Tan0022603 (gene) Snake gourd v1

Overview


Name	Tan0022603
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG05: 58524737 .. 58524910 (-)
RNA-Seq Expression	Tan0022603
Synteny	Tan0022603

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGAAGGTCCAATTACAAGGTCGAGAGCCAAGAAGCTACAACAAGCTTTAATCACTCATATTCAAGCTATGGTGAGCTCAAAAGAGGAGGTTCTAGAAGATGTTGGAGTCTTTCCCTACATGTTGTGCAAAGTTGAACTTCAAGATGGAGACGCATTAAATGCATTCTAA

mRNA sequence

ATGCCTGAAGGTCCAATTACAAGGTCGAGAGCCAAGAAGCTACAACAAGCTTTAATCACTCATATTCAAGCTATGGTGAGCTCAAAAGAGGAGGTTCTAGAAGATGTTGGAGTCTTTCCCTACATGTTGTGCAAAGTTGAACTTCAAGATGGAGACGCATTAAATGCATTCTAA

Coding sequence (CDS)

ATGCCTGAAGGTCCAATTACAAGGTCGAGAGCCAAGAAGCTACAACAAGCTTTAATCACTCATATTCAAGCTATGGTGAGCTCAAAAGAGGAGGTTCTAGAAGATGTTGGAGTCTTTCCCTACATGTTGTGCAAAGTTGAACTTCAAGATGGAGACGCATTAAATGCATTCTAA

Protein sequence

MPEGPITRSRAKKLQQALITHIQAMVSSKEEVLEDVGVFPYMLCKVELQDGDALNAF

Homology

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BLAST of Tan0022603 vs. NCBI nr
Match: XP_038900633.1 (uncharacterized protein LOC120087799 [Benincasa hispida])

HSP 1 Score: 78.2 bits (191), Expect = 2.6e-11
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1   MPEGPITRSRAKKLQQALITHIQAMVSSKEEVLEDVGVFPYMLCKVELQDGDALNAF 58
           M +G I RSRAKKL QALITHIQAMV+S ++++EDV V  YMLCKVE QD DALNAF
Sbjct: 104 MSQGSIIRSRAKKL-QALITHIQAMVTSTKDIVEDVRVLSYMLCKVEFQDEDALNAF 159

The following BLAST results are available for this feature:

BLAST of Tan0022603 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0022603 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900633.1	2.6e-11	71.93	uncharacterized protein LOC120087799 [Benincasa hispida]	[more]

BLAST of Tan0022603 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Tan0022603 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0022603.1	Tan0022603.1	mRNA