Tan0021936 (gene) Snake gourd v1

Overview


Name	Tan0021936
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	50S ribosomal protein L12
Location	LG11: 5605012 .. 5605947 (-)
RNA-Seq Expression	Tan0021936
Synteny	Tan0021936

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATATCAGTCGTGTCACTAGGCCTTCTATATCCAATTCTTCCTATCAACTCCTTATCCTATTTTCTCTCCTCTGTTCAGTTCGTCCTTCTTTTCTTCTTCACACCAGAAAGAAGAAAATGGCTTCCACACTCTCCACTCTCACAACCCTGCGTTCCCCATCTCACCTTTCTTATTCCCATTCCTCCTTTTCCACTCAGTCCTCCAAATCCACAGCCCTCCAATTCCCATTCAACCCTTCTTCCACCGTCACCTCCCACCGCGCCACCCACCTCCGCCCCATCGCCGCCGTGTCAGCCCCTGAGAAAATCGAAAAGCTTGGCTCTGACATCTCCAACCTCACACTAGAAGAAGCCCGGCTTCTGGTCGACTTCCTCCAAGACAAGCTTGGGGTCTCCGCTGCCGCCTTCGCCCCCGCCGCCGTCGTGGCAGCACCCGGCGCCGCCGCGGGCGGGGACGCGGCCGCCGAGGCGGTGGAGGAGAAGACAGAATTCGATGTGGTGATTGAGGATGTGCCTAGCAATGCCAGAATTGCAGTGATTAAGGCAGTGAGGGCATTGACAAGCTTGGCTTTGAAGGAAGCCAAAGAACTCATCGAAGGTCTGCCTAAGAAGTTCAAGGAAGGGATTTCGAAAGAAGAGGCTGAGGATGCAAAGAAACAGCTTGAAGAAGCTGGAGCTAAAATCGCCATTGTTTAATGGCGGGAGGGGAAAGGAAACAAGAGTTTATTTGTTTTAGAAAAACTTGCGGATTTTGCCATTTTTTTTCTTGATGTGAACTGTGAAATCATCGTTCTGACATATGCCCACTTAGAATCTTTTGCTTGTTTTATGTTGTTCGCCAAATTGTTGTCTTGTTCTTCTTCTTCCTTGTTTGGGTCTGTAAAATTACATAAACTTGTATTTCAACATCTGTTTCTGAAATTTCATATAATA

mRNA sequence

CAAAATATCAGTCGTGTCACTAGGCCTTCTATATCCAATTCTTCCTATCAACTCCTTATCCTATTTTCTCTCCTCTGTTCAGTTCGTCCTTCTTTTCTTCTTCACACCAGAAAGAAGAAAATGGCTTCCACACTCTCCACTCTCACAACCCTGCGTTCCCCATCTCACCTTTCTTATTCCCATTCCTCCTTTTCCACTCAGTCCTCCAAATCCACAGCCCTCCAATTCCCATTCAACCCTTCTTCCACCGTCACCTCCCACCGCGCCACCCACCTCCGCCCCATCGCCGCCGTGTCAGCCCCTGAGAAAATCGAAAAGCTTGGCTCTGACATCTCCAACCTCACACTAGAAGAAGCCCGGCTTCTGGTCGACTTCCTCCAAGACAAGCTTGGGGTCTCCGCTGCCGCCTTCGCCCCCGCCGCCGTCGTGGCAGCACCCGGCGCCGCCGCGGGCGGGGACGCGGCCGCCGAGGCGGTGGAGGAGAAGACAGAATTCGATGTGGTGATTGAGGATGTGCCTAGCAATGCCAGAATTGCAGTGATTAAGGCAGTGAGGGCATTGACAAGCTTGGCTTTGAAGGAAGCCAAAGAACTCATCGAAGGTCTGCCTAAGAAGTTCAAGGAAGGGATTTCGAAAGAAGAGGCTGAGGATGCAAAGAAACAGCTTGAAGAAGCTGGAGCTAAAATCGCCATTGTTTAATGGCGGGAGGGGAAAGGAAACAAGAGTTTATTTGTTTTAGAAAAACTTGCGGATTTTGCCATTTTTTTTCTTGATGTGAACTGTGAAATCATCGTTCTGACATATGCCCACTTAGAATCTTTTGCTTGTTTTATGTTGTTCGCCAAATTGTTGTCTTGTTCTTCTTCTTCCTTGTTTGGGTCTGTAAAATTACATAAACTTGTATTTCAACATCTGTTTCTGAAATTTCATATAATA

Coding sequence (CDS)

ATGGCTTCCACACTCTCCACTCTCACAACCCTGCGTTCCCCATCTCACCTTTCTTATTCCCATTCCTCCTTTTCCACTCAGTCCTCCAAATCCACAGCCCTCCAATTCCCATTCAACCCTTCTTCCACCGTCACCTCCCACCGCGCCACCCACCTCCGCCCCATCGCCGCCGTGTCAGCCCCTGAGAAAATCGAAAAGCTTGGCTCTGACATCTCCAACCTCACACTAGAAGAAGCCCGGCTTCTGGTCGACTTCCTCCAAGACAAGCTTGGGGTCTCCGCTGCCGCCTTCGCCCCCGCCGCCGTCGTGGCAGCACCCGGCGCCGCCGCGGGCGGGGACGCGGCCGCCGAGGCGGTGGAGGAGAAGACAGAATTCGATGTGGTGATTGAGGATGTGCCTAGCAATGCCAGAATTGCAGTGATTAAGGCAGTGAGGGCATTGACAAGCTTGGCTTTGAAGGAAGCCAAAGAACTCATCGAAGGTCTGCCTAAGAAGTTCAAGGAAGGGATTTCGAAAGAAGAGGCTGAGGATGCAAAGAAACAGCTTGAAGAAGCTGGAGCTAAAATCGCCATTGTTTAA

Protein sequence

MASTLSTLTTLRSPSHLSYSHSSFSTQSSKSTALQFPFNPSSTVTSHRATHLRPIAAVSAPEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLEEAGAKIAIV

Homology

[Close]

BLAST of Tan0021936 vs. ExPASy Swiss-Prot
Match: P36688 (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 9.6e-53
Identity = 133/191 (69.63%), Postives = 157/191 (82.20%), Query Frame = 0


Query: 1   MASTLSTLTTLRSPSHLSYSHSSFSTQSSKSTALQFPFNPSSTVTSHRATHLRPIAAVSA 60
           MASTLST+ TLRSPS  + + +  S    K T L+FP   +  + + RAT LRP+AAV A
Sbjct: 1   MASTLSTI-TLRSPSPSTATSTHASIPFPKKT-LEFPIR-TPKLQNRRATFLRPLAAVEA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVE 120
           PEK+ +LG +ISNLTL +A+ LV++LQDKLGV+AA+FAPAAVVAAPGAAA    A   VE
Sbjct: 61  PEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAA---EAPAVVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDVVI++VPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEG+SK+EAEDAKK
Sbjct: 121 EKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKK 180

Query: 181 QLEEAGAKIAI 192
           QLEEAGAK++I
Sbjct: 181 QLEEAGAKVSI 185

[Close]

BLAST of Tan0021936 vs. ExPASy Swiss-Prot
Match: P02398 (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 PE=1 SV=2)

HSP 1 Score: 207.2 bits (526), Expect = 1.6e-52
Identity = 133/195 (68.21%), Postives = 157/195 (80.51%), Query Frame = 0


Query: 1   MASTLSTLTTLRSPSHLSYSHSSFSTQSSKSTALQFPFNPSS---TVTSHRATHLRPIAA 60
           MA+T +T+ TL  PS    SH + ST       LQFPF  ++   +++S R T LRPIAA
Sbjct: 1   MAAT-TTMATLNLPS--LTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAA 60

Query: 61  VSAPEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAE 120
           V APEKIE+LG+ +S LTLEEAR+LVD+LQDKLGVSAA+FAPAA VAAPGA A    AA 
Sbjct: 61  VEAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPAD---AAP 120

Query: 121 AVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAED 180
           AVEEKTEFDV I++VPSNARI+VIKAVRALTSL LKEAKELIEGLPKK KEG+SK++AED
Sbjct: 121 AVEEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAED 180

Query: 181 AKKQLEEAGAKIAIV 193
           AKKQLE+AGAK++IV
Sbjct: 181 AKKQLEDAGAKVSIV 189

[Close]

BLAST of Tan0021936 vs. ExPASy Swiss-Prot
Match: P24929 (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.8e-52
Identity = 133/191 (69.63%), Postives = 155/191 (81.15%), Query Frame = 0


Query: 1   MASTLSTLTTLRSPSHLSYSHSSFSTQSSKSTALQFPFNPSSTVTSHRATHLRPIAAVSA 60
           MASTLST+ TLRSPS  + S +  S    K  AL+FP   +  +   RAT LRP+AAV A
Sbjct: 1   MASTLSTI-TLRSPSPSTASSTHASIPFPKK-ALEFPIR-TPKLHHRRATFLRPLAAVEA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVE 120
           PEK+ +LG +ISNLTL +A+ LV++LQDKLGV+AA+FAPAAV AAPGAAA    A   VE
Sbjct: 61  PEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAA---EAPAVVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDVVI++VPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEG+SK+EAEDAKK
Sbjct: 121 EKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKK 180

Query: 181 QLEEAGAKIAI 192
           QLEEAGAK++I
Sbjct: 181 QLEEAGAKVSI 185

[Close]

BLAST of Tan0021936 vs. ExPASy Swiss-Prot
Match: P36212 (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=2)

HSP 1 Score: 202.2 bits (513), Expect = 5.2e-51
Identity = 133/192 (69.27%), Postives = 158/192 (82.29%), Query Frame = 0


Query: 2   ASTLSTLTTLRSPSHLSYSHSSFSTQS--SKSTALQFPFNPSSTVTSHRATHLRPIAAVS 61
           ++TLS  TT+RS S L    +S ST    SK TA++FPF  SS+ +SHRA +LRPI+AV 
Sbjct: 3   STTLSIATTIRSSSPL----TSASTHHFLSKPTAIEFPFRLSSS-SSHRAINLRPISAVE 62

Query: 62  APEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAV 121
           APEKIEK+GS+IS+LTLEEAR+LVD+LQDK GVS  + APAA  AA  A A G AAA  V
Sbjct: 63  APEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAA--AAVAAPADGGAAA-VV 122

Query: 122 EEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 181
           EE+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+AK
Sbjct: 123 EEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAK 182

Query: 182 KQLEEAGAKIAI 192
           K LEEAGAK++I
Sbjct: 183 KTLEEAGAKVSI 186

[Close]

BLAST of Tan0021936 vs. ExPASy Swiss-Prot
Match: P36210 (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.2e-50
Identity = 129/193 (66.84%), Postives = 157/193 (81.35%), Query Frame = 0


Query: 2   ASTLSTLTTLRSPSHLSYSHSSFSTQSSKSTALQFPF---NPSSTVTSHRATHLRPIAAV 61
           ++TLS  TT+RS S+ +   +S +   S++T ++FP      SS+  +HRATHLRPIAAV
Sbjct: 3   STTLSIATTIRSSSYPTL--ASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIAAV 62

Query: 62  SAPEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEA 121
            APEKIEK+GS+IS+LTLEEAR+LVD+LQDK GVS  + APAA  AA  A A G AAA  
Sbjct: 63  EAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAA--AAVAAPADGGAAA-V 122

Query: 122 VEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDA 181
           VEE+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+A
Sbjct: 123 VEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEA 182

Query: 182 KKQLEEAGAKIAI 192
           KK LEEAGAK++I
Sbjct: 183 KKTLEEAGAKVSI 190

[Close]

BLAST of Tan0021936 vs. NCBI nr
Match: XP_023536532.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315.1 bits (806), Expect = 4.2e-82
Identity = 184/192 (95.83%), Postives = 188/192 (97.92%), Query Frame = 0


Query: 1   MASTLSTLTTLRSPSHLSYSHSSFSTQSSKSTALQFPFNPSSTVTSHRATHLRPIAAVSA 60
           MASTLSTLTTLRSP+HLSYSHSSFSTQSS ST LQFPFNPSST TSHRAT+LRPIAAVSA
Sbjct: 1   MASTLSTLTTLRSPTHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATYLRPIAAVSA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVE 120
           PEKIEKLG+DISNLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPGAAA GDAAAEAVE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAA-GDAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180

Query: 181 QLEEAGAKIAIV 193
           QLEEAGAKIAIV
Sbjct: 181 QLEEAGAKIAIV 191

[Close]

BLAST of Tan0021936 vs. NCBI nr
Match: XP_022960313.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita moschata] >KAG6602432.1 50S ribosomal protein L12-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 315.1 bits (806), Expect = 4.2e-82
Identity = 184/192 (95.83%), Postives = 187/192 (97.40%), Query Frame = 0


Query: 1   MASTLSTLTTLRSPSHLSYSHSSFSTQSSKSTALQFPFNPSSTVTSHRATHLRPIAAVSA 60
           MASTLSTLTTLRSP HLSYSHSSFSTQSS ST LQFPFNPSST TSHRAT+LRPIAAVSA
Sbjct: 1   MASTLSTLTTLRSPPHLSYSHSSFSTQSSTSTTLQFPFNPSSTATSHRATYLRPIAAVSA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVE 120
           PEKIEKLG+DISNLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPGAAA GDAAAEAVE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAA-GDAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180

Query: 181 QLEEAGAKIAIV 193
           QLEEAGAKIAIV
Sbjct: 181 QLEEAGAKIAIV 191

[Close]

BLAST of Tan0021936 vs. NCBI nr
Match: KAG7033112.1 (50S ribosomal protein L12-1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 314.3 bits (804), Expect = 7.2e-82
Identity = 184/192 (95.83%), Postives = 187/192 (97.40%), Query Frame = 0


Query: 1   MASTLSTLTTLRSPSHLSYSHSSFSTQSSKSTALQFPFNPSSTVTSHRATHLRPIAAVSA 60
           MASTLSTLTTLRSP HLSYSHSSFSTQSS ST LQFPFNPSST TSHRAT+LRPIAAVSA
Sbjct: 1   MASTLSTLTTLRSPPHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATYLRPIAAVSA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVE 120
           PEKIEKLG+DISNLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPGAAA GDAAAEAVE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAA-GDAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180

Query: 181 QLEEAGAKIAIV 193
           QLEEAGAKIAIV
Sbjct: 181 QLEEAGAKIAIV 191

[Close]

BLAST of Tan0021936 vs. NCBI nr
Match: XP_022989905.1 (50S ribosomal protein L12, chloroplastic [Cucurbita maxima])

HSP 1 Score: 308.9 bits (790), Expect = 3.0e-80
Identity = 182/192 (94.79%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 1   MASTLSTLTTLRSPSHLSYSHSSFSTQSSKSTALQFPFNPSSTVTSHRATHLRPIAAVSA 60
           MASTLSTLT+LRSP HLSYSHSSFSTQSS ST LQFPFNPSST TSHRAT LRPIAAVSA
Sbjct: 1   MASTLSTLTSLRSPLHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATLLRPIAAVSA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVE 120
           PEKIEKLG+DISNLTLEEAR+LVDFLQDKLGVSAAAFAPA VVAAPGAAA GDAAAEAVE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAVVVAAPGAAA-GDAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180

Query: 181 QLEEAGAKIAIV 193
           QLEEAGAKIAIV
Sbjct: 181 QLEEAGAKIAIV 191

[Close]

BLAST of Tan0021936 vs. NCBI nr
Match: XP_038890576.1 (50S ribosomal protein L12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 293.9 bits (751), Expect = 1.0e-75
Identity = 173/192 (90.10%), Postives = 178/192 (92.71%), Query Frame = 0


Query: 1   MASTLSTLTTLRSPSHLSYSHSSFSTQSSKSTALQFPFNPSSTVTSHRATHLRPIAAVSA 60
           MASTLS L TL SPSHLSYSHSS ST S KST LQFP + SS   SHRATHLRPIAA+SA
Sbjct: 1   MASTLSIL-TLHSPSHLSYSHSSLSTHSFKSTTLQFPSHLSSIAVSHRATHLRPIAAISA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVE 120
           PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAA+FAPAAVVAAPG  AGG+AAAEAVE
Sbjct: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAASFAPAAVVAAPGGTAGGEAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEG+SKEEAEDAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 180

Query: 181 QLEEAGAKIAIV 193
           QLEEAGAKIAIV
Sbjct: 181 QLEEAGAKIAIV 191

[Close]

BLAST of Tan0021936 vs. ExPASy TrEMBL
Match: A0A6J1H8H9 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111461079 PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 2.0e-82
Identity = 184/192 (95.83%), Postives = 187/192 (97.40%), Query Frame = 0


Query: 1   MASTLSTLTTLRSPSHLSYSHSSFSTQSSKSTALQFPFNPSSTVTSHRATHLRPIAAVSA 60
           MASTLSTLTTLRSP HLSYSHSSFSTQSS ST LQFPFNPSST TSHRAT+LRPIAAVSA
Sbjct: 1   MASTLSTLTTLRSPPHLSYSHSSFSTQSSTSTTLQFPFNPSSTATSHRATYLRPIAAVSA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVE 120
           PEKIEKLG+DISNLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPGAAA GDAAAEAVE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGAAA-GDAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180

Query: 181 QLEEAGAKIAIV 193
           QLEEAGAKIAIV
Sbjct: 181 QLEEAGAKIAIV 191

[Close]

BLAST of Tan0021936 vs. ExPASy TrEMBL
Match: A0A6J1JNN0 (50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486956 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.5e-80
Identity = 182/192 (94.79%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 1   MASTLSTLTTLRSPSHLSYSHSSFSTQSSKSTALQFPFNPSSTVTSHRATHLRPIAAVSA 60
           MASTLSTLT+LRSP HLSYSHSSFSTQSS ST LQFPFNPSST TSHRAT LRPIAAVSA
Sbjct: 1   MASTLSTLTSLRSPLHLSYSHSSFSTQSSISTTLQFPFNPSSTATSHRATLLRPIAAVSA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVE 120
           PEKIEKLG+DISNLTLEEAR+LVDFLQDKLGVSAAAFAPA VVAAPGAAA GDAAAEAVE
Sbjct: 61  PEKIEKLGADISNLTLEEARILVDFLQDKLGVSAAAFAPAVVVAAPGAAA-GDAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK
Sbjct: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180

Query: 181 QLEEAGAKIAIV 193
           QLEEAGAKIAIV
Sbjct: 181 QLEEAGAKIAIV 191

[Close]

BLAST of Tan0021936 vs. ExPASy TrEMBL
Match: A0A6J1BXR2 (50S ribosomal protein L12, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111006430 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 5.1e-73
Identity = 175/193 (90.67%), Postives = 179/193 (92.75%), Query Frame = 0


Query: 1   MASTLSTLTTLRSPSHLSYSHSSFSTQSSKSTALQFPFNPSSTVT-SHRATHLRPIAAVS 60
           MASTLSTL TLRSPS+LS+S  S ST SSKS A+QFPF PSS    SHRAT LRPIAAVS
Sbjct: 1   MASTLSTL-TLRSPSYLSHSPRSISTHSSKS-AVQFPFYPSSAAAISHRATLLRPIAAVS 60

Query: 61  APEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAV 120
           APEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAA  GDAAAEAV
Sbjct: 61  APEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAGAGDAAAEAV 120

Query: 121 EEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEG+SKEEAEDAK
Sbjct: 121 EEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAK 180

Query: 181 KQLEEAGAKIAIV 193
           KQLEEAGAKIAIV
Sbjct: 181 KQLEEAGAKIAIV 191

[Close]

BLAST of Tan0021936 vs. ExPASy TrEMBL
Match: A0A6J1JTI3 (50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489595 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.8e-70
Identity = 166/192 (86.46%), Postives = 173/192 (90.10%), Query Frame = 0


Query: 1   MASTLSTLTTLRSPSHLSYSHSSFSTQSSKSTALQFPFNPSSTVTSHRATHLRPIAAVSA 60
           MASTLSTL TLR+PS LS+SHSSFST SSK T L FP        SHRAT LRPIAAVSA
Sbjct: 1   MASTLSTL-TLRTPSLLSHSHSSFSTLSSKPTTLPFP--------SHRATRLRPIAAVSA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVE 120
           PEKIEKLGSDISNLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPG  AGGD AAEAVE
Sbjct: 61  PEKIEKLGSDISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDVAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDVVIE+VPSNARIAVIK+VRALT+LALKEAKELIEGLPKKFKEG+SKEEAEDAKK
Sbjct: 121 EKTEFDVVIEEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 180

Query: 181 QLEEAGAKIAIV 193
           QLEEAGAKI IV
Sbjct: 181 QLEEAGAKITIV 183

[Close]

BLAST of Tan0021936 vs. ExPASy TrEMBL
Match: A0A6J1FMH9 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445547 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.5e-69
Identity = 165/192 (85.94%), Postives = 172/192 (89.58%), Query Frame = 0


Query: 1   MASTLSTLTTLRSPSHLSYSHSSFSTQSSKSTALQFPFNPSSTVTSHRATHLRPIAAVSA 60
           MASTLSTL TLR+PS LS+SHSSFST SSK T L F         SHR T LRPIAAVSA
Sbjct: 1   MASTLSTL-TLRTPSLLSHSHSSFSTLSSKPTTLPF--------LSHRTTRLRPIAAVSA 60

Query: 61  PEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAVE 120
           PEKIEKLGSDISNLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPG  AGGDAAAEAVE
Sbjct: 61  PEKIEKLGSDISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           EKTEFDVVIE+VPSNARIAVIK+VRALT+LALKEAKELIEGLPKKFKEG+SKEEAEDAKK
Sbjct: 121 EKTEFDVVIEEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 180

Query: 181 QLEEAGAKIAIV 193
           QLEEAGAKI IV
Sbjct: 181 QLEEAGAKITIV 183

[Close]

BLAST of Tan0021936 vs. TAIR 10
Match: AT3G27850.1 (ribosomal protein L12-C )

HSP 1 Score: 202.2 bits (513), Expect = 3.7e-52
Identity = 133/192 (69.27%), Postives = 158/192 (82.29%), Query Frame = 0


Query: 2   ASTLSTLTTLRSPSHLSYSHSSFSTQS--SKSTALQFPFNPSSTVTSHRATHLRPIAAVS 61
           ++TLS  TT+RS S L    +S ST    SK TA++FPF  SS+ +SHRA +LRPI+AV 
Sbjct: 3   STTLSIATTIRSSSPL----TSASTHHFLSKPTAIEFPFRLSSS-SSHRAINLRPISAVE 62

Query: 62  APEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEAV 121
           APEKIEK+GS+IS+LTLEEAR+LVD+LQDK GVS  + APAA  AA  A A G AAA  V
Sbjct: 63  APEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAA--AAVAAPADGGAAA-VV 122

Query: 122 EEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 181
           EE+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+AK
Sbjct: 123 EEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAK 182

Query: 182 KQLEEAGAKIAI 192
           K LEEAGAK++I
Sbjct: 183 KTLEEAGAKVSI 186

[Close]

BLAST of Tan0021936 vs. TAIR 10
Match: AT3G27830.1 (ribosomal protein L12-A )

HSP 1 Score: 201.1 bits (510), Expect = 8.3e-52
Identity = 129/193 (66.84%), Postives = 157/193 (81.35%), Query Frame = 0


Query: 2   ASTLSTLTTLRSPSHLSYSHSSFSTQSSKSTALQFPF---NPSSTVTSHRATHLRPIAAV 61
           ++TLS  TT+RS S+ +   +S +   S++T ++FP      SS+  +HRATHLRPIAAV
Sbjct: 3   STTLSIATTIRSSSYPTL--ASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIAAV 62

Query: 62  SAPEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEA 121
            APEKIEK+GS+IS+LTLEEAR+LVD+LQDK GVS  + APAA  AA  A A G AAA  
Sbjct: 63  EAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAA--AAVAAPADGGAAA-V 122

Query: 122 VEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDA 181
           VEE+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+A
Sbjct: 123 VEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEA 182

Query: 182 KKQLEEAGAKIAI 192
           KK LEEAGAK++I
Sbjct: 183 KKTLEEAGAKVSI 190

[Close]

BLAST of Tan0021936 vs. TAIR 10
Match: AT3G27840.1 (ribosomal protein L12-B )

HSP 1 Score: 168.7 bits (426), Expect = 4.6e-42
Identity = 109/194 (56.19%), Postives = 141/194 (72.68%), Query Frame = 0


Query: 2   ASTLSTLTTLRSPSHLSYSHSSFSTQSSKSTALQFPFN---PSSTVTSHRATHLRPIAAV 61
           A+TLS  TT+RS S  S   +S     S+  +++FPF+    SS+  SHRA +L PI+AV
Sbjct: 3   ATTLSIATTIRS-SSFSSGLASAHHFPSRPLSIEFPFSFGVSSSSTLSHRAIYLHPISAV 62

Query: 62  SAPEKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAAGGDAAAEA 121
             P+KI+K+GS+IS+LTLEE+R+LVD++QDK GVS    APAA    P    GG  A  +
Sbjct: 63  KTPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSILFSAPAAAALPPPLDNGG--ATAS 122

Query: 122 VEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDA 181
           VE +T FDVVI DVP   RIAVI A+RA+TSL+L E+KELIEG PKKFKEG++K+EAE+ 
Sbjct: 123 VERQTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEED 182

Query: 182 KKQLEEAGAKIAIV 193
           K QLEEAGAK++IV
Sbjct: 183 KTQLEEAGAKVSIV 193

[Close]

BLAST of Tan0021936 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 82.0 bits (201), Expect = 5.6e-16
Identity = 56/136 (41.18%), Postives = 85/136 (62.50%), Query Frame = 0


Query: 62  EKIEKLGSDISNLTLEEARLLVDFLQDKLGVS----AAAFAPAAVVAAPGA--AAGGDAA 121
           E + K+ +++SNLTL E   L + L+ KL +S     AA  P   +   GA  +AGG+  
Sbjct: 43  ENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGASKSAGGEGK 102

Query: 122 AEAVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEA 181
            +  E KT FDV+++   + ++I VIK VR +T+L LKEAK+L+E  P   K+G+SKEEA
Sbjct: 103 EKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGVSKEEA 162

Query: 182 EDAKKQLEEAGAKIAI 192
           E   ++L+  GAK+A+
Sbjct: 163 EKIIEKLKAVGAKVAM 178

[Close]

BLAST of Tan0021936 vs. TAIR 10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 64.7 bits (156), Expect = 9.3e-11
Identity = 56/154 (36.36%), Postives = 81/154 (52.60%), Query Frame = 0


Query: 47  HRATHL----RPIAAVSAPE----KIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFA 106
           HR T L    R + AV++PE    K+E++  D+  L   E          K+G++    A
Sbjct: 17  HRTTPLSSATRHLCAVASPEARTKKLERIADDLLKLNRIELYDYSLLFSHKIGLNRYGSA 76

Query: 107 PAAVVAAPGAAAGGDAAAEA-VEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKE 166
               VA  G+     A+ E    EKT FDV +E   + ++I VIK +RA T L LKEAK 
Sbjct: 77  ----VAVTGSVGDASASTETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKA 136

Query: 167 LIEGLPKKFKEGISKEEAEDAKKQLEEAGAKIAI 192
           L+E  P   K G++KEEAE   ++L+  GA +A+
Sbjct: 137 LVEKAPVIVKNGLTKEEAEKIMEKLKAVGAIVAL 166

The following BLAST results are available for this feature:

BLAST of Tan0021936 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P36688	9.6e-53	69.63	50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV...	[more]
P02398	1.6e-52	68.21	50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 P...	[more]
P24929	2.8e-52	69.63	50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 P...	[more]
P36212	5.2e-51	69.27	50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
P36210	1.2e-50	66.84	50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]

BLAST of Tan0021936 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536532.1	4.2e-82	95.83	50S ribosomal protein L12, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022960313.1	4.2e-82	95.83	50S ribosomal protein L12, chloroplastic-like [Cucurbita moschata] >KAG6602432.1...	[more]
KAG7033112.1	7.2e-82	95.83	50S ribosomal protein L12-1, chloroplastic, partial [Cucurbita argyrosperma subs...	[more]
XP_022989905.1	3.0e-80	94.79	50S ribosomal protein L12, chloroplastic [Cucurbita maxima]	[more]
XP_038890576.1	1.0e-75	90.10	50S ribosomal protein L12, chloroplastic-like [Benincasa hispida]	[more]

BLAST of Tan0021936 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8H9	2.0e-82	95.83	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1JNN0	1.5e-80	94.79	50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1BXR2	5.1e-73	90.67	50S ribosomal protein L12, chloroplastic-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1JTI3	1.8e-70	86.46	50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FMH9	1.5e-69	85.94	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Tan0021936 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27850.1	3.7e-52	69.27	ribosomal protein L12-C	[more]
AT3G27830.1	8.3e-52	66.84	ribosomal protein L12-A	[more]
AT3G27840.1	4.6e-42	56.19	ribosomal protein L12-B	[more]
AT4G36420.1	5.6e-16	41.18	Ribosomal protein L12 family protein	[more]
AT4G37660.1	9.3e-11	36.36	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000206	Ribosomal protein L7/L12	TIGRFAM	TIGR00855	TIGR00855	coord: 63..191 e-value: 7.1E-33 score: 111.7
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 1..191
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 59..192 score: 22.756586
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 62..191 e-value: 5.7299E-41 score: 133.05
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	GENE3D	1.20.5.710	Single helix bin	coord: 63..120 e-value: 1.2E-13 score: 52.8
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 63..127
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 121..191 e-value: 9.2E-26 score: 91.8
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 120..191
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 125..191 e-value: 4.2E-24 score: 84.7
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 63..111 e-value: 2.6E-13 score: 49.4
None	No IPR available	PANTHER	PTHR45987:SF16	50S RIBOSOMAL PROTEIN L12-1, CHLOROPLASTIC-RELATED	coord: 1..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0021936.1	Tan0021936.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome