Bhi08M000976 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi08M000976
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	CLAVATA3/ESR (CLE)-related protein 45
Location	chr8: 36572569 .. 36572856 (+)
Sequence length	288
RNA-Seq Expression	Bhi08M000976
Synteny	Bhi08M000976

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTTTTGATTCATAGGATGGCCACGCTACTTCTCTGTATTTGGTTTTTGGCTCTTCAACCAGAAGGAAGCAACGGGCTGAGAAACATTGATCTAGCACTCAGATGGGATAAAGCACACATTCCCGTATTCAATAGCTTCAAGTTTGTGAAGGATGTATCTGTTGAGGATGACTGGGGAAGAGCATTGGCTTTTGCACCAGCACCTTTAACAGGTTTCGATCCAACCCAATTGAATAAAAGAAGGATACGAAGAGGATCTGACCCCATTCACAACAAATGTTGA

mRNA sequence

ATGGGGTTTTTGATTCATAGGATGGCCACGCTACTTCTCTGTATTTGGTTTTTGGCTCTTCAACCAGAAGGAAGCAACGGGCTGAGAAACATTGATCTAGCACTCAGATGGGATAAAGCACACATTCCCGTATTCAATAGCTTCAAGTTTGTGAAGGATGTATCTGTTGAGGATGACTGGGGAAGAGCATTGGCTTTTGCACCAGCACCTTTAACAGGTTTCGATCCAACCCAATTGAATAAAAGAAGGATACGAAGAGGATCTGACCCCATTCACAACAAATGTTGA

Coding sequence (CDS)

ATGGGGTTTTTGATTCATAGGATGGCCACGCTACTTCTCTGTATTTGGTTTTTGGCTCTTCAACCAGAAGGAAGCAACGGGCTGAGAAACATTGATCTAGCACTCAGATGGGATAAAGCACACATTCCCGTATTCAATAGCTTCAAGTTTGTGAAGGATGTATCTGTTGAGGATGACTGGGGAAGAGCATTGGCTTTTGCACCAGCACCTTTAACAGGTTTCGATCCAACCCAATTGAATAAAAGAAGGATACGAAGAGGATCTGACCCCATTCACAACAAATGTTGA

Protein sequence

MGFLIHRMATLLLCIWFLALQPEGSNGLRNIDLALRWDKAHIPVFNSFKFVKDVSVEDDWGRALAFAPAPLTGFDPTQLNKRRIRRGSDPIHNKC

Homology

[Close]

BLAST of Bhi08M000976 vs. ExPASy Swiss-Prot
Match: O75051 (Plexin-A2 OS=Homo sapiens OX=9606 GN=PLXNA2 PE=1 SV=4)

HSP 1 Score: 45.4 bits (106), Expect = 4.1e-04
Identity = 21/71 (29.58%), Postives = 37/71 (52.11%), Query Frame = 0


Query: 18   LALQPEGSNGLRNIDLALRWDKAHIPVFNSFKFVKDVSV---EDDWGRALAFAPAPLTGF 77
            + + P  SNGL  + +++  D+AH+     F+++ D  V   E +W  A    P  +TGF
Sbjct: 1005 VCVSPPSSNGLGPVPVSVSVDRAHVDSNLQFEYIDDPRVQRIEPEWSIASGHTPLTITGF 1064

Query: 78   DPTQLNKRRIR 86
            +   + + RIR
Sbjct: 1065 NLDVIQEPRIR 1075

[Close]

BLAST of Bhi08M000976 vs. ExPASy TrEMBL
Match: A0A0A0LQI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033220 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.4e-45
Identity = 85/95 (89.47%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MGFLIHRMATLLLCIWFLALQPEGSNGLRNIDLALRWDKAHIPVFNSFKFVKDVSVEDDW 60
          MGFLIHR+  LLLCIWFLALQPEG+NGL NIDLALRWDKAHIP+FNSFKFVKDVSVEDDW
Sbjct: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60

Query: 61 GRALAFAPAPLTGFDPTQLNKRRIRRGSDPIHNKC 96
          GR LAFAPAP TG DPTQLNKRR+RRGSDPIHNKC
Sbjct: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 95

[Close]

BLAST of Bhi08M000976 vs. ExPASy TrEMBL
Match: A0A5D3BHX9 (CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00900 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.2e-43
Identity = 84/95 (88.42%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 1  MGFLIHRMATLLLCIWFLALQPEGSNGLRNIDLALRWDKAHIPVFNSFKFVKDVSVEDDW 60
          MGFLIHR+A LLLCIWFLALQPEG+NGL NIDLALRWDKAHIP+F+SFKFVKD SVEDDW
Sbjct: 1  MGFLIHRVAMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFSSFKFVKDASVEDDW 60

Query: 61 GRALAFAPAPLTGFDPTQLNKRRIRRGSDPIHNKC 96
          G  LAFAPAP TG DPTQLNKRRIRRGSDPIHNKC
Sbjct: 61 GGMLAFAPAPSTGLDPTQLNKRRIRRGSDPIHNKC 95

[Close]

BLAST of Bhi08M000976 vs. ExPASy TrEMBL
Match: M5WYZ5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.4e-23
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 1  MGFLIHRMATLLLCIWFLALQPEGSNGLRNIDLALRWDKAHIPVFNSFKFVKDVSVEDDW 60
          MGFL +R A L +CI FLALQPE  +GLR++DLALRWDK H+    S   VK V+VED  
Sbjct: 1  MGFLAYRSAVLFVCIGFLALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVKAVAVEDLQ 60

Query: 61 GRALAFAPAPLTGFDPTQLNKRRIRRGSDPIHNKC 96
           + L+ APAP   FDP Q NKR++R+GSDPIHN+C
Sbjct: 61 AK-LSLAPAPSMTFDPNQSNKRKVRKGSDPIHNRC 94

[Close]

BLAST of Bhi08M000976 vs. ExPASy TrEMBL
Match: A0A314XM06 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_31163 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.4e-23
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 1  MGFLIHRMATLLLCIWFLALQPEGSNGLRNIDLALRWDKAHIPVFNSFKFVKDVSVEDDW 60
          MGFL +R A L +CI FLALQPE  +GLR++DLALRWDK H+    S   VK V+VED  
Sbjct: 1  MGFLAYRSAVLFVCIGFLALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVKAVAVEDLQ 60

Query: 61 GRALAFAPAPLTGFDPTQLNKRRIRRGSDPIHNKC 96
           + L+ APAP   FDP Q NKR++R+GSDPIHN+C
Sbjct: 61 AK-LSLAPAPSMTFDPNQSNKRKVRKGSDPIHNRC 94

[Close]

BLAST of Bhi08M000976 vs. ExPASy TrEMBL
Match: A0A2P6P2N1 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0181441 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.0e-22
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 1  MGFLIHRMATLLLCIWFLALQPEGSNGLRNIDLALRWDKAHIPVFNSFKFVKDVSVEDDW 60
          MG L ++ A LL+CI FLALQPE  +GLR++DLALRWDK H    NS   VK V+VED  
Sbjct: 1  MGCLAYKGAILLVCIGFLALQPEKVSGLRSMDLALRWDKRHFSFLNSLHVVKAVAVEDLQ 60

Query: 61 GRALAFAPAPLTGFDPTQLNKRRIRRGSDPIHNKC 96
           + L+ APAP   FDP+Q NKR +R+GSDPIHN+C
Sbjct: 61 AK-LSLAPAPAMTFDPSQSNKRTVRKGSDPIHNRC 94

The following BLAST results are available for this feature:

BLAST of Bhi08M000976 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi08M000976 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O75051	4.1e-04	29.58	Plexin-A2 OS=Homo sapiens OX=9606 GN=PLXNA2 PE=1 SV=4	[more]

BLAST of Bhi08M000976 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQI0	6.4e-45	89.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033220 PE=4 SV=1	[more]
A0A5D3BHX9	1.2e-43	88.42	CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
M5WYZ5	2.4e-23	58.95	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1	[more]
A0A314XM06	2.4e-23	58.95	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_311...	[more]
A0A2P6P2N1	2.0e-22	58.95	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0181441 PE=4...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36726:SF5	CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE11	coord: 1..95
IPR038821	CLE-related protein 45-like	PANTHER	PTHR36726	CLAVATA3/ESR (CLE)-RELATED PROTEIN 45	coord: 1..95

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi08G000976	Bhi08G000976	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi08M000976.exon1	Bhi08M000976.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi08M000976	cds.Bhi08M000976	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi08M000976	Bhi08M000976-protein	polypeptide