Tan0022831 (gene) Snake gourd v1

Overview


Name	Tan0022831
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	U1 small nuclear ribonucleoprotein 70 kDa
Location	LG08: 1805353 .. 1809407 (-)
RNA-Seq Expression	Tan0022831
Synteny	Tan0022831

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACATTGGGAAGGGAGTACGACAAGTGTTCTTCGCGACCTTCTTCTTTCTCCTCCGAGCTCGGATTTTCGCCGTAGACATGACGGTGGACGACGATAGCTCGATTTACGTCGGCGGACTTCCTTACGACGCCACCGAGGATAGTTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTCAAGGTCAATTCCTCTCACTAACCAGATTGCCTTCTCCCCTTTCCCTCCTTCGATTTTTTTATAAGAATTATGAAGCACTTTAGGTGTTTCCGATGGATTATTTGATTGTTTGGATATAAGTTTGTGATTAGCTTTTTCAATTTACAAAGCTACTTGAAGTCTAGAGATTAGTTTGAACTCAATTTTGTAGCTTGAGACTTTTTTTTATAAGGATTTTAGACGTGGGTTGTGGGTATCTTAGAGAATGGAGCATGCCCACTGAAGAATGTATCATTGGTTTGTACTTGGTTTGAATTACTAGACATGGTGGAAGAAGCTGAATTCGTTGTGAAGATTCTTCGCTATTGTGGAGAATTTGTGTCGTTGGTTTTGTTATGTTTCACTTGAATGCTTCCATGATATTTGTTTGCTACAATCACGCTTGTTGAACTTATTATGTGTTTGAATGGCTCTGTTACATGCGGTTTCCATATAGAATGTGATTGTAGTTTAACACTTTGATTTTTGTCTTCAGATTATTAATGATCGTAGTACTAAGGGAAAGTGTTATGGCTTTGTTACCTTTACAAACCCTCGATCTGCTGTTGATGCCATCAAAGATATGGATGGAAGGGTATGTTCATTTATAGCTGGAATACAAATCTTTAAGTGTTGGTTGTTTATATATTTTCCATTATGTTTTTGAGTCTTGACTCCTGACAATTTAAGGCTTTGAATTAGACTATTGAAGGGCGGGTTGTCAGAGTTAATGGAGTGAAGACTAGAGGTGGTGGAAGGTTTGGTAGAGAAAATAATCGGTTTGATGTAGAGAGGGATGCCAGTTGGGAAAGGGATAGAGATCGAGGGAGGGATTATGATCATGACAGATATCGTCATAGAAGTAGAAATAACGACTGGTCTAGAGACCGTGATCGGTCTCGAGAACGTGATTTGGACAAGGAAAGAGTATATGAGCATCCACAAGATCGTGATCTACCCAAGGATAAATTATTGGATAGGGATCCAGAGTTGGAAAAAACTTCAAAGGATAATGAGAAGGTACACGACTTGAACCACGATCAGGATTGGGAAAAAGATCATGATGCAGATTGGAGCGGAGGCCGAGGCATTGATAACCCTGATGATTACGATAAAAGCCTTGACAATGATAGAGATACACTGTCAAGGAGAGATAACGGGTGAGTCTGTCTTAGAACTTGTTGAGATCAATGTAAAATCATTTTAGTATAAGTTTTCTGTTTGTGTAGGTTTGGTTAGTTATAACAACTAATCTCATCTGTAATGTAATATTGAAAATTTTACATTCTTGACAATTAATTGAGAATGAATGCTTGCTCAGCCGTGAATCCTATGTTTCTAGATGTTTGATAGTTTCGAACTGGGCTGTTAGTGATTCCAGAAATTTTCTAGAGATCTTTTAAATTACTTCATTCTTTCATTTGTTGTAATTTCCTTCCATAATATGCATTCATTGAGTGTTATATTAAGGACACTGGAAAGATGAAGAAGACGATGACTAGATAGCAGTACATGCATGCTAAAAACAATGGATCTGCTGTTACAGCTTTCATGGAGATGAATTGAATAGTACATTTTCTGCAGGGATTTTTTAGAAAATTTTCCGCATAATTCTTAGCTAATTTTGATGTTTATGTAGGTTTGTGAAATTTTAAACCCGTGTTCAGTTTTTCTTTTCTCCAAATGTACATGCCATTTCCCCATTACTTTTATAATTTTATCATATAATCCTTTAATGAAATGAAGAGGAAAAATTGCGCATGTTCTTCCTCTTGATGTACTTCTGGGTCATTTAGTAGCATTCAGATCTTGCCATGTCTTCCCTCCTGTTTCATAGAAAGGATGAAGAAAGAGGAATAACTTTTTGTCCATGATTATTGATTATGTGATTGCTATTATGACTTCTCTTTTCAGTCTTGCAATTGGAGATCGAACTGTTCGGGATCTTTCATCAGATTCTAGTGAGGATTATATTCATGAGGTATGTTTACCATTTTTCACCTTTTAGATTTTCTCTATTGGTTACAGCTGATTAATAAGCATCTAATACAACTTTTGCTCCTATTATTTGCATTATAGATGAAGGAACAACTGGAGATATCAACCGAAAGATTTGAAGAACTTAGAAAAGAGGTCTGTTTCTATGTACAGTTAAAACCATGGACTAAGGAGTGCCTTGATGATTCTTTTTTCTTCACCAAAGAGAGAGATGATCACTGGAATGGTTAACAAAAATTTTCAGAAAAATTCCAATGTGGATTGGCATAATTTAATACCCTCGGTCTGAAATGTGCTTCAGAATATAGTACATATAGGTCCACAAACACATATGCCGCCCATGCTCACAAAGAAACTTAGCCAACATATTAAATTCAACTCTTAGTTGATGTATCCATTTGAATCTAACTATAGTTTTGTGCAATGTTCTGTAACTTGTTTTGCATCATTCTTTTAGATATCATGATTGCACTTGAATTTTGAGCCTTAGAGGTTTTCTTTCCAGATTTCTCAAATAGAGGAGAGGACAGGAGAGAAAGGAAAACACGTAATTGAGTTGCAAAAGAAAGCCAAGGTATAAGATAATTTTATAACTTTTAATTATGACACTTTTGTTGTGTTCTCATTGTTACCCTGTCCCTTGTGCTTTATAACTAATATCTAGTTTATGTCCAACTTACTAATGTTGGATGCAGAAACTGGAAGAAGCATTGATCAGCGCAAAGAAGCGCTCTTCATTCCGTCAGATGCAGCTGACCAAGGTAACTGCCAGTTTCATATATTACATTGTTTAGAAACTATAATGGCAATGATAATTCTTGTTTTGTAATGCAAATAACTGCAGCTCCATAAAAGCTTTCTGCTAGTGAAGGATTATTCTGAGAGACTTAAAACCAGTGAACAAGATCTTCAGGTTTGTGTTTCAACATTAAAACACCTTAATTCTCTTCTCTCTTCTTCTCGCATATATATTAAGAGTTAACACCTAATTTAATGGAAAAAAATGTACTTGTGGATAAAATTGTTGGACAGCACTTAATTAGAACAATTTTGCTATGTATCAATATTTTGTAGGGAATCTGACATATGACATACATATGCTATGATCATAAATTGAGGAAGCATATAATTTTTTTTTTTATCTATACCAATTATCCCAGGTTAATCGCATATATACGTGTGCGTGCGCATAAACATTTTTTTAGATTTCCCTTCGTGCTATTGTCTTACATTTTACTGTCTCTTTATCCAATTACTCTTCTCCAAAGATGCTTGTAATTGATCCTTTTGACATTGCACATGAATGAATAAAACGTTATGTGACCATTTGCTAACAGGTTTTGGTTGAATCAACTGCAATAGAGAGTGATGCTGGCTGATGAAGTATGAAGTTCTAGGCAGTTGAAATTCATGTCATAAGCTGAAAAGGCTGCATCCTGCTATTTTGTTGGCATGGTATTCATGGTCTTCTGTTGATACTGATGACAAGTTGTGATGTAGAGTTCATTTGTAACCAAATTTGTCCCAAGACTAAGCTGTCCATTTATTTCATGGTATGTTCACAATCAACTAAGCTCATGGTTTTACTCGGCTAGCATCTTCAGAGGTTCATTGCTTTACCATCGTCAAGTTATGTATTTAAAGATATACCGAAAATTAATTCTAACATCCAAGTATTTTTCCAGCTTTCCTGAAGTTCCTTTTCATGAATTTGTACAAAAATTTTAAATTTTAGGTTGTAATTTTTTTTTTCCAATTGTTTGATGTTATTACATTTGCCTGCCAAGATAACTCATAAGATACTAATTCTAAGTAGGTGACCACTATAACTTAATAACTCATTCCCATTTCCT

mRNA sequence

AACATTGGGAAGGGAGTACGACAAGTGTTCTTCGCGACCTTCTTCTTTCTCCTCCGAGCTCGGATTTTCGCCGTAGACATGACGGTGGACGACGATAGCTCGATTTACGTCGGCGGACTTCCTTACGACGCCACCGAGGATAGTTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTCAAGATTATTAATGATCGTAGTACTAAGGGAAAGTGTTATGGCTTTGTTACCTTTACAAACCCTCGATCTGCTGTTGATGCCATCAAAGATATGGATGGAAGGACTATTGAAGGGCGGGTTGTCAGAGTTAATGGAGTGAAGACTAGAGGTGGTGGAAGGTTTGGTAGAGAAAATAATCGGTTTGATGTAGAGAGGGATGCCAGTTGGGAAAGGGATAGAGATCGAGGGAGGGATTATGATCATGACAGATATCGTCATAGAAGTAGAAATAACGACTGGTCTAGAGACCGTGATCGGTCTCGAGAACGTGATTTGGACAAGGAAAGAGTATATGAGCATCCACAAGATCGTGATCTACCCAAGGATAAATTATTGGATAGGGATCCAGAGTTGGAAAAAACTTCAAAGGATAATGAGAAGGTACACGACTTGAACCACGATCAGGATTGGGAAAAAGATCATGATGCAGATTGGAGCGGAGGCCGAGGCATTGATAACCCTGATGATTACGATAAAAGCCTTGACAATGATAGAGATACACTGTCAAGGAGAGATAACGGTCTTGCAATTGGAGATCGAACTGTTCGGGATCTTTCATCAGATTCTAGTGAGGATTATATTCATGAGATGAAGGAACAACTGGAGATATCAACCGAAAGATTTGAAGAACTTAGAAAAGAGATTTCTCAAATAGAGGAGAGGACAGGAGAGAAAGGAAAACACGTAATTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGAAGCATTGATCAGCGCAAAGAAGCGCTCTTCATTCCGTCAGATGCAGCTGACCAAGCTCCATAAAAGCTTTCTGCTAGTGAAGGATTATTCTGAGAGACTTAAAACCAGTGAACAAGATCTTCAGGTTTTGGTTGAATCAACTGCAATAGAGAGTGATGCTGGCTGATGAAGTATGAAGTTCTAGGCAGTTGAAATTCATGTCATAAGCTGAAAAGGCTGCATCCTGCTATTTTGTTGGCATGGTATTCATGGTCTTCTGTTGATACTGATGACAAGTTGTGATGTAGAGTTCATTTGTAACCAAATTTGTCCCAAGACTAAGCTGTCCATTTATTTCATGGTATGTTCACAATCAACTAAGCTCATGGTTTTACTCGGCTAGCATCTTCAGAGGTTCATTGCTTTACCATCGTCAAGTTATGTATTTAAAGATATACCGAAAATTAATTCTAACATCCAAGTATTTTTCCAGCTTTCCTGAAGTTCCTTTTCATGAATTTGTACAAAAATTTTAAATTTTAGGTTGTAATTTTTTTTTTCCAATTGTTTGATGTTATTACATTTGCCTGCCAAGATAACTCATAAGATACTAATTCTAAGTAGGTGACCACTATAACTTAATAACTCATTCCCATTTCCT

Coding sequence (CDS)

ATGACGGTGGACGACGATAGCTCGATTTACGTCGGCGGACTTCCTTACGACGCCACCGAGGATAGTTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTCAAGATTATTAATGATCGTAGTACTAAGGGAAAGTGTTATGGCTTTGTTACCTTTACAAACCCTCGATCTGCTGTTGATGCCATCAAAGATATGGATGGAAGGACTATTGAAGGGCGGGTTGTCAGAGTTAATGGAGTGAAGACTAGAGGTGGTGGAAGGTTTGGTAGAGAAAATAATCGGTTTGATGTAGAGAGGGATGCCAGTTGGGAAAGGGATAGAGATCGAGGGAGGGATTATGATCATGACAGATATCGTCATAGAAGTAGAAATAACGACTGGTCTAGAGACCGTGATCGGTCTCGAGAACGTGATTTGGACAAGGAAAGAGTATATGAGCATCCACAAGATCGTGATCTACCCAAGGATAAATTATTGGATAGGGATCCAGAGTTGGAAAAAACTTCAAAGGATAATGAGAAGGTACACGACTTGAACCACGATCAGGATTGGGAAAAAGATCATGATGCAGATTGGAGCGGAGGCCGAGGCATTGATAACCCTGATGATTACGATAAAAGCCTTGACAATGATAGAGATACACTGTCAAGGAGAGATAACGGTCTTGCAATTGGAGATCGAACTGTTCGGGATCTTTCATCAGATTCTAGTGAGGATTATATTCATGAGATGAAGGAACAACTGGAGATATCAACCGAAAGATTTGAAGAACTTAGAAAAGAGATTTCTCAAATAGAGGAGAGGACAGGAGAGAAAGGAAAACACGTAATTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGAAGCATTGATCAGCGCAAAGAAGCGCTCTTCATTCCGTCAGATGCAGCTGACCAAGCTCCATAAAAGCTTTCTGCTAGTGAAGGATTATTCTGAGAGACTTAAAACCAGTGAACAAGATCTTCAGGTTTTGGTTGAATCAACTGCAATAGAGAGTGATGCTGGCTGA

Protein sequence

MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTKGKCYGFVTFTNPRSAVDAIKDMDGRTIEGRVVRVNGVKTRGGGRFGRENNRFDVERDASWERDRDRGRDYDHDRYRHRSRNNDWSRDRDRSRERDLDKERVYEHPQDRDLPKDKLLDRDPELEKTSKDNEKVHDLNHDQDWEKDHDADWSGGRGIDNPDDYDKSLDNDRDTLSRRDNGLAIGDRTVRDLSSDSSEDYIHEMKEQLEISTERFEELRKEISQIEERTGEKGKHVIELQKKAKKLEEALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQDLQVLVESTAIESDAG

Homology

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BLAST of Tan0022831 vs. ExPASy Swiss-Prot
Match: Q18409 (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans OX=6239 GN=rsp-6 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.6e-13
Identity = 64/170 (37.65%), Postives = 87/170 (51.18%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTKGKCYGFVTFTNPRSAVDAIK 65
           D+ +YVGGLP DAT   L  IFD +G +  V +    + +   + FV + + R A DA++
Sbjct: 2   DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWV----ARRPPGFAFVEYDDVRDAEDAVR 61

Query: 66  DMDGRTIEG---RVVRVNGVKTRGGGR---------FGRENNRFDVERDASWERDRDRGR 125
            +DG  I G   RV    G +  GGGR          GR+ + +  +R  S  R RDRGR
Sbjct: 62  ALDGSRICGVRARVELSTGQRRGGGGRGGGFGGRGGGGRDRSPYRGDRGRSRSRSRDRGR 121

Query: 126 DYDHDRYRHRSRNNDWSRDRDRSRERDLDKERVYEHPQDRDLPKDKLLDR 164
           D   DR R RSR+    R R+RSRER+  + R    PQ+RD    K   R
Sbjct: 122 DRSRDRSRDRSRDRSRDRSRERSRERERTRSR-SRSPQERDRSHSKSRSR 166

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BLAST of Tan0022831 vs. ExPASy Swiss-Prot
Match: O22703 (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-12
Identity = 66/179 (36.87%), Postives = 89/179 (49.72%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-KGKCYGFVTFTNPRSAVDAI 65
           +S I+VGGL +D TE  L   FD YG +   +I+  R T + + +GF+TFT+ R A DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  KDMDGRTIEGRVVRVNGVKTRGGGR---------------FGRENNRFDVERDASWERDR 125
           K M GR +  +V+ VN  + + GG                 G E+  F   R   W RD 
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130

Query: 126 DRGRDYDHDRYR----HRSRNNDWSRDRDRSRERDLDKERVYEHPQDRDLPKDKLLDRD 165
               D D +R+R     RSR  D    RDR  +RDL++ER  E   DR +  D   DRD
Sbjct: 131 PSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDRYM--DGRRDRD 186

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BLAST of Tan0022831 vs. ExPASy Swiss-Prot
Match: Q66II8 (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-09
Identity = 90/328 (27.44%), Postives = 146/328 (44.51%), Query Frame = 0


Query: 4   DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKII-NDRSTKGKCYGFVTFTNPRSAVD 63
           D   +++V  + YD TE  LRR F++YG +  + ++ N RS K + Y F+ + + R    
Sbjct: 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHS 159

Query: 64  AIKDMDGRTIEGRVVRVNGVKTR----------GGGRFGRENNRFDV------------- 123
           A K  DG+ I+GR V V+  + R          GGG  G      DV             
Sbjct: 160 AYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRY 219

Query: 124 -ERDASWERDRD---RGRDYDHDRYRHRSRNNDWSR--------DRDRSRERDLDKERVY 183
            ERD   ER+RD   R R+ D +R R RSR+ +  R        +R RSRER  DK++  
Sbjct: 220 DERDRDRERERDRRERSRERDKERERRRSRSRERRRRSRSREKEERKRSRERSRDKDK-- 279

Query: 184 EHPQDRDLPKDKLLDRDPELEKTSKDNEKVHDLNHDQDWEKD-------------HDADW 243
              +D+D  K+K  D+D + ++ S+  E+  + + D++ ++D              D   
Sbjct: 280 --DKDKDKDKEKDKDKDRDRKRRSRSRERKRERDRDREKKEDRVEGEVPESVDVPQDDAQ 339

Query: 244 SGGRGID------NPDDYDKSLDNDRDTLSRRDNGLAIGDRTVRDLSSDSSEDYIHEMKE 277
           +G  GID       P++ ++  D +RD    RD      DR  R    D   D   E   
Sbjct: 340 TGDLGIDGIELKQEPEEKNRDRDRERDREKDRDKD-RDRDRDRRRSHRDRERDKDRERDR 399

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BLAST of Tan0022831 vs. ExPASy Swiss-Prot
Match: P09406 (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis OX=8355 GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.8e-08
Identity = 62/211 (29.38%), Postives = 103/211 (48.82%), Query Frame = 0


Query: 4   DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTKG----KCYGFVTFTNPRS 63
           D   +++V  + YD TE  LRR F++YG +  + I+ ++ ++G    + Y F+ + + R 
Sbjct: 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERD 159

Query: 64  AVDAIKDMDGRTIEGRVVRVNGVKTR----------GGGRFGRENNRFDV------ERDA 123
              A K  DG+ I+GR V V+  + R          GGG  G      DV        D 
Sbjct: 160 MHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDT 219

Query: 124 SWERDRDRGRDYDHDRYRHRSRNNDWSRDRDRSRERDLDKERVYEHPQDRDLPKDKLLDR 183
           S   +RDR R+ D  R R R R  +  R+R RSR R+  ++      ++R   ++K  D+
Sbjct: 220 SRYDERDRERERDR-RERSREREKE-PRERRRSRSRERRRKSRSREKEERKRTREKSKDK 279

Query: 184 DPELEKTSKDNE-KVHDLNHDQDWEKDHDAD 194
           D E +K +KD + K    + ++  E+D D +
Sbjct: 280 DKEKDKDNKDRDRKRRSRSRERKRERDRDRE 308

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BLAST of Tan0022831 vs. ExPASy Swiss-Prot
Match: Q54PM6 (Uncharacterized protein DDB_G0284459 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0284459 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 8.6e-04
Identity = 64/226 (28.32%), Postives = 112/226 (49.56%), Query Frame = 0


Query: 64  IKDMDGRTIEGRVVRVNGVKTRGGGRFGRENNRFDVERDASWERDRDRGRDYDHDRYRHR 123
           I+   G+ +     R N  +T  G    R+ +  +  RD   +RDRDR RD D DR R R
Sbjct: 762 IEKETGKDLGSSRDRDNSSRTTNGRDSDRDRDSREGSRDRDRDRDRDRDRDRDRDRDRGR 821

Query: 124 SRNN----DWSRDRDRSRERDLDKERVYEHPQDRDLPKDKLLDRDPELEKTSKDNEKVHD 183
            R N    +  RDRDRS   D D++R  +  +DRD  +D+  DRD + ++  +D ++  D
Sbjct: 822 DRGNGDRGEGDRDRDRSGRSDRDRDRDRDRDRDRDRDRDRGNDRDRDRDR-DRDRDRGRD 881

Query: 184 LNHDQDWEKDHDADWSGGRGIDNPDDYDKSLDNDRDTLSRRDNGLAIGDRTVRDLSSDSS 243
              D+D ++  D++ +     +N ++ + + +N+ +  +++DN     +    +   D +
Sbjct: 882 RGSDRDRDR-KDSNSNNNSNNNNNNNNNNNNNNNNNNNNKKDNNNNNNNNNNNNNKRDGN 941

Query: 244 EDYIHEMKEQLEISTERFEEL-RKEISQIEERTGEKGKHVIELQKK 285
           +D      E     T++ E+L R +I QI+E   +  K   ELQ K
Sbjct: 942 KD--GSSSELTPKKTKQEEKLIRSQIDQIKEDAKDLKKLAKELQSK 983

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BLAST of Tan0022831 vs. NCBI nr
Match: XP_022143227.1 (U1 small nuclear ribonucleoprotein 70 kDa [Momordica charantia])

HSP 1 Score: 570.5 bits (1469), Expect = 1.0e-158
Identity = 304/344 (88.37%), Postives = 322/344 (93.60%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTKGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST+GKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  VDAIKDMDGRTIEGRVVRVNGVKTRGGGRFGRENNRFDVERDASWERDRDRGRDYDHDRY 120
           VDAIKDMDGRTI+GRVVRVNGVK+RGGGRFGRE  R++ ERDA WE+DRDRGRDYDHDRY
Sbjct: 61  VDAIKDMDGRTIDGRVVRVNGVKSRGGGRFGREGIRYN-ERDADWEKDRDRGRDYDHDRY 120

Query: 121 RHRSRNNDWSRDRDRSRERDLDKERVYEHPQDRDLPKDKLLDRDPELEKTSKDNEKVHDL 180
            HR RNNDWSR+RDRSRE DLDKER YEHPQDRDLPKDKLLDRDPELEKTSKDNE V DL
Sbjct: 121 HHRGRNNDWSRERDRSREHDLDKERGYEHPQDRDLPKDKLLDRDPELEKTSKDNELVLDL 180

Query: 181 NHDQDWEKDHDADWSGGRGIDNPDDYDKSLDNDRDTLSRRDNGLAIGDRTVRDLSSDSSE 240
           N DQDWEKDHDADWSGGR IDN DDYDKSLDNDRD  SRRD+GL I  RT R++SSDSS+
Sbjct: 181 NRDQDWEKDHDADWSGGRNIDNTDDYDKSLDNDRDLPSRRDSGLTIEGRTGREVSSDSSD 240

Query: 241 DYIHEMKEQLEISTERFEELRKEISQIEERTGEKGKHVIELQKKAKKLEEALISAKKRSS 300
           DYIHE+KEQLEISTERFEELRKEIS+IEERTGEKGK V+ELQKKAKKLE+ALISAKKR+S
Sbjct: 241 DYIHELKEQLEISTERFEELRKEISRIEERTGEKGKLVVELQKKAKKLEDALISAKKRTS 300

Query: 301 FRQMQLTKLHKSFLLVKDYSERLKTSEQDLQVLVESTAIESDAG 345
           FRQMQLTKLHKSFLLVKDYSERLK+SEQ+LQ LVESTAIESD G
Sbjct: 301 FRQMQLTKLHKSFLLVKDYSERLKSSEQELQALVESTAIESDVG 343

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BLAST of Tan0022831 vs. NCBI nr
Match: XP_038889756.1 (serine/threonine-protein kinase prpf4B [Benincasa hispida])

HSP 1 Score: 568.5 bits (1464), Expect = 3.8e-158
Identity = 305/346 (88.15%), Postives = 319/346 (92.20%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTKGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST+GKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  VDAIKDMDGRTIEGRVVRVNGVKTRGGGRFGRENNRFDVERDASWERDRDRGRDYDHDRY 120
           +DAIKDMDGR+IEGRVVRVNGVK+R GGRFGRE NRFDVERD SWERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRSIEGRVVRVNGVKSRSGGRFGREGNRFDVERDVSWERDRDRGRDYDHDRY 120

Query: 121 RHRSRNNDWSRDRDRSRERDLDKERVYEHPQDRDLPKDKLLDRDPELEKTSKDNEKVHD- 180
           RHR RNNDWSRDRDRSRE DLDKER YEH QD D PKDKLLDRDPELEK+SKDNEKVHD 
Sbjct: 121 RHRGRNNDWSRDRDRSREHDLDKERGYEHSQDHDPPKDKLLDRDPELEKSSKDNEKVHDL 180

Query: 181 -LNHDQDWEKDHDADWSGGRGIDNPDDYDKSLDNDRDTLSRRDNGLAIGDRTVRDLSSDS 240
            LNHDQD EK+H ADW GG GIDN DDY+KSLDNDR+ LSRRDNGL    RT RDLSSDS
Sbjct: 181 KLNHDQDSEKNHGADWIGGGGIDNADDYEKSLDNDRNQLSRRDNGLTSEGRTARDLSSDS 240

Query: 241 SEDYIHEMKEQLEISTERFEELRKEISQIEERTGEKGKHVIELQKKAKKLEEALISAKKR 300
           S+DYIHE+KEQLEISTER EELRKE+SQIEER+GEK K VIELQKKAKKLE+ALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVIELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKTSEQDLQVLVESTAIESDAG 345
           SSFRQMQLTKLHKSFLLVKDYSERLKTSEQ+LQ LVESTAIESD G
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG 346

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BLAST of Tan0022831 vs. NCBI nr
Match: XP_022946346.1 (U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita moschata] >KAG6599420.1 Cold-inducible RNA-binding protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030410.1 Cold-inducible RNA-binding protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 567.0 bits (1460), Expect = 1.1e-157
Identity = 303/346 (87.57%), Postives = 320/346 (92.49%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTKGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST+GKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  VDAIKDMDGRTIEGRVVRVNGVKTRGGGRFGRENNRFDVERDASWERDRDRGRDYDHDRY 120
           +DAIKDMDGRTIEGRVVRVNGV TRGGGRFGRE+NRFDVERD +WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RHRSRNNDWSRDRDRSRERDLDKERVYEHPQDRDLPKDKLLDRDPELEKTSKDNEKVHD- 180
           R R RNNDWSR+RDRSRE DLDKERVYEH QDRDLPKD LLDR+PELEK  K NE+  D 
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 -LNHDQDWEKDHDADWSGGRGIDNPDDYDKSLDNDRDTLSRRDNGLAIGDRTVRDLSSDS 240
            L+H QDWEKDHDADW+GG GIDN DDYDKSL +DRD LSRRDNGLAI  RT R+LSSDS
Sbjct: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SEDYIHEMKEQLEISTERFEELRKEISQIEERTGEKGKHVIELQKKAKKLEEALISAKKR 300
           S+DYIHE+KEQLEISTERFEELRKEISQIEERTGEKGK V+ELQKKAKKLE+ALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKTSEQDLQVLVESTAIESDAG 345
           SSFRQMQLTKLHKSFLLVKDYSERLK SEQ+LQ LVESTAIESD G
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of Tan0022831 vs. NCBI nr
Match: XP_023547216.1 (U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo])

HSP 1 Score: 565.5 bits (1456), Expect = 3.2e-157
Identity = 302/346 (87.28%), Postives = 319/346 (92.20%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTKGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST+GKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  VDAIKDMDGRTIEGRVVRVNGVKTRGGGRFGRENNRFDVERDASWERDRDRGRDYDHDRY 120
           +DAIKDMDGRTIEGRVVRVNGV TRGGGRFGRE+NRFDVERD +WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RHRSRNNDWSRDRDRSRERDLDKERVYEHPQDRDLPKDKLLDRDPELEKTSKDNEKVHD- 180
           R R RNNDWSR+RDRSRE DLDKER YEH QDRDLPKD LLDR+PELEK  K NE+  D 
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERAYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 -LNHDQDWEKDHDADWSGGRGIDNPDDYDKSLDNDRDTLSRRDNGLAIGDRTVRDLSSDS 240
            L+H QDWEKDHDADW+GG GIDN DDYDKSL +DRD LSRRDNGLAI  RT R+LSSDS
Sbjct: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SEDYIHEMKEQLEISTERFEELRKEISQIEERTGEKGKHVIELQKKAKKLEEALISAKKR 300
           S+DYIHE+KEQLEISTERFEELRKEISQIEERTGEKGK V+ELQKKAKKLE+ALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKTSEQDLQVLVESTAIESDAG 345
           SSFRQMQLTKLHKSFLLVKDYSERLK SEQ+LQ LVESTAIESD G
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of Tan0022831 vs. NCBI nr
Match: XP_022999196.1 (U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita maxima])

HSP 1 Score: 565.5 bits (1456), Expect = 3.2e-157
Identity = 302/346 (87.28%), Postives = 319/346 (92.20%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTKGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST+GKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  VDAIKDMDGRTIEGRVVRVNGVKTRGGGRFGRENNRFDVERDASWERDRDRGRDYDHDRY 120
           +DAIKDMDGRTIEGRVVRVNGV TRGGGRFGRE+NRFDVERD +WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RHRSRNNDWSRDRDRSRERDLDKERVYEHPQDRDLPKDKLLDRDPELEKTSKDNEKVHD- 180
           R R RNNDWSR+RDRSRE DLDKERVYEH QDRDLPKD LLDR+PELEK  K NE+  D 
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 -LNHDQDWEKDHDADWSGGRGIDNPDDYDKSLDNDRDTLSRRDNGLAIGDRTVRDLSSDS 240
            L+H QDWEKDHD DW+GG GIDN DDYDKSL +DRD LSRRDNGLAI  RT R+LSSDS
Sbjct: 181 KLSHGQDWEKDHDGDWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SEDYIHEMKEQLEISTERFEELRKEISQIEERTGEKGKHVIELQKKAKKLEEALISAKKR 300
           S+DYIHE+KEQLEISTERFEELRKEISQIEERTGEKGK V+ELQKKAKKLE+ALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKTSEQDLQVLVESTAIESDAG 345
           SSFRQMQLTKLHKSFLLVKDYSERLK SEQ+LQ LVESTAIESD G
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of Tan0022831 vs. ExPASy TrEMBL
Match: A0A6J1CQ67 (U1 small nuclear ribonucleoprotein 70 kDa OS=Momordica charantia OX=3673 GN=LOC111013144 PE=4 SV=1)

HSP 1 Score: 570.5 bits (1469), Expect = 4.8e-159
Identity = 304/344 (88.37%), Postives = 322/344 (93.60%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTKGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST+GKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  VDAIKDMDGRTIEGRVVRVNGVKTRGGGRFGRENNRFDVERDASWERDRDRGRDYDHDRY 120
           VDAIKDMDGRTI+GRVVRVNGVK+RGGGRFGRE  R++ ERDA WE+DRDRGRDYDHDRY
Sbjct: 61  VDAIKDMDGRTIDGRVVRVNGVKSRGGGRFGREGIRYN-ERDADWEKDRDRGRDYDHDRY 120

Query: 121 RHRSRNNDWSRDRDRSRERDLDKERVYEHPQDRDLPKDKLLDRDPELEKTSKDNEKVHDL 180
            HR RNNDWSR+RDRSRE DLDKER YEHPQDRDLPKDKLLDRDPELEKTSKDNE V DL
Sbjct: 121 HHRGRNNDWSRERDRSREHDLDKERGYEHPQDRDLPKDKLLDRDPELEKTSKDNELVLDL 180

Query: 181 NHDQDWEKDHDADWSGGRGIDNPDDYDKSLDNDRDTLSRRDNGLAIGDRTVRDLSSDSSE 240
           N DQDWEKDHDADWSGGR IDN DDYDKSLDNDRD  SRRD+GL I  RT R++SSDSS+
Sbjct: 181 NRDQDWEKDHDADWSGGRNIDNTDDYDKSLDNDRDLPSRRDSGLTIEGRTGREVSSDSSD 240

Query: 241 DYIHEMKEQLEISTERFEELRKEISQIEERTGEKGKHVIELQKKAKKLEEALISAKKRSS 300
           DYIHE+KEQLEISTERFEELRKEIS+IEERTGEKGK V+ELQKKAKKLE+ALISAKKR+S
Sbjct: 241 DYIHELKEQLEISTERFEELRKEISRIEERTGEKGKLVVELQKKAKKLEDALISAKKRTS 300

Query: 301 FRQMQLTKLHKSFLLVKDYSERLKTSEQDLQVLVESTAIESDAG 345
           FRQMQLTKLHKSFLLVKDYSERLK+SEQ+LQ LVESTAIESD G
Sbjct: 301 FRQMQLTKLHKSFLLVKDYSERLKSSEQELQALVESTAIESDVG 343

[Close]

BLAST of Tan0022831 vs. ExPASy TrEMBL
Match: A0A6J1G3E0 (U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita moschata OX=3662 GN=LOC111450445 PE=4 SV=1)

HSP 1 Score: 567.0 bits (1460), Expect = 5.4e-158
Identity = 303/346 (87.57%), Postives = 320/346 (92.49%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTKGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST+GKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  VDAIKDMDGRTIEGRVVRVNGVKTRGGGRFGRENNRFDVERDASWERDRDRGRDYDHDRY 120
           +DAIKDMDGRTIEGRVVRVNGV TRGGGRFGRE+NRFDVERD +WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RHRSRNNDWSRDRDRSRERDLDKERVYEHPQDRDLPKDKLLDRDPELEKTSKDNEKVHD- 180
           R R RNNDWSR+RDRSRE DLDKERVYEH QDRDLPKD LLDR+PELEK  K NE+  D 
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 -LNHDQDWEKDHDADWSGGRGIDNPDDYDKSLDNDRDTLSRRDNGLAIGDRTVRDLSSDS 240
            L+H QDWEKDHDADW+GG GIDN DDYDKSL +DRD LSRRDNGLAI  RT R+LSSDS
Sbjct: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SEDYIHEMKEQLEISTERFEELRKEISQIEERTGEKGKHVIELQKKAKKLEEALISAKKR 300
           S+DYIHE+KEQLEISTERFEELRKEISQIEERTGEKGK V+ELQKKAKKLE+ALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKTSEQDLQVLVESTAIESDAG 345
           SSFRQMQLTKLHKSFLLVKDYSERLK SEQ+LQ LVESTAIESD G
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of Tan0022831 vs. ExPASy TrEMBL
Match: A0A6J1KCE4 (U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita maxima OX=3661 GN=LOC111493652 PE=4 SV=1)

HSP 1 Score: 565.5 bits (1456), Expect = 1.6e-157
Identity = 302/346 (87.28%), Postives = 319/346 (92.20%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTKGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST+GKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  VDAIKDMDGRTIEGRVVRVNGVKTRGGGRFGRENNRFDVERDASWERDRDRGRDYDHDRY 120
           +DAIKDMDGRTIEGRVVRVNGV TRGGGRFGRE+NRFDVERD +WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RHRSRNNDWSRDRDRSRERDLDKERVYEHPQDRDLPKDKLLDRDPELEKTSKDNEKVHD- 180
           R R RNNDWSR+RDRSRE DLDKERVYEH QDRDLPKD LLDR+PELEK  K NE+  D 
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 -LNHDQDWEKDHDADWSGGRGIDNPDDYDKSLDNDRDTLSRRDNGLAIGDRTVRDLSSDS 240
            L+H QDWEKDHD DW+GG GIDN DDYDKSL +DRD LSRRDNGLAI  RT R+LSSDS
Sbjct: 181 KLSHGQDWEKDHDGDWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SEDYIHEMKEQLEISTERFEELRKEISQIEERTGEKGKHVIELQKKAKKLEEALISAKKR 300
           S+DYIHE+KEQLEISTERFEELRKEISQIEERTGEKGK V+ELQKKAKKLE+ALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKTSEQDLQVLVESTAIESDAG 345
           SSFRQMQLTKLHKSFLLVKDYSERLK SEQ+LQ LVESTAIESD G
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of Tan0022831 vs. ExPASy TrEMBL
Match: A0A5D3CHM1 (Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00030 PE=4 SV=1)

HSP 1 Score: 561.2 bits (1445), Expect = 2.9e-156
Identity = 299/346 (86.42%), Postives = 316/346 (91.33%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTKGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST+GKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  VDAIKDMDGRTIEGRVVRVNGVKTRGGGRFGRENNRFDVERDASWERDRDRGRDYDHDRY 120
           +DAIKDMDGRTIEGRVVRVNGVK+R GGRFG+E NRFD ERD +WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RHRSRNNDWSRDRDRSRERDLDKERVYEHPQDRDLPKDKLLDRDPELEKTSKDNEKVHD- 180
           RHR RNNDWSRD DRSRE DLDKER Y+H QDRDLPKD+ LDRDPELEKTSKDNEK+HD 
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 -LNHDQDWEKDHDADWSGGRGIDNPDDYDKSLDNDRDTLSRRDNGLAIGDRTVRDLSSDS 240
            LNHDQDWEKDH AD SGG GID  DDYDKSLDNDRD + RRDNGL I  RT RDLSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDS 240

Query: 241 SEDYIHEMKEQLEISTERFEELRKEISQIEERTGEKGKHVIELQKKAKKLEEALISAKKR 300
           S+DYIHE+KEQLEISTER EELRKE+SQIEER+GEK K V+ELQKKAKKLE+ALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKTSEQDLQVLVESTAIESDAG 345
           SSFRQ QL KLHKSFLLVKDYS+RLKTSEQ+LQ LVESTAIESD G
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Tan0022831 vs. ExPASy TrEMBL
Match: A0A5A7V7D5 (Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001420 PE=4 SV=1)

HSP 1 Score: 557.8 bits (1436), Expect = 3.3e-155
Identity = 297/346 (85.84%), Postives = 315/346 (91.04%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTKGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRST+GKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  VDAIKDMDGRTIEGRVVRVNGVKTRGGGRFGRENNRFDVERDASWERDRDRGRDYDHDRY 120
           +DAIKDMDGRTIEGRVVRVNGVK+R GGRFG+E NRFD ERD +WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RHRSRNNDWSRDRDRSRERDLDKERVYEHPQDRDLPKDKLLDRDPELEKTSKDNEKVHD- 180
           RHR RNNDWSRD DRSRE DLDKER Y+H QDRDLPKD+ LDRDPELEKTSKDNEK+HD 
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 -LNHDQDWEKDHDADWSGGRGIDNPDDYDKSLDNDRDTLSRRDNGLAIGDRTVRDLSSDS 240
            LNHDQDWEKDH AD SGG GID  DDYDKSLDNDRD + RRDN L I  RT RDLSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240

Query: 241 SEDYIHEMKEQLEISTERFEELRKEISQIEERTGEKGKHVIELQKKAKKLEEALISAKKR 300
           S+DYIHE+KEQLEISTER EELRKE+SQIEER+GEK K V+ELQKKAKKLE+ALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKTSEQDLQVLVESTAIESDAG 345
           SSFRQ QL KLHKSFLLVKDYS+RLKTSEQ+LQ LVESTAIESD G
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Tan0022831 vs. TAIR 10
Match: AT5G19960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 211.5 bits (537), Expect = 1.1e-54
Identity = 155/347 (44.67%), Postives = 210/347 (60.52%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTKGKCYGFVTFTNPRSA 60
           MT+DD +S+YVGGLPYD TE+++RR+F +YG+V+ VKI+NDRS +GKCYGFVTF+N RSA
Sbjct: 1   MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60

Query: 61  VDAIKDMDGRTIEGRVVRVNGVKTRGGGRFGRENNRFDVERDASWERDRDRGRD--YDHD 120
            DAI+DMDG++I GR VRVN V TR GGR      R  ++    W+R  DR  D  Y+ D
Sbjct: 61  DDAIEDMDGKSIGGRAVRVNDVTTR-GGRMNPGPGR--LQPHGGWDRSPDRRSDGNYERD 120

Query: 121 RYRHRSRNNDWSRDRDRSRERDLDKERVYEHPQDRDLPKD-KLLDRDPELEKTSKDNEKV 180
           RY  RSR  D S+DR R   R ++KER YEH  D +   D  ++DR+   E+    +E  
Sbjct: 121 RYSDRSRERDRSQDR-RKDHRYIEKERAYEHSHDFERRNDHDMVDRNGYKERVFDGDE-- 180

Query: 181 HDLNHDQDWEKDHDADWSGGRGIDNPDDYDKSLDNDRDTLSRRDNGLAIGDRTVRDLSSD 240
                  DW  D  +    GRGI+       S    R   ++R++   +     RD  S+
Sbjct: 181 ------GDWRGDR-SYVDNGRGING-----TSAHEGRSQETKREDSTILDGGRGRDHFSN 240

Query: 241 SSEDYIHEMKEQLEISTERFEELRKEISQIEERTGEKGKHVIELQKKAKKLEEALISAKK 300
           SS D  H++KE LE   +  E LR E+  +EER   K     ELQKK+K+LE+ LI+ KK
Sbjct: 241 SSGD--HQVKEDLEALIKMREALRDEVMVMEERLEVKEVVCSELQKKSKRLEDLLINEKK 300

Query: 301 RSSFRQMQLTKLHKSFLLVKDYSERLKTSEQDLQVLVESTAIESDAG 345
             S R+ +L KLHKS+  V++ ++ LK  EQ+LQ+LV S A E  AG
Sbjct: 301 LVSQRRKELAKLHKSYSRVRECTDNLKDCEQELQLLVNSAAREGVAG 327

[Close]

BLAST of Tan0022831 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 79.0 bits (193), Expect = 8.5e-15
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 7   SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-KGKCYGFVTFTNPRSAVDAIK 66
           S +++GG+ Y   EDSLR  F  YG VV  ++I DR T + + +GFVTFT+  +A  AI+
Sbjct: 40  SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99

Query: 67  DMDGRTIEGRVVRVNGVKTR-GGGRFG 92
            +DGR + GRVV+VN    R  GG FG
Sbjct: 100 ALDGRDLHGRVVKVNYANDRTSGGGFG 126

[Close]

BLAST of Tan0022831 vs. TAIR 10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-13
Identity = 66/179 (36.87%), Postives = 89/179 (49.72%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-KGKCYGFVTFTNPRSAVDAI 65
           +S I+VGGL +D TE  L   FD YG +   +I+  R T + + +GF+TFT+ R A DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  KDMDGRTIEGRVVRVNGVKTRGGGR---------------FGRENNRFDVERDASWERDR 125
           K M GR +  +V+ VN  + + GG                 G E+  F   R   W RD 
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130

Query: 126 DRGRDYDHDRYR----HRSRNNDWSRDRDRSRERDLDKERVYEHPQDRDLPKDKLLDRD 165
               D D +R+R     RSR  D    RDR  +RDL++ER  E   DR +  D   DRD
Sbjct: 131 PSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDRYM--DGRRDRD 186

[Close]

BLAST of Tan0022831 vs. TAIR 10
Match: AT1G60650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-13
Identity = 66/179 (36.87%), Postives = 89/179 (49.72%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-KGKCYGFVTFTNPRSAVDAI 65
           +S I+VGGL +D TE  L   FD YG +   +I+  R T + + +GF+TFT+ R A DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  KDMDGRTIEGRVVRVNGVKTRGGGR---------------FGRENNRFDVERDASWERDR 125
           K M GR +  +V+ VN  + + GG                 G E+  F   R   W RD 
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130

Query: 126 DRGRDYDHDRYR----HRSRNNDWSRDRDRSRERDLDKERVYEHPQDRDLPKDKLLDRD 165
               D D +R+R     RSR  D    RDR  +RDL++ER  E   DR +  D   DRD
Sbjct: 131 PSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDRYM--DGRRDRD 186

[Close]

BLAST of Tan0022831 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 73.2 bits (178), Expect = 4.7e-13
Identity = 35/83 (42.17%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 10 YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-STKGKCYGFVTFTNPRSAVDAIKDMD 69
          +VGGL +   ++ L+R F  +G V+  KIINDR S + + +GFVTF + ++  DAI++M+
Sbjct: 9  FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 70 GRTIEGRVVRVNGVKTRGGGRFG 92
          G+ ++GRV+ VN  ++RG G  G
Sbjct: 69 GKELDGRVITVNEAQSRGSGGGG 91

The following BLAST results are available for this feature:

BLAST of Tan0022831 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q18409	1.6e-13	37.65	Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans OX=62...	[more]
O22703	1.7e-12	36.87	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE...	[more]
Q66II8	2.3e-09	27.44	U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp...	[more]
P09406	9.8e-08	29.38	U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis OX=8355 GN=snrnp70 P...	[more]
Q54PM6	8.6e-04	28.32	Uncharacterized protein DDB_G0284459 OS=Dictyostelium discoideum OX=44689 GN=DDB...	[more]

BLAST of Tan0022831 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143227.1	1.0e-158	88.37	U1 small nuclear ribonucleoprotein 70 kDa [Momordica charantia]	[more]
XP_038889756.1	3.8e-158	88.15	serine/threonine-protein kinase prpf4B [Benincasa hispida]	[more]
XP_022946346.1	1.1e-157	87.57	U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita moschata] >KAG6599420.1 Col...	[more]
XP_023547216.1	3.2e-157	87.28	U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo]	[more]
XP_022999196.1	3.2e-157	87.28	U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita maxima]	[more]

BLAST of Tan0022831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQ67	4.8e-159	88.37	U1 small nuclear ribonucleoprotein 70 kDa OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1G3E0	5.4e-158	87.57	U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1KCE4	1.6e-157	87.28	U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A5D3CHM1	2.9e-156	86.42	Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7V7D5	3.3e-155	85.84	Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Tan0022831 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19960.1	1.1e-54	44.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	8.5e-15	47.13	glycine-rich RNA-binding protein 3	[more]
AT1G60650.1	1.2e-13	36.87	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.2	1.2e-13	36.87	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT4G39260.1	4.7e-13	42.17	cold, circadian rhythm, and RNA binding 1	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 316..336
None	No IPR available	COILS	Coil	Coil	coord: 278..298
None	No IPR available	COILS	Coil	Coil	coord: 243..270
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..221
None	No IPR available	PANTHER	PTHR23147:SF172	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..342
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..342
None	No IPR available	CDD	cd00590	RRM_SF	coord: 9..80 e-value: 6.83624E-23 score: 88.5161
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..80 e-value: 1.6E-23 score: 94.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..78 e-value: 1.0E-20 score: 73.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..84 score: 19.535994
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..96 e-value: 1.0E-24 score: 89.0
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0022831.1	Tan0022831.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding