Tan0022860 (gene) Snake gourd v1

Overview
NameTan0022860
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG04: 61244386 .. 61244730 (+)
RNA-Seq ExpressionTan0022860
SyntenyTan0022860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGATAAACGTTGCTGAAATTTATGGTGCAACTTCTACTTACTTGGCTCACCCAGAAGTTCTTCAACCATCGACATAACTTCCACCACACACACCTTACATAACCGCCAAGTCAATGCCCGTGCACAAACTTGTAGAACCGCTAACATCAAATCCTCTATCATGGAAAAGTGGGCATACCATAAGAATGAGTTTTGTCTTTTTTGAGAAGAAGTCACCATCTCCCTCGATGAGAGAGACTATGTTAGCATCCGACCCAGAATCTTTTGACGAACTTGCTCTATTAAGACAATTCATTTTCATGTGTTCAGACTGTCCGCATTCCCAACTGATGGGAATCTAA

mRNA sequence

ATGCCGATAAACGTTGCTGAAATTTATGGTGCAACTTCTACTTACTTGGCTCACCCAGAAAAGTCACCATCTCCCTCGATGAGAGAGACTATGTTAGCATCCGACCCAGAATCTTTTGACGAACTTGCTCTATTAAGACAATTCATTTTCATGTGTTCAGACTGTCCGCATTCCCAACTGATGGGAATCTAA

Coding sequence (CDS)

ATGCCGATAAACGTTGCTGAAATTTATGGTGCAACTTCTACTTACTTGGCTCACCCAGAAAAGTCACCATCTCCCTCGATGAGAGAGACTATGTTAGCATCCGACCCAGAATCTTTTGACGAACTTGCTCTATTAAGACAATTCATTTTCATGTGTTCAGACTGTCCGCATTCCCAACTGATGGGAATCTAA

Protein sequence

MPINVAEIYGATSTYLAHPEKSPSPSMRETMLASDPESFDELALLRQFIFMCSDCPHSQLMGI
Homology
[Close]
BLAST of Tan0022860 vs. NCBI nr
Match: KGN65128.1 (hypothetical protein Csa_023501 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 5.8e-04
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 1  MPINVAEIYGATSTYLAHPE------KSPSPSMRETMLASDPESFDELALLRQFIFMCSD 59
          MP+N  +IYG T T+L H +      KS S  MR+T    D ESFDELA+    IFMCS+
Sbjct: 1  MPLNNVDIYGTTFTHLTHLKVLQSLTKSSSLFMRKTPSTYDQESFDELAI----IFMCSN 60

[Close]
BLAST of Tan0022860 vs. ExPASy TrEMBL
Match: A0A0A0LTM4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G230510 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.8e-04
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 1  MPINVAEIYGATSTYLAHPE------KSPSPSMRETMLASDPESFDELALLRQFIFMCSD 59
          MP+N  +IYG T T+L H +      KS S  MR+T    D ESFDELA+    IFMCS+
Sbjct: 1  MPLNNVDIYGTTFTHLTHLKVLQSLTKSSSLFMRKTPSTYDQESFDELAI----IFMCSN 60

The following BLAST results are available for this feature:
BLAST of Tan0022860 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0022860 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65128.15.8e-0450.00hypothetical protein Csa_023501 [Cucumis sativus][more]
BLAST of Tan0022860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTM42.8e-0450.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G230510 PE=4 SV=1[more]
BLAST of Tan0022860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0022860.1Tan0022860.1mRNA