Bhi04M000709 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi04M000709
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Cytochrome b-c1 complex subunit 7
Location	chr4: 21832275 .. 21832643 (+)
Sequence length	369
RNA-Seq Expression	Bhi04M000709
Synteny	Bhi04M000709

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCCTTTTTACAGTCCTTCATCGTCCCAAAGAAGAAGATTGGGGATTCATCGCCAGATCGACCCAACACCTTCGTAATTAGGGTAATTGAAACCCTAATCGTTTCTTTTTCTATGGCGTTGATTTCGAATTTTGTTCCGTGGAGATTGATTTTAGGTTGTGTTACTATGTTAGGTCTTCGATTCGATCTGTATGATCCATATTATGATATTGATGTGAAGGAGGCTTTGAATAGACTCCCCAGGGAGGTTATTGATGCGGGCAATCAGCATTTGAAGCGGGCCATGGACCTTTCCATGAAGCATCAGTACCTTCCTATTGATCTTCAAGTTTTTTCCTACTATAGATGTTTATCTCTTTCTTAG

mRNA sequence

ATGGCATCCTTTTTACAGTCCTTCATCGTCCCAAAGAAGAAGATTGGGGATTCATCGCCAGATCGACCCAACACCTTCGTAATTAGGGTAATTGAAACCCTAATCGTTTCTTTTTCTATGGCGTTGATTTCGAATTTTGTTCCGTGGAGATTGATTTTAGGTTGTGTTACTATGTTAGGTCTTCGATTCGATCTGTATGATCCATATTATGATATTGATGTGAAGGAGGCTTTGAATAGACTCCCCAGGGAGGTTATTGATGCGGGCAATCAGCATTTGAAGCGGGCCATGGACCTTTCCATGAAGCATCAGTACCTTCCTATTGATCTTCAAGTTTTTTCCTACTATAGATGTTTATCTCTTTCTTAG

Coding sequence (CDS)

ATGGCATCCTTTTTACAGTCCTTCATCGTCCCAAAGAAGAAGATTGGGGATTCATCGCCAGATCGACCCAACACCTTCGTAATTAGGGTAATTGAAACCCTAATCGTTTCTTTTTCTATGGCGTTGATTTCGAATTTTGTTCCGTGGAGATTGATTTTAGGTTGTGTTACTATGTTAGGTCTTCGATTCGATCTGTATGATCCATATTATGATATTGATGTGAAGGAGGCTTTGAATAGACTCCCCAGGGAGGTTATTGATGCGGGCAATCAGCATTTGAAGCGGGCCATGGACCTTTCCATGAAGCATCAGTACCTTCCTATTGATCTTCAAGTTTTTTCCTACTATAGATGTTTATCTCTTTCTTAG

Protein sequence

MASFLQSFIVPKKKIGDSSPDRPNTFVIRVIETLIVSFSMALISNFVPWRLILGCVTMLGLRFDLYDPYYDIDVKEALNRLPREVIDAGNQHLKRAMDLSMKHQYLPIDLQVFSYYRCLSLS

Homology

[Close]

BLAST of Bhi04M000709 vs. TAIR 10
Match: AT5G25450.2 (Cytochrome bd ubiquinol oxidase, 14kDa subunit )

HSP 1 Score: 87.8 bits (216), Expect = 6.5e-18
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 60  GLRF-DLYDPYYDIDVKEALNRLPREVIDAGNQHLKRAMDLSMKHQYLPIDLQV 113
           GLR+ DLYDP YD+D+KEALNRLPRE++DA NQ L RAMDLSMKH+YLP +LQV
Sbjct: 32  GLRYDDLYDPLYDLDIKEALNRLPREIVDARNQRLMRAMDLSMKHEYLPDNLQV 85

[Close]

BLAST of Bhi04M000709 vs. TAIR 10
Match: AT4G32470.1 (Cytochrome bd ubiquinol oxidase, 14kDa subunit )

HSP 1 Score: 87.4 bits (215), Expect = 8.5e-18
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 60  GLRF-DLYDPYYDIDVKEALNRLPREVIDAGNQHLKRAMDLSMKHQYLPIDLQ 112
           GLR+ DLYD YY +D+KEA+NRLPREV+DA NQ LKRAMDLSMKH+YLP DLQ
Sbjct: 32  GLRYDDLYDQYYSMDIKEAMNRLPREVVDARNQRLKRAMDLSMKHEYLPKDLQ 84

[Close]

BLAST of Bhi04M000709 vs. TAIR 10
Match: AT4G32470.2 (Cytochrome bd ubiquinol oxidase, 14kDa subunit )

HSP 1 Score: 87.4 bits (215), Expect = 8.5e-18
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 60  GLRF-DLYDPYYDIDVKEALNRLPREVIDAGNQHLKRAMDLSMKHQYLPIDLQ 112
           GLR+ DLYD YY +D+KEA+NRLPREV+DA NQ LKRAMDLSMKH+YLP DLQ
Sbjct: 32  GLRYDDLYDQYYSMDIKEAMNRLPREVVDARNQRLKRAMDLSMKHEYLPKDLQ 84

[Close]

BLAST of Bhi04M000709 vs. TAIR 10
Match: AT5G25450.1 (Cytochrome bd ubiquinol oxidase, 14kDa subunit )

HSP 1 Score: 86.3 bits (212), Expect = 1.9e-17
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 60  GLRF-DLYDPYYDIDVKEALNRLPREVIDAGNQHLKRAMDLSMKHQYLPIDLQ 112
           GLR+ DLYDP YD+D+KEALNRLPRE++DA NQ L RAMDLSMKH+YLP +LQ
Sbjct: 32  GLRYDDLYDPLYDLDIKEALNRLPREIVDARNQRLMRAMDLSMKHEYLPDNLQ 84

[Close]

BLAST of Bhi04M000709 vs. ExPASy Swiss-Prot
Match: P48502 (Cytochrome b-c1 complex subunit 7 OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.2e-17
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 60  GLRF-DLYDPYYDIDVKEALNRLPREVIDAGNQHLKRAMDLSMKHQYLPIDLQ 112
           GLR  DLYDP YD+DVKEALNRLPRE++DA NQ L RAMDLSMKHQYLP DLQ
Sbjct: 33  GLRHDDLYDPMYDLDVKEALNRLPREIVDARNQRLLRAMDLSMKHQYLPEDLQ 85

[Close]

BLAST of Bhi04M000709 vs. ExPASy Swiss-Prot
Match: Q9SUU5 (Cytochrome b-c1 complex subunit 7-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=QCR7-1 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-16
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 60  GLRF-DLYDPYYDIDVKEALNRLPREVIDAGNQHLKRAMDLSMKHQYLPIDLQ 112
           GLR+ DLYD YY +D+KEA+NRLPREV+DA NQ LKRAMDLSMKH+YLP DLQ
Sbjct: 32  GLRYDDLYDQYYSMDIKEAMNRLPREVVDARNQRLKRAMDLSMKHEYLPKDLQ 84

[Close]

BLAST of Bhi04M000709 vs. ExPASy Swiss-Prot
Match: F4JWS8 (Cytochrome b-c1 complex subunit 7-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=QCR7-2 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.7e-16
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 60  GLRF-DLYDPYYDIDVKEALNRLPREVIDAGNQHLKRAMDLSMKHQYLPIDLQ 112
           GLR+ DLYDP YD+D+KEALNRLPRE++DA NQ L RAMDLSMKH+YLP +LQ
Sbjct: 32  GLRYDDLYDPLYDLDIKEALNRLPREIVDARNQRLMRAMDLSMKHEYLPDNLQ 84

[Close]

BLAST of Bhi04M000709 vs. ExPASy Swiss-Prot
Match: Q9D855 (Cytochrome b-c1 complex subunit 7 OS=Mus musculus OX=10090 GN=Uqcrb PE=1 SV=3)

HSP 1 Score: 45.4 bits (106), Expect = 5.2e-04
Identity = 29/75 (38.67%), Postives = 40/75 (53.33%), Query Frame = 0


Query: 36  VSFSMALISNFVPWRLILGCVTMLGLRFDLYDPYYDI-DVKEALNRLPREVIDAGNQHLK 95
           VS S   +  F  W         LGL  D  D  ++  DVKEA+ RLP ++ +     +K
Sbjct: 7   VSASSKWLDGFRKWYYNAAGFNKLGLMRD--DTLHETEDVKEAIRRLPEDLYNDRMLRIK 66

Query: 96  RAMDLSMKHQYLPID 110
           RA+DL+M+HQ LP D
Sbjct: 67  RALDLTMRHQILPKD 79

[Close]

BLAST of Bhi04M000709 vs. ExPASy Swiss-Prot
Match: Q5RC24 (Cytochrome b-c1 complex subunit 7 OS=Pongo abelii OX=9601 GN=UQCRB PE=3 SV=3)

HSP 1 Score: 45.4 bits (106), Expect = 5.2e-04
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 69  YYDIDVKEALNRLPREVIDAGNQHLKRAMDLSMKHQYLP 108
           Y D DVKEA+ RLP  + +     +KRA+DLS+KHQ LP
Sbjct: 39  YEDEDVKEAIRRLPENLYNDRMFRIKRALDLSLKHQILP 77

[Close]

BLAST of Bhi04M000709 vs. ExPASy TrEMBL
Match: A0A6P5XQS8 (Cytochrome b-c1 complex subunit 7 OS=Durio zibethinus OX=66656 GN=LOC111285391 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.6e-18
Identity = 58/112 (51.79%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 1   MASFLQSFIVPKKKIGDSSPDRPNTFVIRVIETLIVSFSMALISNFVPWRLILGCVTMLG 60
           MASFLQSF+ PKK                     + +  M  ISN          +   G
Sbjct: 1   MASFLQSFLNPKK-------------------NWLAALHMKSISN---------RLRKYG 60

Query: 61  LRF-DLYDPYYDIDVKEALNRLPREVIDAGNQHLKRAMDLSMKHQYLPIDLQ 112
           LR+ DLYDPYYD+D+KEALNRLPRE++DA NQHLKRAMDLSMKH+YLP +LQ
Sbjct: 61  LRYDDLYDPYYDLDIKEALNRLPREIVDARNQHLKRAMDLSMKHEYLPENLQ 84

[Close]

BLAST of Bhi04M000709 vs. ExPASy TrEMBL
Match: A0A6J1ILG6 (Cytochrome b-c1 complex subunit 7 OS=Cucurbita maxima OX=3661 GN=LOC111476673 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.9e-17
Identity = 61/112 (54.46%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 1   MASFLQSFIVPKKKIGDSSPDRPNTFVIRVIETLIVSFSMALISNFVPWRLILGCVTMLG 60
           MASFLQSFI PKK          N F  + ++ L        + N+             G
Sbjct: 1   MASFLQSFIDPKK----------NWFARQHMKAL-----TQRLRNY-------------G 60

Query: 61  LRF-DLYDPYYDIDVKEALNRLPREVIDAGNQHLKRAMDLSMKHQYLPIDLQ 112
           LR+ DLYDPYYDIDVKEALNRLPRE++DA NQ LKRAMDLSMKH+YLP DLQ
Sbjct: 61  LRYDDLYDPYYDIDVKEALNRLPREIVDARNQRLKRAMDLSMKHKYLPDDLQ 84

[Close]

BLAST of Bhi04M000709 vs. ExPASy TrEMBL
Match: A0A2N9ISI5 (Cytochrome b-c1 complex subunit 7 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54985 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.9e-17
Identity = 62/112 (55.36%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 1   MASFLQSFIVPKKKIGDSSPDRPNTFVIRVIETLIVSFSMALISNFVPWRLILGCVTMLG 60
           MASFLQSF+ PKK          N F  +          M  ISN          +   G
Sbjct: 1   MASFLQSFLDPKK----------NWFAAQ---------HMKSISN---------RLRRYG 60

Query: 61  LRF-DLYDPYYDIDVKEALNRLPREVIDAGNQHLKRAMDLSMKHQYLPIDLQ 112
           LR+ DLYDPYYD+DVKEALNRLPRE+IDA NQ LKRAMDLSMKHQYLP +LQ
Sbjct: 61  LRYDDLYDPYYDLDVKEALNRLPREIIDARNQRLKRAMDLSMKHQYLPDNLQ 84

[Close]

BLAST of Bhi04M000709 vs. ExPASy TrEMBL
Match: A0A7J8W296 (Cytochrome b-c1 complex subunit 7 OS=Gossypium klotzschianum OX=34286 GN=Goklo_001848 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.9e-17
Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 60  GLRF-DLYDPYYDIDVKEALNRLPREVIDAGNQHLKRAMDLSMKHQYLPIDLQVFSYY 117
           GLR+ DLYDPYYD+D+KEALNRLPRE++DA NQ LKRAMDLSMKH+YLP DLQVF ++
Sbjct: 32  GLRYDDLYDPYYDLDIKEALNRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQVFLFF 89

[Close]

BLAST of Bhi04M000709 vs. ExPASy TrEMBL
Match: A0A6J1FFY7 (Cytochrome b-c1 complex subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111443697 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.9e-17
Identity = 61/112 (54.46%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 1   MASFLQSFIVPKKKIGDSSPDRPNTFVIRVIETLIVSFSMALISNFVPWRLILGCVTMLG 60
           MASFLQSFI PKK          N F  + ++ L        + N+             G
Sbjct: 1   MASFLQSFIDPKK----------NWFARQHMKAL-----TQRLRNY-------------G 60

Query: 61  LRF-DLYDPYYDIDVKEALNRLPREVIDAGNQHLKRAMDLSMKHQYLPIDLQ 112
           LR+ DLYDPYYDIDVKEALNRLPRE++DA NQ LKRAMDLSMKH+YLP DLQ
Sbjct: 61  LRYDDLYDPYYDIDVKEALNRLPREIVDARNQRLKRAMDLSMKHKYLPDDLQ 84

The following BLAST results are available for this feature:

BLAST of Bhi04M000709 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25450.2	6.5e-18	75.93	Cytochrome bd ubiquinol oxidase, 14kDa subunit	[more]
AT4G32470.1	8.5e-18	77.36	Cytochrome bd ubiquinol oxidase, 14kDa subunit	[more]
AT4G32470.2	8.5e-18	77.36	Cytochrome bd ubiquinol oxidase, 14kDa subunit	[more]
AT5G25450.1	1.9e-17	75.47	Cytochrome bd ubiquinol oxidase, 14kDa subunit	[more]

BLAST of Bhi04M000709 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P48502	9.2e-17	81.13	Cytochrome b-c1 complex subunit 7 OS=Solanum tuberosum OX=4113 PE=1 SV=1	[more]
Q9SUU5	1.2e-16	77.36	Cytochrome b-c1 complex subunit 7-1, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
F4JWS8	2.7e-16	75.47	Cytochrome b-c1 complex subunit 7-2, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
Q9D855	5.2e-04	38.67	Cytochrome b-c1 complex subunit 7 OS=Mus musculus OX=10090 GN=Uqcrb PE=1 SV=3	[more]
Q5RC24	5.2e-04	53.85	Cytochrome b-c1 complex subunit 7 OS=Pongo abelii OX=9601 GN=UQCRB PE=3 SV=3	[more]

BLAST of Bhi04M000709 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P5XQS8	6.6e-18	51.79	Cytochrome b-c1 complex subunit 7 OS=Durio zibethinus OX=66656 GN=LOC111285391 P...	[more]
A0A6J1ILG6	1.9e-17	54.46	Cytochrome b-c1 complex subunit 7 OS=Cucurbita maxima OX=3661 GN=LOC111476673 PE...	[more]
A0A2N9ISI5	1.9e-17	55.36	Cytochrome b-c1 complex subunit 7 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54985 ...	[more]
A0A7J8W296	1.9e-17	77.59	Cytochrome b-c1 complex subunit 7 OS=Gossypium klotzschianum OX=34286 GN=Goklo_0...	[more]
A0A6J1FFY7	1.9e-17	54.46	Cytochrome b-c1 complex subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111443697 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003197	Cytochrome b-c1 complex subunit 7	PFAM	PF02271	UCR_14kD	coord: 56..111 e-value: 4.6E-11 score: 42.5
IPR003197	Cytochrome b-c1 complex subunit 7	PANTHER	PTHR12022	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN	coord: 57..113
IPR036544	Cytochrome b-c1 complex subunit 7 superfamily	GENE3D	1.10.1090.10		coord: 35..115 e-value: 1.4E-14 score: 55.8
IPR036544	Cytochrome b-c1 complex subunit 7 superfamily	SUPERFAMILY	81524	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 54..111
None	No IPR available	PANTHER	PTHR12022:SF10	CYTOCHROME B-C1 COMPLEX SUBUNIT 7	coord: 57..113

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi04G000709	Bhi04G000709	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi04M000709.exon1	Bhi04M000709.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi04M000709	cds.Bhi04M000709	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi04M000709	Bhi04M000709-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
cellular_component	GO:0005750	mitochondrial respiratory chain complex III