAST of Bhi08M000977 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74660.1	8.4e-30	66.04	mini zinc finger 1	[more]
AT1G18835.1	1.9e-26	60.00	mini zinc finger	[more]
AT3G28917.1	2.8e-25	57.55	mini zinc finger 2	[more]
AT3G50890.1	6.3e-17	58.21	homeobox protein 28	[more]
AT4G24660.1	1.5e-15	53.66	homeobox protein 22	[more]

BLAST of Bhi08M000977 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CA51	1.2e-28	66.04	Mini zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=MIF1 PE=1 SV=1	[more]
Q2Q493	2.7e-25	60.00	Mini zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=MIF3 PE=1 SV=1	[more]
Q9LJW5	3.9e-24	57.55	Mini zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=MIF2 PE=1 SV=1	[more]
Q0J5F8	1.1e-18	69.49	Mini zinc finger protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=MIF4 PE=2...	[more]
B8BIU8	3.9e-16	55.00	Mini zinc finger protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=MIF1 PE=3 S...	[more]

BLAST of Bhi08M000977 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVI9	1.7e-41	88.68	ZF-HD dimerization-type domain-containing protein OS=Cucumis sativus OX=3659 GN=...	[more]
A0A5A7SZK7	6.3e-41	87.74	Mini zinc finger protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A5D3BJJ4	1.1e-40	87.74	Mini zinc finger protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3B557	1.1e-40	87.74	mini zinc finger protein 1 OS=Cucumis melo OX=3656 GN=LOC103486103 PE=4 SV=1	[more]
A0A6J1K9G7	4.8e-33	76.42	mini zinc finger protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111492884 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	PFAM	PF04770	ZF-HD_dimer	coord: 43..95 e-value: 2.3E-28 score: 98.3
IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	TIGRFAM	TIGR01566	TIGR01566	coord: 44..95 e-value: 2.2E-25 score: 86.8
IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	PROSITE	PS51523	ZF_HD_DIMER	coord: 45..94 score: 25.62587
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..41
None	No IPR available	PANTHER	PTHR31948:SF65	MINI ZINC FINGER PROTEIN 1	coord: 21..106
None	No IPR available	PANTHER	PTHR31948	ZINC-FINGER HOMEODOMAIN PROTEIN 2	coord: 21..106

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi08G000977	Bhi08G000977	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi08M000977.exon1	Bhi08M000977.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi08M000977	cds.Bhi08M000977	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi08M000977	Bhi08M000977-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding