Bhi07M000181 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi07M000181
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Beta-ketoacyl-[acyl-carrier-protein] synthase I
Location	chr7: 10052012 .. 10052272 (+)
Sequence length	261
RNA-Seq Expression	Bhi07M000181
Synteny	Bhi07M000181

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCCTGTTGCTGGTTACTGCTCCAAAAAACTCGGTGATGAGTCTCCTTTGTTTCTGCATCTCCAGCTTTTGTTGTCTCTGTCCTTTGCGGGAGAAAGAGACCCTAAGAAGCATATGATGATTACTGGAATGCGGCTTGTCTCTGTCTTTGGCAATGATGTTGACATTGATTCTGATGAGCTGTTTTCTGATAAAAGTGGTATTACTCTAGTCGATCGCTTTGATACTTCAAAGTTTCCTACTTGGTTGAGTGGGTAG

mRNA sequence

ATGCTCCCTGTTGCTGGTTACTGCTCCAAAAAACTCGGTGATGAGTCTCCTTTGTTTCTGCATCTCCAGCTTTTGTTGTCTCTGTCCTTTGCGGGAGAAAGAGACCCTAAGAAGCATATGATGATTACTGGAATGCGGCTTGTCTCTGTCTTTGGCAATGATGTTGACATTGATTCTGATGAGCTGTTTTCTGATAAAAGTGGTATTACTCTAGTCGATCGCTTTGATACTTCAAAGTTTCCTACTTGGTTGAGTGGGTAG

Coding sequence (CDS)

ATGCTCCCTGTTGCTGGTTACTGCTCCAAAAAACTCGGTGATGAGTCTCCTTTGTTTCTGCATCTCCAGCTTTTGTTGTCTCTGTCCTTTGCGGGAGAAAGAGACCCTAAGAAGCATATGATGATTACTGGAATGCGGCTTGTCTCTGTCTTTGGCAATGATGTTGACATTGATTCTGATGAGCTGTTTTCTGATAAAAGTGGTATTACTCTAGTCGATCGCTTTGATACTTCAAAGTTTCCTACTTGGTTGAGTGGGTAG

Protein sequence

MLPVAGYCSKKLGDESPLFLHLQLLLSLSFAGERDPKKHMMITGMRLVSVFGNDVDIDSDELFSDKSGITLVDRFDTSKFPTWLSG

Homology

[Close]

BLAST of Bhi07M000181 vs. TAIR 10
Match: AT5G46290.1 (3-ketoacyl-acyl carrier protein synthase I )

HSP 1 Score: 73.9 bits (180), Expect = 6.9e-14
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 33  ERDPKKHMMITGMRLVSVFGNDVDIDSDELFSDKSGITLVDRFDTSKFPTWLSG 87
           E DPKK ++ITGM LVSVFGNDVD   ++L S +SGI+L+DRFD SKFPT   G
Sbjct: 56  ETDPKKRVVITGMGLVSVFGNDVDAYYEKLLSGESGISLIDRFDASKFPTRFGG 109

[Close]

BLAST of Bhi07M000181 vs. TAIR 10
Match: AT5G46290.2 (3-ketoacyl-acyl carrier protein synthase I )

HSP 1 Score: 73.9 bits (180), Expect = 6.9e-14
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 33  ERDPKKHMMITGMRLVSVFGNDVDIDSDELFSDKSGITLVDRFDTSKFPTWLSG 87
           E DPKK ++ITGM LVSVFGNDVD   ++L S +SGI+L+DRFD SKFPT   G
Sbjct: 56  ETDPKKRVVITGMGLVSVFGNDVDAYYEKLLSGESGISLIDRFDASKFPTRFGG 109

[Close]

BLAST of Bhi07M000181 vs. TAIR 10
Match: AT5G46290.3 (3-ketoacyl-acyl carrier protein synthase I )

HSP 1 Score: 73.9 bits (180), Expect = 6.9e-14
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 33  ERDPKKHMMITGMRLVSVFGNDVDIDSDELFSDKSGITLVDRFDTSKFPTWLSG 87
           E DPKK ++ITGM LVSVFGNDVD   ++L S +SGI+L+DRFD SKFPT   G
Sbjct: 56  ETDPKKRVVITGMGLVSVFGNDVDAYYEKLLSGESGISLIDRFDASKFPTRFGG 109

[Close]

BLAST of Bhi07M000181 vs. ExPASy Swiss-Prot
Match: P52410 (3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=KAS1 PE=1 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 9.6e-13
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 33  ERDPKKHMMITGMRLVSVFGNDVDIDSDELFSDKSGITLVDRFDTSKFPTWLSG 87
           E DPKK ++ITGM LVSVFGNDVD   ++L S +SGI+L+DRFD SKFPT   G
Sbjct: 56  ETDPKKRVVITGMGLVSVFGNDVDAYYEKLLSGESGISLIDRFDASKFPTRFGG 109

[Close]

BLAST of Bhi07M000181 vs. ExPASy Swiss-Prot
Match: P23902 (3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Hordeum vulgare OX=4513 GN=KAS12 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-09
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 33 ERDPKKHMMITGMRLVSVFGNDVDIDSDELFSDKSGITLVDRFDTSKFPTWLSG 87
          E DP+K ++ITGM L SVFG+DVD   D L + +SG+  +DRFD S FPT  +G
Sbjct: 43 ETDPRKRVVITGMGLASVFGSDVDTFYDRLLAGESGVGPIDRFDASSFPTRFAG 96

[Close]

BLAST of Bhi07M000181 vs. ExPASy TrEMBL
Match: A0A5D3DAP3 (Beta-ketoacyl-[acyl-carrier-protein] synthase I OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00310 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.5e-11
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 33  ERDPKKHMMITGMRLVSVFGNDVDIDSDELFSDKSGITLVDRFDTSKFPTWLSG 87
           E+DPKK ++ITGM LVSVFGNDVD   D+L S +SG+TL+DRFD SKFPT   G
Sbjct: 54  EKDPKKRVVITGMGLVSVFGNDVDTYYDKLLSGESGVTLIDRFDASKFPTRFGG 107

[Close]

BLAST of Bhi07M000181 vs. ExPASy TrEMBL
Match: A0A0A0LXL6 (Beta-ketoacyl-[acyl-carrier-protein] synthase I OS=Cucumis sativus OX=3659 GN=Csa_1G447400 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.5e-11
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 33  ERDPKKHMMITGMRLVSVFGNDVDIDSDELFSDKSGITLVDRFDTSKFPTWLSG 87
           E+DPKK ++ITGM LVSVFGNDVD   D+L S +SG+TL+DRFD SKFPT   G
Sbjct: 54  EKDPKKRVVITGMGLVSVFGNDVDTYYDKLLSGESGVTLIDRFDASKFPTRFGG 107

[Close]

BLAST of Bhi07M000181 vs. ExPASy TrEMBL
Match: A0A1S3BAD8 (Beta-ketoacyl-[acyl-carrier-protein] synthase I OS=Cucumis melo OX=3656 GN=LOC103487541 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.5e-11
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 33  ERDPKKHMMITGMRLVSVFGNDVDIDSDELFSDKSGITLVDRFDTSKFPTWLSG 87
           E+DPKK ++ITGM LVSVFGNDVD   D+L S +SG+TL+DRFD SKFPT   G
Sbjct: 54  EKDPKKRVVITGMGLVSVFGNDVDTYYDKLLSGESGVTLIDRFDASKFPTRFGG 107

[Close]

BLAST of Bhi07M000181 vs. ExPASy TrEMBL
Match: D8RG92 (3-oxoacyl-[acyl-carrier-protein] synthase OS=Selaginella moellendorffii OX=88036 GN=SELMODRAFT_171238 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-11
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 33 ERDPKKHMMITGMRLVSVFGNDVDIDSDELFSDKSGITLVDRFDTSKFPTWLSG 87
          ERDPKK ++ITGM LVSVFGNDVD   D+L   +SGITL+DRFD SKFPT   G
Sbjct: 24 ERDPKKRVVITGMGLVSVFGNDVDSFYDKLLQGESGITLIDRFDASKFPTRFGG 77

[Close]

BLAST of Bhi07M000181 vs. ExPASy TrEMBL
Match: A0A5D2P376 (Beta-ketoacyl-[acyl-carrier-protein] synthase I OS=Gossypium tomentosum OX=34277 GN=ES332_A09G095700v1 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.2e-11
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 33  ERDPKKHMMITGMRLVSVFGNDVDIDSDELFSDKSGITLVDRFDTSKFPTWLSG 87
           E+DPKK +++TGM LVSVFGNDVD+  D+L S +SGI L+DRFD SKFPT  +G
Sbjct: 56  EKDPKKRVVVTGMGLVSVFGNDVDVYYDKLLSGESGIGLIDRFDASKFPTRFAG 109

The following BLAST results are available for this feature:

BLAST of Bhi07M000181 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46290.1	6.9e-14	64.81	3-ketoacyl-acyl carrier protein synthase I	[more]
AT5G46290.2	6.9e-14	64.81	3-ketoacyl-acyl carrier protein synthase I	[more]
AT5G46290.3	6.9e-14	64.81	3-ketoacyl-acyl carrier protein synthase I	[more]

BLAST of Bhi07M000181 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52410	9.6e-13	64.81	3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thalia...	[more]
P23902	1.3e-09	53.70	3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Hordeum vulgare OX...	[more]

BLAST of Bhi07M000181 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DAP3	2.5e-11	66.67	Beta-ketoacyl-[acyl-carrier-protein] synthase I OS=Cucumis melo var. makuwa OX=1...	[more]
A0A0A0LXL6	2.5e-11	66.67	Beta-ketoacyl-[acyl-carrier-protein] synthase I OS=Cucumis sativus OX=3659 GN=Cs...	[more]
A0A1S3BAD8	2.5e-11	66.67	Beta-ketoacyl-[acyl-carrier-protein] synthase I OS=Cucumis melo OX=3656 GN=LOC10...	[more]
D8RG92	3.2e-11	68.52	3-oxoacyl-[acyl-carrier-protein] synthase OS=Selaginella moellendorffii OX=88036...	[more]
A0A5D2P376	4.2e-11	64.81	Beta-ketoacyl-[acyl-carrier-protein] synthase I OS=Gossypium tomentosum OX=34277...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000794	Beta-ketoacyl synthase	PANTHER	PTHR11712	POLYKETIDE SYNTHASE-RELATED	coord: 28..86
None	No IPR available	PANTHER	PTHR11712:SF226	3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE I, CHLOROPLASTIC	coord: 28..86

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi07G000181	Bhi07G000181	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi07M000181.exon1	Bhi07M000181.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi07M000181	cds.Bhi07M000181	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi07M000181	Bhi07M000181-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
molecular_function	GO:0004315	3-oxoacyl-[acyl-carrier-protein] synthase activity