Bhi08M000939 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi08M000939
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	LYR motif-containing protein 4
Location	chr8: 35615054 .. 35615320 (-)
Sequence length	267
RNA-Seq Expression	Bhi08M000939
Synteny	Bhi08M000939

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACTCCATCTAGGTCTGAGGTCCTCTCGCTCTTTCGTTCTCTCCTGCGAACGGCGCGTCAATTTCCCGATTATAACATCAGAGAATACACCAAACGCCGCACAATTGATGCCTTCCGAGAAAATCAGAGCCTCTCCGACGCTTCATCCATCTCCTCCGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGCGGCAGGCCCTTGTTTACTCTCTTTACGCGCCTAAGGTCAAGAGCATCATGGATGTAAACCTCTGA

mRNA sequence

ATGGCAACTCCATCTAGGTCTGAGGTCCTCTCGCTCTTTCGTTCTCTCCTGCGAACGGCGCGTCAATTTCCCGATTATAACATCAGAGAATACACCAAACGCCGCACAATTGATGCCTTCCGAGAAAATCAGAGCCTCTCCGACGCTTCATCCATCTCCTCCGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGCGGCAGGCCCTTGTTTACTCTCTTTACGCGCCTAAGGTCAAGAGCATCATGGATGTAAACCTCTGA

Coding sequence (CDS)

ATGGCAACTCCATCTAGGTCTGAGGTCCTCTCGCTCTTTCGTTCTCTCCTGCGAACGGCGCGTCAATTTCCCGATTATAACATCAGAGAATACACCAAACGCCGCACAATTGATGCCTTCCGAGAAAATCAGAGCCTCTCCGACGCTTCATCCATCTCCTCCGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGCGGCAGGCCCTTGTTTACTCTCTTTACGCGCCTAAGGTCAAGAGCATCATGGATGTAAACCTCTGA

Protein sequence

MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKVKSIMDVNL

Homology

[Close]

BLAST of Bhi08M000939 vs. TAIR 10
Match: AT5G61220.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 98.6 bits (244), Expect = 2.7e-21
Identity = 52/84 (61.90%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 5  SRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGKAQLE 64
          S SEVLSL R+LLR  RQFPDYNIREY+KRRT+D FR N++L+D S ++ AYA  K QL 
Sbjct: 3  SSSEVLSLCRALLRAGRQFPDYNIREYSKRRTLDGFRMNKNLTDPSKVTEAYAEAKKQLF 62

Query: 65 VAKRQALVYSLYAPKVKSIMDVNL 89
          VA+R   VY  Y PK K+IM+V L
Sbjct: 63 VAERVLKVYLAYPPKTKNIMEVKL 86

[Close]

BLAST of Bhi08M000939 vs. ExPASy Swiss-Prot
Match: B5FZA8 (LYR motif-containing protein 4 OS=Taeniopygia guttata OX=59729 GN=LYRM4 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-10
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MA  SR++VL L+R+LLR +++F  YN R Y  RR  DAFREN++++D+  I       K
Sbjct: 1  MAASSRAQVLRLYRALLRESQRFSSYNYRTYAIRRIRDAFRENKNIADSEKIEELLNKAK 60

Query: 61 AQLEVAKRQALVYSLYA 78
          A LEV +RQ  +  +YA
Sbjct: 61 ANLEVIQRQGTIDHMYA 77

[Close]

BLAST of Bhi08M000939 vs. ExPASy Swiss-Prot
Match: Q9HD34 (LYR motif-containing protein 4 OS=Homo sapiens OX=9606 GN=LYRM4 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MA  SR++VLSL+R++LR +++F  YN R Y  RR  DAFREN+++ D   I +     K
Sbjct: 1  MAASSRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAK 60

Query: 61 AQLEVAKRQALVYSLYA 78
            L V +RQ  +  LY+
Sbjct: 61 RDLGVIRRQVHIGQLYS 77

[Close]

BLAST of Bhi08M000939 vs. ExPASy Swiss-Prot
Match: Q8K215 (LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-08
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MA  SR++VL L+R+++R ++ F  YN R Y  RR  DAFREN+++ D   I +     K
Sbjct: 1  MAASSRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 AQLEVAKRQALVYSLYA 78
            LE+ +RQ  +  LY+
Sbjct: 61 RDLEIIRRQVHIGQLYS 77

[Close]

BLAST of Bhi08M000939 vs. ExPASy Swiss-Prot
Match: B5XD90 (LYR motif-containing protein 4B OS=Salmo salar OX=8030 GN=lyrm4b PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.6e-08
Identity = 29/79 (36.71%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 7  SEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGKAQLEVA 66
          ++VLSL+R L++ + +FP YN R Y  RR  DAFR N+S+ D   +      G+  L++ 
Sbjct: 6  AQVLSLYRKLMKESNKFPSYNYRTYALRRVQDAFRANRSVEDPKMVEQLLNQGRDNLDMI 65

Query: 67 KRQALVYSLYAPKVKSIMD 86
          +RQ  +  +Y P  K+I++
Sbjct: 66 RRQVAIGKMY-PTQKTIVE 83

[Close]

BLAST of Bhi08M000939 vs. ExPASy Swiss-Prot
Match: Q0VCG0 (LYR motif-containing protein 4 OS=Bos taurus OX=9913 GN=LYRM4 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 30/77 (38.96%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MA  SR++VL L+R++LR +++F  YN R Y  RR  DAFREN+++ D   I +     K
Sbjct: 1  MAASSRAQVLDLYRAMLRESKRFGAYNYRTYAIRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 AQLEVAKRQALVYSLYA 78
            L + +RQ  +  +Y+
Sbjct: 61 RDLGIIRRQVHIGQMYS 77

[Close]

BLAST of Bhi08M000939 vs. ExPASy TrEMBL
Match: A0A6J1C8A4 (LYR motif-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111008892 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.6e-34
Identity = 82/88 (93.18%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MATPSRSE+LSLFRSLLRTARQF DYNIREYTKRR IDAFREN+SLSD SSISSAYAGGK
Sbjct: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDVNL 89
          AQLEVAKRQALVYSLYAPKVKSIMDV L
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDVKL 88

[Close]

BLAST of Bhi08M000939 vs. ExPASy TrEMBL
Match: A0A0A0LST7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039010 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.2e-34
Identity = 79/87 (90.80%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MATPS SE+LSLFRSLLRTARQFPDYNIREY KRRTID+FRENQ+LSDASSISS YAGG+
Sbjct: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDVN 88
          AQLEVAKRQA+VYSLYAPKVKSIMDVN
Sbjct: 61 AQLEVAKRQAIVYSLYAPKVKSIMDVN 87

[Close]

BLAST of Bhi08M000939 vs. ExPASy TrEMBL
Match: A0A251UU63 (Putative complex 1 LYR protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0157171 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 6.0e-29
Identity = 67/86 (77.91%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MATPSRSE+L+LFRSLLR+ARQFPDYNIREYTKRRTIDAFR N++LS+ SSI++A++ G+
Sbjct: 1  MATPSRSEILTLFRSLLRSARQFPDYNIREYTKRRTIDAFRHNKTLSEPSSIAAAFSDGQ 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDV 87
          +QL+VAKRQA+VYSLYAPK+KSIMD+
Sbjct: 61 SQLQVAKRQAVVYSLYAPKIKSIMDI 86

[Close]

BLAST of Bhi08M000939 vs. ExPASy TrEMBL
Match: A0A1S3XFP4 (LYR motif-containing protein 4 OS=Nicotiana tabacum OX=4097 GN=LOC107764517 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.3e-28
Identity = 66/87 (75.86%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MA+PSR EVL+LFRSLL+TARQFPDYNIREYTKRRTID FR+N+ LSD S +++A++ G+
Sbjct: 1  MASPSRGEVLTLFRSLLKTARQFPDYNIREYTKRRTIDGFRQNKDLSDPSKVAAAFSEGR 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDVN 88
          AQLEVAKRQA+VYSLYAPKVKS+M++N
Sbjct: 61 AQLEVAKRQAVVYSLYAPKVKSVMELN 87

[Close]

BLAST of Bhi08M000939 vs. ExPASy TrEMBL
Match: A0A1J6JR59 (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_39690 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.3e-28
Identity = 65/87 (74.71%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60
          MA+PSR EVL+LFRSLL+TARQFPDYNIREYTKRRTIDAF++N+ LSD S +++A++ G+
Sbjct: 1  MASPSRGEVLTLFRSLLKTARQFPDYNIREYTKRRTIDAFQQNKDLSDPSKVAAAFSEGR 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDVN 88
          +QLEVAKRQA+VYSLYAPKVKS+M++N
Sbjct: 61 SQLEVAKRQAIVYSLYAPKVKSVMELN 87

The following BLAST results are available for this feature:

BLAST of Bhi08M000939 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61220.1	2.7e-21	61.90	LYR family of Fe/S cluster biogenesis protein	[more]

BLAST of Bhi08M000939 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B5FZA8	2.1e-10	45.45	LYR motif-containing protein 4 OS=Taeniopygia guttata OX=59729 GN=LYRM4 PE=3 SV=...	[more]
Q9HD34	1.1e-08	42.86	LYR motif-containing protein 4 OS=Homo sapiens OX=9606 GN=LYRM4 PE=1 SV=1	[more]
Q8K215	1.9e-08	40.26	LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1	[more]
B5XD90	9.6e-08	36.71	LYR motif-containing protein 4B OS=Salmo salar OX=8030 GN=lyrm4b PE=3 SV=1	[more]
Q0VCG0	1.2e-07	38.96	LYR motif-containing protein 4 OS=Bos taurus OX=9913 GN=LYRM4 PE=3 SV=1	[more]

BLAST of Bhi08M000939 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C8A4	3.6e-34	93.18	LYR motif-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111008892 PE...	[more]
A0A0A0LST7	6.2e-34	90.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039010 PE=4 SV=1	[more]
A0A251UU63	6.0e-29	77.91	Putative complex 1 LYR protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g015...	[more]
A0A1S3XFP4	1.3e-28	75.86	LYR motif-containing protein 4 OS=Nicotiana tabacum OX=4097 GN=LOC107764517 PE=4...	[more]
A0A1J6JR59	2.3e-28	74.71	Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_39690 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 8..64 e-value: 1.8E-19 score: 69.5
None	No IPR available	PANTHER	PTHR47158	OS08G0239000 PROTEIN	coord: 1..87
None	No IPR available	PANTHER	PTHR47158:SF1	OS08G0239000 PROTEIN	coord: 1..87
None	No IPR available	CDD	cd20264	Complex1_LYR_LYRM4	coord: 8..76 e-value: 1.40115E-22 score: 80.6413

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi08G000939	Bhi08G000939	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi08M000939.exon1	Bhi08M000939.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi08M000939	cds.Bhi08M000939	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi08M000939	Bhi08M000939-protein	polypeptide