Tan0022552 (gene) Snake gourd v1

Overview


Name	Tan0022552
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RRM domain-containing protein
Location	LG07: 7556984 .. 7561555 (-)
RNA-Seq Expression	Tan0022552
Synteny	Tan0022552

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTATTGAGGAGGTTCAAATTCCAATATCGTTCGGTCAGATCGAAGTCGAACGACGGCCTCCAAGTGTCTGAACTGGGCATTGGGCAATCTTCTTCTTCCCATTCCCAGCTGCGTTCTAAGCTTTGATCCGTAAGTATTTCCTTGCCTTCTTCACATTTTTCCTCTTTCTCCAATATTCTCCGCCCTCTAGGTTTTTCAGTGATAGCGCCGGAATTGACCCCTTCTCATCTTGCTTGTTTCTTTGTAGTCAGAGAGTTTTTCGTGTGAGGAATCCGTTTTCATCTCTCATCGATGTGTTGAAAGTTAAGCTCGTTTTGCTTCTCATGCAGTTCATGAAATGGATGTCGTTTTCGTTTAGTCGCATTTTAATTTTTGCTTTGATTTGGTAGGAATTAGGATCACTGATGTTTTCTGATCAGTGCTCTTATTGGAGCCTACAGCTATGGATTTCTGGTCTCAGTTGTTCCCAATAAACCTTAAATCTGCTTTAACTTCTGCAATTAGCTACATGATATATGACATATCGGGGATGAGATAGAAAGAGGGTTTTCTTTTATTATTATTTTTTTTAAAATTTTTATAAGGACAAGAATGAGGGAAAAAATTCTATTGGGATTTTATATCAGCATTCAACCCACTGGCGTTCCTATATCCAAAAACCATGGCCTTTTGTAATCTCATTTCTTACAATTACTATAAAGAACTTAAAAGTAATCGAGCATTGTATCACTCAAAAGTTGGTTGGTCACTTTTTGATCAGAGAAGGTGCTGTTCCTTACTAAAATCTTCCTTGGCAGTGGCAGAGGTTAAGAGAAGAATTGCTACCATTTTAATACAAATACATATTGAACGAATGTGATCACTTTAATGGATTTTTATATATTTTATACATTTGTATATCGTTGGGCAAGAATGTATACTCTGGAAAGTACATTGAATTTGAGGGGGAGTGTAGGGGTTTAGACAATACTAAAGGATAGTTAGCTTTTGATTGTTATGAAAATGTAGTTGCAAACTGGTGTAACTAGATACGATTAAATTAAACTTATCTTGTCAATACATGGGTTCTCTTAAGTTATTTCCATAATATGTGTTTTGTGTTTTGTGTAATGTTTCTGTTTTGTATTAAAAACTTCAAACATAATTGTCGAGGGTCTCTAACTGTTGTGTCTTGTTGGTTCAATTTATTTAAGTATTCTTATATCCATTTGGATTTCTTCAAATAAGCTATACAAATTCATACAGATATGCTGTAAAGTCCAGAAAAATCCCTATACTCTGTGGAACTGAACTTGCTGACTGGCGAACTTATGGCTATGGTATATTCCTGATCCTCTATTTCATGCATCCAATTCCTTTTTGACTATTTATTCGTTTAGTATTTGAGTCTAAATATCATATTTATATGCATATATTTTCTTTTTTTTGTTTGTTTTTTTGGATGTGTGTTTTGAATCCCTAATTTATGGCAGCTGGATAATAGCTTCTCGATGTTTTATGCTTGTAAAATGCTACCATTTTCCAGTGTTTCCTACTAGATACTTTTAGCAGTTTAATTTTAATGGACATAGAATCTCAAGTCCACAAGATCCTCCCTGAAATGAATTTTGGATGCTTAACTATTTTTGATGATCATGAACCTTGAAACCTATGCCTGATTTGTTTGAGATTGTGCAATTGACCATACCAACATTAGTTCCTTTCCATTCCACGTTCTCTAATTCAATGGTATATATTTCTGGTGGGGAAAGCCACTTGAATGGAGGGTAAAAATATTTATTCTGGAGCAAGATAAAGGTATCCTGAAAAGTAATGTATATCTGGCTCACTGTATGTAGCTGTCAGATTCCTGAATGAAAGGGTAAATTCAGATCACGTTCTCATTCTATTAGCAACTCAGAGTCAAAATTGGGGCCCTGCACCCTTTTTTCTTTAAAATATATATGGTTTTAACCACCCTTCTTTCCTTCCCCCTATTTATTATATCTTTTTAACAACCTTTCCCTAATTGGAGAATCGGAGATTGGTGGAAAACTTTGGTGTTCAATGGCTGTCCAGGTCGCATATTCATACTAAAGCTGAAAGCCCTCTAGGTTAAAAGTTGGAACAGATAGGTGTTTGCCAATGTCTTTATTGAAATGAAAGAGCTAAAAGACAAACTAGTGTCCCTAAATTCTCTACAGGAAAGTAGCAGATTGGACGGGGAACACATTACCCAAAGATTCAACCTGAAAAAGAGTCTTCTTGTTTTGACAGTAGAGGAGGAATGTTTTTGGGGATAGAGATGCAAACAAAAATGGCTCAGGTAGGGGGATAAAATTTTGGATGTTTTCTCAAAGTCTTGGCTGTTAGTTAGAAGGAAAATCTGAGGTATTCACCTGACTAAGGGGATAGATCTTGAATTTTTTAACAATTTCAACCACTTCACAGTGGGAAAGATTTTACCTGAGTGCTAAATTTCGAATTCGATCTCCTTTAAAGAAAGTCTCAGACTTGTGCAAAACTTCATGGAGGAAGAGGTTTTAGAGTAGTTTCTCCTGGAGTGGCAAAGTCCTGGGAACTGGTGTCACTTTTGAATTTAAAATCTTGGAACATCATCAAAAATAATTTTGTGTCTCCATTCCAAGATTTTCCGACTAGAATCGCTCATTTAGCATTGATGAATGTTTACCAGCTTCATTCCATATTAGCATTATTGTGGAGGTCAAGGACATTAGACCTTATTTGTCTGACAACTAGCCCTTACCCAAGGCGGTGACAAAGATTTTGGCTGAAAAATTAAAATTGGCACTCCCGTAGATTATTGCTAAGTATGCACTCCCTTAGATTTTTATTAGAAACCATATGAGAAGACAAATCTTGATTCCAAATGCTGTGGATTAGAGAGGGTGTCTTCATCTTACAGACTTCTTTATCATCCTTAATGGGAAGCCAAGAGGGAGCTTGACAAGAGGGTCAAGTCAGGTTGGCCAACTGTATCCAATAGTTTGACTGGACCATATTTTCGAGAGCTTTGGAGACAAATTTCATTTGGCTTTGATGAGAGGTTGAGTAGAATGAAATTAGAGAACATTTTGAATATGAGGAACGTACAAATCTTTGGGAGAATGCTGCTACTTTTTTTTTGTCGTTGTCGTTTGTTGAGGATCCCACTTTGGAAAAGTGGACAGAAACCTCACAATATATAAGATATATGGGCTACTCCACTCATTGTCAATTGGTTTTGAGATGGAACCCCATATAATCTAATATGGTATCAGACCCATTAAACCCAAATGGGTATTCGGTCCAAAAAATTGAAATTGGGATCCGATCCAAGAATGATGAACCCAAAAAGGCACCATCTTGGAGGCATGTTGAGGATCCCACATTGGAAAAGTGAAGAGAAACCTCACAATATATAAGATATATGGGCTACTCCACTCATTGCCAATTGGTTTTGAGATGAAACCTCATATAATCTAATATCGTTGACGTTGTCAGAAGCCTATGAAATTGACAACTTATTTGCTTATGATGTGATGGGATTTAAGTGAGGTTCTGTAGACTTGTATTTTCTTGCTGTGATGATATAACACTATTTTTTATTTTATGGAATGACTGCTGCAGGATTCAAGTGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTCTACATTGGCAATCTTGACCTCAGAATTACAGAGTAAGGAAAATTATTGTCCCAGCATCTGCAATGTATTTGTCTTCCAATTTTGCTCTTCTATCTTCTATATTGAAGTTTGTATCAACTTGTTTCAGAGCGGCTCTCATTAAAATGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACTCGTGGTCCGAAGCGTGGAGAGCCACGGGGATTTGCTTTCATTGAATACAGCTCCAAGGAGGTAAGTTGCTTGGTTTACTACTTCGTAGCCTCTGTCAAGCAATTCCTTATTTTTGCTTGTAAAGTGAGTATGCAGGAAGCTAAATTAGCTAAAGAGAAGATGCATGGAAAATTAGCTTGCGGTCGTCCATTGGTCGTACGCCTTGCGAGTGAGAAGCTCATGATCAACACAACAAATAATACTTCAACAGCAGCAGGAGAGTCGACTAAATCAAGACTCAGTGGCAGCAATTACGGACAGCTGACTCGCAGCGATAAAATTGCTGCCATAAAGAATAAATTGAGAGCTTTGGAAGGAGGGGGCGAGAGCTCTAGTGTGAAAAAACAGAAGCAAGATCACACCAGTTGCAGCGATAATATTGATAAGTCATCACTCAAAACATCCTGATGCTGAAGAAAACTGAGAGGTTGGTAGGTTGTATTTACTCATATCTCTTCTGCTGTTATAAACCTCTATAGGAAAGTCTATAGGAAAATCTGATGCTTAGTGTTAAGCTTTAATATGATGCTGACATACACACAGCTTCATGGCTGATAATTGATAATCTGGATATGCGTTTCTCTTTTCTTGTCCTTTCTTTTTCGTTCTCGATACAACAAGTGGTGGGAAACCGAACTGGGGTGGTAAATATGAGAAATTATTGCAGGAGGCTGCCACAATGTGAC

mRNA sequence

CTTTATTGAGGAGGTTCAAATTCCAATATCGTTCGGTCAGATCGAAGTCGAACGACGGCCTCCAAGTGTCTGAACTGGGCATTGGGCAATCTTCTTCTTCCCATTCCCAGCTGCGTTCTAAGCTTTGATCCTCAGAGAGTTTTTCGTGTGAGGAATCCGTTTTCATCTCTCATCGATGTGTTGAAAATATGCTGTAAAGTCCAGAAAAATCCCTATACTCTGTGGAACTGAACTTGCTGACTGGCGAACTTATGGCTATGGATTCAAGTGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTCTACATTGGCAATCTTGACCTCAGAATTACAGAAGCGGCTCTCATTAAAATGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACTCGTGGTCCGAAGCGTGGAGAGCCACGGGGATTTGCTTTCATTGAATACAGCTCCAAGGAGGAAGCTAAATTAGCTAAAGAGAAGATGCATGGAAAATTAGCTTGCGGTCGTCCATTGGTCGTACGCCTTGCGAGTGAGAAGCTCATGATCAACACAACAAATAATACTTCAACAGCAGCAGGAGAGTCGACTAAATCAAGACTCAGTGGCAGCAATTACGGACAGCTGACTCGCAGCGATAAAATTGCTGCCATAAAGAATAAATTGAGAGCTTTGGAAGGAGGGGGCGAGAGCTCTAGTGTGAAAAAACAGAAGCAAGATCACACCAGTTGCAGCGATAATATTGATAAGTCATCACTCAAAACATCCTGATGCTGAAGAAAACTGAGAGGTTGGTAGGTTGTATTTACTCATATCTCTTCTGCTGTTATAAACCTCTATAGGAAAGTCTATAGGAAAATCTGATGCTTAGTGTTAAGCTTTAATATGATGCTGACATACACACAGCTTCATGGCTGATAATTGATAATCTGGATATGCGTTTCTCTTTTCTTGTCCTTTCTTTTTCGTTCTCGATACAACAAGTGGTGGGAAACCGAACTGGGGTGGTAAATATGAGAAATTATTGCAGGAGGCTGCCACAATGTGAC

Coding sequence (CDS)

ATGGCTATGGATTCAAGTGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTCTACATTGGCAATCTTGACCTCAGAATTACAGAAGCGGCTCTCATTAAAATGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACTCGTGGTCCGAAGCGTGGAGAGCCACGGGGATTTGCTTTCATTGAATACAGCTCCAAGGAGGAAGCTAAATTAGCTAAAGAGAAGATGCATGGAAAATTAGCTTGCGGTCGTCCATTGGTCGTACGCCTTGCGAGTGAGAAGCTCATGATCAACACAACAAATAATACTTCAACAGCAGCAGGAGAGTCGACTAAATCAAGACTCAGTGGCAGCAATTACGGACAGCTGACTCGCAGCGATAAAATTGCTGCCATAAAGAATAAATTGAGAGCTTTGGAAGGAGGGGGCGAGAGCTCTAGTGTGAAAAAACAGAAGCAAGATCACACCAGTTGCAGCGATAATATTGATAAGTCATCACTCAAAACATCCTGA

Protein sequence

MAMDSSGFVDEKCESKLYIGNLDLRITEAALIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMINTTNNTSTAAGESTKSRLSGSNYGQLTRSDKIAAIKNKLRALEGGGESSSVKKQKQDHTSCSDNIDKSSLKTS

Homology

[Close]

BLAST of Tan0022552 vs. ExPASy Swiss-Prot
Match: Q6PBM8 (Probable RNA-binding protein 18 OS=Danio rerio OX=7955 GN=rbm18 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.4e-15
Identity = 48/128 (37.50%), Postives = 74/128 (57.81%), Query Frame = 0


Query: 16  KLYIGNLDLRITEAALIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLA 75
           +L+IGN+D +ITE  L+K+   FGK+   DFL+H  GP  G+PRG+ F+ + +KEEA+ A
Sbjct: 24  RLWIGNIDPKITEYHLVKLLEKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFHTKEEAERA 83

Query: 76  KEKMHGKLACGRPLVVRLASEKLMINTTNNTSTAAGESTKSRLSGSNYGQLTRSDKIAAI 135
            + ++GKLA  + LVVR A  +         +  A     S  +      L+ + KI AI
Sbjct: 84  IQCLNGKLALSKKLVVRWAHAQRFEPFRGEKNMPASLEPSSSEAEDLPTSLSVNAKIRAI 143

Query: 136 KNKLRALE 144
           + KL+ +E
Sbjct: 144 EAKLQMME 151

[Close]

BLAST of Tan0022552 vs. ExPASy Swiss-Prot
Match: Q96H35 (Probable RNA-binding protein 18 OS=Homo sapiens OX=9606 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.0e-14
Identity = 47/128 (36.72%), Postives = 74/128 (57.81%), Query Frame = 0


Query: 16  KLYIGNLDLRITEAALIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLA 75
           +L+IGNLD +ITE  L+K+   FGK+   DFL+H  G   G+PRG+ F+ + +K+EA+ A
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQA 85

Query: 76  KEKMHGKLACGRPLVVRLASEKLMINTTNNTSTAAGESTK-SRLSGSNYGQLTRSDKIAA 135
            + ++GKLA  + LVVR A  ++     N        S + S  +      L+ + KI A
Sbjct: 86  IQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSSTEPTQSNLSVTAKIKA 145

Query: 136 IKNKLRAL 143
           I+ KL+ +
Sbjct: 146 IEAKLKMM 153

[Close]

BLAST of Tan0022552 vs. ExPASy Swiss-Prot
Match: Q5R6W3 (Probable RNA-binding protein 18 OS=Pongo abelii OX=9601 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.0e-14
Identity = 47/128 (36.72%), Postives = 74/128 (57.81%), Query Frame = 0


Query: 16  KLYIGNLDLRITEAALIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLA 75
           +L+IGNLD +ITE  L+K+   FGK+   DFL+H  G   G+PRG+ F+ + +K+EA+ A
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQA 85

Query: 76  KEKMHGKLACGRPLVVRLASEKLMINTTNNTSTAAGESTK-SRLSGSNYGQLTRSDKIAA 135
            + ++GKLA  + LVVR A  ++     N        S + S  +      L+ + KI A
Sbjct: 86  IQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSSTEPTQSNLSVTAKIKA 145

Query: 136 IKNKLRAL 143
           I+ KL+ +
Sbjct: 146 IEAKLKMM 153

[Close]

BLAST of Tan0022552 vs. ExPASy Swiss-Prot
Match: Q9CR83 (Probable RNA-binding protein 18 OS=Mus musculus OX=10090 GN=Rbm18 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-13
Identity = 47/128 (36.72%), Postives = 74/128 (57.81%), Query Frame = 0


Query: 16  KLYIGNLDLRITEAALIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLA 75
           +L+IGNLD +ITE  L+K+   FGK+   DFL+H  G   G+PRG+ F+ + +K+EA+ A
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQA 85

Query: 76  KEKMHGKLACGRPLVVRLASEKLMINTTNNTSTAAGESTK-SRLSGSNYGQLTRSDKIAA 135
            + ++GKLA  + LVVR A  ++     N        S + S  +      L+ + KI A
Sbjct: 86  IQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSSTEPAQSNLSVTAKIKA 145

Query: 136 IKNKLRAL 143
           I+ KL+ +
Sbjct: 146 IEAKLKMM 153

[Close]

BLAST of Tan0022552 vs. ExPASy Swiss-Prot
Match: Q66J99 (Probable RNA-binding protein 18 OS=Xenopus laevis OX=8355 GN=rbm18 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-13
Identity = 55/164 (33.54%), Postives = 86/164 (52.44%), Query Frame = 0


Query: 16  KLYIGNLDLRITEAALIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLA 75
           +L+IGN+D +ITE  L+K+   FGK+   DFL+H  GP  G+PRG+ F+ + +K EA+ A
Sbjct: 26  RLWIGNVDPKITEYHLLKLLQKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFETKAEAERA 85

Query: 76  KEKMHGKLACGRPLVVRLASEKL-MINTTNNTSTAAGESTKSRLSGSNYGQLTRSDKIAA 135
              ++GK+A  + LVVR A  ++   +   N          S  +      L+ S KI A
Sbjct: 86  IHCLNGKMALSKKLVVRWAHAQIKRYDNCKNEKVLPISLEPSSSTEPTQSTLSVSAKIKA 145

Query: 136 IKNKLRALEGG------GESSSVKKQKQDHTSCSDNIDKSSLKT 173
           I+ KL+ +         G+SS    +  +   C+    KSSLK+
Sbjct: 146 IEAKLKMMAENPDPLLPGQSSYSYFKANEKKKCTP-YHKSSLKS 188

[Close]

BLAST of Tan0022552 vs. NCBI nr
Match: XP_008437528.1 (PREDICTED: probable RNA-binding protein 18 [Cucumis melo])

HSP 1 Score: 297.0 bits (759), Expect = 1.1e-76
Identity = 154/171 (90.06%), Postives = 161/171 (94.15%), Query Frame = 0


Query: 3   MDSSGFVDEKCESKLYIGNLDLRITEAALIKMFSPFGKIISEDFLWHTRGPKRGEPRGFA 62
           MDS+GFVDEKCESKLYIGNLDLRITEAALIK+FSPFGKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 1   MDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 60

Query: 63  FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMINTTNNTSTAAGESTKSRLSGSN 122
           FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLM+NT N+TS AA ES KSRL GS+
Sbjct: 61  FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSS 120

Query: 123 YGQLTRSDKIAAIKNKLRALEGGGESSSVKKQKQDHTSCSDNIDKSSLKTS 174
           YGQLTRSDKIAAIKNKLRALEGGGESSSVKK KQD+ S  D+IDKS LKTS
Sbjct: 121 YGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSFLKTS 171

[Close]

BLAST of Tan0022552 vs. NCBI nr
Match: KAA0042597.1 (putative RNA-binding protein 18 [Cucumis melo var. makuwa])

HSP 1 Score: 295.0 bits (754), Expect = 4.1e-76
Identity = 153/170 (90.00%), Postives = 160/170 (94.12%), Query Frame = 0


Query: 4   DSSGFVDEKCESKLYIGNLDLRITEAALIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 63
           DS+GFVDEKCESKLYIGNLDLRITEAALIK+FSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 34  DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 93

Query: 64  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMINTTNNTSTAAGESTKSRLSGSNY 123
           IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLM+NT N+TS AA ES KSRL GS+Y
Sbjct: 94  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSY 153

Query: 124 GQLTRSDKIAAIKNKLRALEGGGESSSVKKQKQDHTSCSDNIDKSSLKTS 174
           GQLTRSDKIAAIKNKLRALEGGGESSSVKK KQD+ S  D+IDKS LKTS
Sbjct: 154 GQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSFLKTS 203

[Close]

BLAST of Tan0022552 vs. NCBI nr
Match: XP_011654647.1 (probable RNA-binding protein 18 isoform X2 [Cucumis sativus] >KAE8647815.1 hypothetical protein Csa_000614 [Cucumis sativus])

HSP 1 Score: 293.1 bits (749), Expect = 1.6e-75
Identity = 153/171 (89.47%), Postives = 159/171 (92.98%), Query Frame = 0


Query: 3   MDSSGFVDEKCESKLYIGNLDLRITEAALIKMFSPFGKIISEDFLWHTRGPKRGEPRGFA 62
           MDS+GFVDEKCESKLYIGNLDLRITEAALIK+FSPFGKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 1   MDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 60

Query: 63  FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMINTTNNTSTAAGESTKSRLSGSN 122
           FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLM NTTN+TS  A ES KSRL GS+
Sbjct: 61  FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMTNTTNDTSRTASESRKSRLGGSS 120

Query: 123 YGQLTRSDKIAAIKNKLRALEGGGESSSVKKQKQDHTSCSDNIDKSSLKTS 174
           YGQLTRSDKIAAIKNKLRALEGGGESSSVKK KQD+ S  D+ DKSSLK S
Sbjct: 121 YGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISYKDHNDKSSLKPS 171

[Close]

BLAST of Tan0022552 vs. NCBI nr
Match: XP_022157813.1 (probable RNA-binding protein 18 isoform X3 [Momordica charantia])

HSP 1 Score: 289.3 bits (739), Expect = 2.2e-74
Identity = 154/175 (88.00%), Postives = 160/175 (91.43%), Query Frame = 0


Query: 1   MAMDSSGFVDEKCESKLYIGNLDLRITEAALIKMFSPFGKIISEDFLWHTRGPKRGEPRG 60
           M MDSSGFVDEKCESKLYIGNLDLRITEA LIKMFSPFGKIISEDFLWHTRGPKRGEPRG
Sbjct: 1   MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 60

Query: 61  FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMINTTNNTSTAAGESTKSRLSG 120
           FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEK MI+TT + S AAGES+KSRL G
Sbjct: 61  FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGG 120

Query: 121 SNYGQLTRSDKIAAIKNKLRALEGGGESSS--VKKQKQDHTSCSDNIDKSSLKTS 174
           SNYGQ+TR+DKIAAIKNKLRALEG  ESSS  VKKQKQD+ SC DNIDK  LKTS
Sbjct: 121 SNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDK-PLKTS 174

[Close]

BLAST of Tan0022552 vs. NCBI nr
Match: XP_022157798.1 (probable RNA-binding protein 18 isoform X1 [Momordica charantia] >XP_022157801.1 probable RNA-binding protein 18 isoform X1 [Momordica charantia])

HSP 1 Score: 289.3 bits (739), Expect = 2.2e-74
Identity = 154/175 (88.00%), Postives = 160/175 (91.43%), Query Frame = 0


Query: 1   MAMDSSGFVDEKCESKLYIGNLDLRITEAALIKMFSPFGKIISEDFLWHTRGPKRGEPRG 60
           M MDSSGFVDEKCESKLYIGNLDLRITEA LIKMFSPFGKIISEDFLWHTRGPKRGEPRG
Sbjct: 50  MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 109

Query: 61  FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMINTTNNTSTAAGESTKSRLSG 120
           FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEK MI+TT + S AAGES+KSRL G
Sbjct: 110 FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGG 169

Query: 121 SNYGQLTRSDKIAAIKNKLRALEGGGESSS--VKKQKQDHTSCSDNIDKSSLKTS 174
           SNYGQ+TR+DKIAAIKNKLRALEG  ESSS  VKKQKQD+ SC DNIDK  LKTS
Sbjct: 170 SNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDK-PLKTS 223

[Close]

BLAST of Tan0022552 vs. ExPASy TrEMBL
Match: A0A1S3ATX2 (probable RNA-binding protein 18 OS=Cucumis melo OX=3656 GN=LOC103482914 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 5.2e-77
Identity = 154/171 (90.06%), Postives = 161/171 (94.15%), Query Frame = 0


Query: 3   MDSSGFVDEKCESKLYIGNLDLRITEAALIKMFSPFGKIISEDFLWHTRGPKRGEPRGFA 62
           MDS+GFVDEKCESKLYIGNLDLRITEAALIK+FSPFGKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 1   MDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 60

Query: 63  FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMINTTNNTSTAAGESTKSRLSGSN 122
           FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLM+NT N+TS AA ES KSRL GS+
Sbjct: 61  FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSS 120

Query: 123 YGQLTRSDKIAAIKNKLRALEGGGESSSVKKQKQDHTSCSDNIDKSSLKTS 174
           YGQLTRSDKIAAIKNKLRALEGGGESSSVKK KQD+ S  D+IDKS LKTS
Sbjct: 121 YGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSFLKTS 171

[Close]

BLAST of Tan0022552 vs. ExPASy TrEMBL
Match: A0A5A7TLJ6 (Putative RNA-binding protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G00930 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.0e-76
Identity = 153/170 (90.00%), Postives = 160/170 (94.12%), Query Frame = 0


Query: 4   DSSGFVDEKCESKLYIGNLDLRITEAALIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 63
           DS+GFVDEKCESKLYIGNLDLRITEAALIK+FSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 34  DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 93

Query: 64  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMINTTNNTSTAAGESTKSRLSGSNY 123
           IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLM+NT N+TS AA ES KSRL GS+Y
Sbjct: 94  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSY 153

Query: 124 GQLTRSDKIAAIKNKLRALEGGGESSSVKKQKQDHTSCSDNIDKSSLKTS 174
           GQLTRSDKIAAIKNKLRALEGGGESSSVKK KQD+ S  D+IDKS LKTS
Sbjct: 154 GQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSFLKTS 203

[Close]

BLAST of Tan0022552 vs. ExPASy TrEMBL
Match: A0A0A0KJM9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G140500 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.9e-75
Identity = 152/170 (89.41%), Postives = 158/170 (92.94%), Query Frame = 0


Query: 4   DSSGFVDEKCESKLYIGNLDLRITEAALIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 63
           DS+GFVDEKCESKLYIGNLDLRITEAALIK+FSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 34  DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 93

Query: 64  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMINTTNNTSTAAGESTKSRLSGSNY 123
           IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLM NTTN+TS  A ES KSRL GS+Y
Sbjct: 94  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMTNTTNDTSRTASESRKSRLGGSSY 153

Query: 124 GQLTRSDKIAAIKNKLRALEGGGESSSVKKQKQDHTSCSDNIDKSSLKTS 174
           GQLTRSDKIAAIKNKLRALEGGGESSSVKK KQD+ S  D+ DKSSLK S
Sbjct: 154 GQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISYKDHNDKSSLKPS 203

[Close]

BLAST of Tan0022552 vs. ExPASy TrEMBL
Match: A0A6J1DUC5 (probable RNA-binding protein 18 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.1e-74
Identity = 154/175 (88.00%), Postives = 160/175 (91.43%), Query Frame = 0


Query: 1   MAMDSSGFVDEKCESKLYIGNLDLRITEAALIKMFSPFGKIISEDFLWHTRGPKRGEPRG 60
           M MDSSGFVDEKCESKLYIGNLDLRITEA LIKMFSPFGKIISEDFLWHTRGPKRGEPRG
Sbjct: 50  MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 109

Query: 61  FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMINTTNNTSTAAGESTKSRLSG 120
           FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEK MI+TT + S AAGES+KSRL G
Sbjct: 110 FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGG 169

Query: 121 SNYGQLTRSDKIAAIKNKLRALEGGGESSS--VKKQKQDHTSCSDNIDKSSLKTS 174
           SNYGQ+TR+DKIAAIKNKLRALEG  ESSS  VKKQKQD+ SC DNIDK  LKTS
Sbjct: 170 SNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDK-PLKTS 223

[Close]

BLAST of Tan0022552 vs. ExPASy TrEMBL
Match: A0A6J1DUD9 (probable RNA-binding protein 18 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.1e-74
Identity = 154/175 (88.00%), Postives = 160/175 (91.43%), Query Frame = 0


Query: 1   MAMDSSGFVDEKCESKLYIGNLDLRITEAALIKMFSPFGKIISEDFLWHTRGPKRGEPRG 60
           M MDSSGFVDEKCESKLYIGNLDLRITEA LIKMFSPFGKIISEDFLWHTRGPKRGEPRG
Sbjct: 1   MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 60

Query: 61  FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMINTTNNTSTAAGESTKSRLSG 120
           FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEK MI+TT + S AAGES+KSRL G
Sbjct: 61  FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGG 120

Query: 121 SNYGQLTRSDKIAAIKNKLRALEGGGESSS--VKKQKQDHTSCSDNIDKSSLKTS 174
           SNYGQ+TR+DKIAAIKNKLRALEG  ESSS  VKKQKQD+ SC DNIDK  LKTS
Sbjct: 121 SNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDK-PLKTS 174

[Close]

BLAST of Tan0022552 vs. TAIR 10
Match: AT5G52545.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 4.9e-11
Identity = 41/79 (51.90%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 79  MHGKLACGRPLVVRLASEKLMINTTNNTS-TAAGESTKSR-LSGSNYGQLTRSDKIAAIK 138
           MHG+LACGRPLVVRLASEK + +++++ S  +  E  ++R ++GS+ GQ++R +K+ AIK
Sbjct: 1   MHGRLACGRPLVVRLASEKHLEDSSHDHSKRSLPEGNRTRFVNGSSSGQMSRDEKVTAIK 60

Query: 139 NKLRALEGGGESSSVKKQK 156
           NKL+ALE   E    KKQK
Sbjct: 61  NKLKALE-EDEKRDPKKQK 78

[Close]

BLAST of Tan0022552 vs. TAIR 10
Match: AT1G71770.1 (poly(A)-binding protein 5 )

HSP 1 Score: 61.2 bits (147), Expect = 9.2e-10
Identity = 33/83 (39.76%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 15  SKLYIGNLDLRITEAALIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKL 74
           S LY+ NLD  + +  L +MFS +G + S   + +++G      RGF F+ YS+ EEA L
Sbjct: 342 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS----RGFGFVAYSNPEEALL 401

Query: 75  AKEKMHGKLACGRPLVVRLASEK 98
           A ++M+GK+   +PL V LA  K
Sbjct: 402 AMKEMNGKMIGRKPLYVALAQRK 420

[Close]

BLAST of Tan0022552 vs. TAIR 10
Match: AT1G71770.2 (poly(A)-binding protein 5 )

HSP 1 Score: 61.2 bits (147), Expect = 9.2e-10
Identity = 33/83 (39.76%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 15  SKLYIGNLDLRITEAALIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKL 74
           S LY+ NLD  + +  L +MFS +G + S   + +++G      RGF F+ YS+ EEA L
Sbjct: 342 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS----RGFGFVAYSNPEEALL 401

Query: 75  AKEKMHGKLACGRPLVVRLASEK 98
           A ++M+GK+   +PL V LA  K
Sbjct: 402 AMKEMNGKMIGRKPLYVALAQRK 420

[Close]

BLAST of Tan0022552 vs. TAIR 10
Match: AT3G16380.1 (poly(A) binding protein 6 )

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-09
Identity = 31/83 (37.35%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 15  SKLYIGNLDLRITEAALIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKL 74
           S LY+ NL   + E  L ++F  +G+I+S   + H    + G  +GF F+ +S+ EE+K 
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCH----ENGRSKGFGFVCFSNCEESKQ 363

Query: 75  AKEKMHGKLACGRPLVVRLASEK 98
           AK  ++G L  G+P+VVR+A  K
Sbjct: 364 AKRYLNGFLVDGKPIVVRVAERK 382

[Close]

BLAST of Tan0022552 vs. TAIR 10
Match: AT5G03580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-08
Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 15 SKLYIGNLDLRITEAALIKMFSPFGKII----SEDFLWHTRGPKRGEPRGFAFIEYSSKE 74
          + LYI NLD +++E  L  MFS FGK+I    ++DF        RGE RGFAFIE+ S +
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDF--------RGESRGFAFIEFESAD 76

Query: 75 EAKLAKEKMHGKLACGRPLVVR 93
           A  A   M G+L   + L V+
Sbjct: 77 SAGRAMLHMDGRLIGQKILCVQ 90

The following BLAST results are available for this feature:

BLAST of Tan0022552 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PBM8	2.4e-15	37.50	Probable RNA-binding protein 18 OS=Danio rerio OX=7955 GN=rbm18 PE=2 SV=1	[more]
Q96H35	6.0e-14	36.72	Probable RNA-binding protein 18 OS=Homo sapiens OX=9606 GN=RBM18 PE=2 SV=1	[more]
Q5R6W3	6.0e-14	36.72	Probable RNA-binding protein 18 OS=Pongo abelii OX=9601 GN=RBM18 PE=2 SV=1	[more]
Q9CR83	1.0e-13	36.72	Probable RNA-binding protein 18 OS=Mus musculus OX=10090 GN=Rbm18 PE=2 SV=1	[more]
Q66J99	3.0e-13	33.54	Probable RNA-binding protein 18 OS=Xenopus laevis OX=8355 GN=rbm18 PE=2 SV=1	[more]

BLAST of Tan0022552 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437528.1	1.1e-76	90.06	PREDICTED: probable RNA-binding protein 18 [Cucumis melo]	[more]
KAA0042597.1	4.1e-76	90.00	putative RNA-binding protein 18 [Cucumis melo var. makuwa]	[more]
XP_011654647.1	1.6e-75	89.47	probable RNA-binding protein 18 isoform X2 [Cucumis sativus] >KAE8647815.1 hypot...	[more]
XP_022157813.1	2.2e-74	88.00	probable RNA-binding protein 18 isoform X3 [Momordica charantia]	[more]
XP_022157798.1	2.2e-74	88.00	probable RNA-binding protein 18 isoform X1 [Momordica charantia] >XP_022157801.1...	[more]

BLAST of Tan0022552 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3ATX2	5.2e-77	90.06	probable RNA-binding protein 18 OS=Cucumis melo OX=3656 GN=LOC103482914 PE=4 SV=...	[more]
A0A5A7TLJ6	2.0e-76	90.00	Putative RNA-binding protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A0A0KJM9	2.9e-75	89.41	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G140500 PE=4 SV...	[more]
A0A6J1DUC5	1.1e-74	88.00	probable RNA-binding protein 18 isoform X1 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1DUD9	1.1e-74	88.00	probable RNA-binding protein 18 isoform X3 OS=Momordica charantia OX=3673 GN=LOC...	[more]

BLAST of Tan0022552 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52545.1	4.9e-11	51.90	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G71770.1	9.2e-10	39.76	poly(A)-binding protein 5	[more]
AT1G71770.2	9.2e-10	39.76	poly(A)-binding protein 5	[more]
AT3G16380.1	2.1e-09	37.35	poly(A) binding protein 6	[more]
AT5G03580.1	1.3e-08	42.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 16..95 e-value: 7.3E-7 score: 38.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 17..70 e-value: 3.6E-8 score: 33.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 15..121 score: 13.498382
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 12..130 e-value: 8.0E-19 score: 69.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..198
None	No IPR available	PANTHER	PTHR21245	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	coord: 10..189
None	No IPR available	PANTHER	PTHR21245:SF2	RNA-BINDING PROTEIN 18-RELATED	coord: 10..189
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 15..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0022552.1	Tan0022552.1	mRNA
Tan0022552.2	Tan0022552.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding