Tan0021821 (gene) Snake gourd v1

Overview


Name	Tan0021821
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Oxidative stress 3
Location	LG02: 7437500 .. 7438476 (-)
RNA-Seq Expression	Tan0021821
Synteny	Tan0021821

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATGAAGGAAACAGCATGATGGTTTTTGATATGGGTTCTCTTAGGACAAATCTTCCTCAAAAGTAAGGAATTTTGGTCTACTTTCTTCCATTAGACATAAATTTTGATTATTATTATTATTTGTTTTTAGTAAATTCCAACCTTCTTTTTGGTCATAAGTTATACTTGATCTCAGTTGAGTTATGCATATAAATTTTGATTACTGCAAATACTTTTTTAGGTTTATTTTTTTGTTAGATTGATACTTATTTCGTATGGTCTTGAATTTGCAGTGACGAAGACTAGATAGATTCATACCTATATTTGTTAATAGGTTCAAGTGTTTCAATTTTGTCCTGTGAATATAGTTTTAGTAAACATATTGTGAAAAGTAACGTCTTACATTTGTCGAATGCATTTTATAGAGAACTACTAGTACATAATCCAATTTTAAAATACCATCTTCTTTTTATGTGGGGTTTGTTTTTTTTTCTTCTTGTTGGACAATTTGCTAACAAGTTTTTTGTTTTTTCATAATTTCTTTATTGTGATATTCACATTTCCTAAACAAACATGTCAATCCTCAGACTAATTGTAAAAAAAAAAAAAACAAAATTTTAAACAACAAAAAGCAAAGATCTCAATTTGATAACTAATTGGTTTTTGAAAAGTAAGCGTATAAAACAGTTCTGCATGATTATCAAACGGGACGATAATAAATGAGAAACCGTTATGAATTATCGATTAACAACGTTTGATGATCGTGTTCGAGTATATATAGGAGGGGTTTGTCAAGGTACTATTCAGGGAAAGCAAGGTCATTTGCTTGCATAGCTGATGTTCGATGTGTAGAAGATTTGAAGAAACCAAAACATCCAGATGCCAAGAAAAGGAAGAAACATTCTGATTGCAAAGAAATTCATGGTCATCCTTATCACTGTCGAAGAGTTTCAAGTAGTTCTCATTCTTCCATTCCATTCTTTGCTGCATGA

mRNA sequence

ATGGAGGATGAAGGAAACAGCATGATGGTTTTTGATATGGGTTCTCTTAGGACAAATCTTCCTCAAAAGAGGGGTTTGTCAAGGTACTATTCAGGGAAAGCAAGGTCATTTGCTTGCATAGCTGATGTTCGATGTGTAGAAGATTTGAAGAAACCAAAACATCCAGATGCCAAGAAAAGGAAGAAACATTCTGATTGCAAAGAAATTCATGGTCATCCTTATCACTGTCGAAGAGTTTCAAGTAGTTCTCATTCTTCCATTCCATTCTTTGCTGCATGA

Coding sequence (CDS)

ATGGAGGATGAAGGAAACAGCATGATGGTTTTTGATATGGGTTCTCTTAGGACAAATCTTCCTCAAAAGAGGGGTTTGTCAAGGTACTATTCAGGGAAAGCAAGGTCATTTGCTTGCATAGCTGATGTTCGATGTGTAGAAGATTTGAAGAAACCAAAACATCCAGATGCCAAGAAAAGGAAGAAACATTCTGATTGCAAAGAAATTCATGGTCATCCTTATCACTGTCGAAGAGTTTCAAGTAGTTCTCATTCTTCCATTCCATTCTTTGCTGCATGA

Protein sequence

MEDEGNSMMVFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKRKKHSDCKEIHGHPYHCRRVSSSSHSSIPFFAA

Homology

[Close]

BLAST of Tan0021821 vs. NCBI nr
Match: KAG6588432.1 (hypothetical protein SDJN03_16997, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.5 bits (384), Expect = 1.7e-33
Identity = 74/92 (80.43%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MEDEGNSMMVFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKR 60
          M+D+GN+MM FDM SL  NLPQKRGLSRYYSGKARSFACIAD RCVEDLKKP HPDAKKR
Sbjct: 1  MKDQGNNMMAFDMSSLGANLPQKRGLSRYYSGKARSFACIADARCVEDLKKPTHPDAKKR 60

Query: 61 KKHSDCKEIHGHPYHCRRVSSSSHSSIPFFAA 93
          KKHSDCK IH  P+HCRR +SS+H SIPFFA+
Sbjct: 61 KKHSDCKGIHVSPHHCRR-ASSTHCSIPFFAS 91

[Close]

BLAST of Tan0021821 vs. NCBI nr
Match: KGN43154.1 (hypothetical protein Csa_020555 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 6.6e-33
Identity = 78/93 (83.87%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 1  MEDEGNSMMVFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKR 60
          MED+GNSMM FDMGSLRTNLPQKRGLSRYYSGKARSFACIADVR VEDLKKPKHPDAKKR
Sbjct: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60

Query: 61 KKHSDCKE--IHGHPYHCRRVSSSSHSSIPFFA 92
          KKHSD KE  I+  P+HCRRV  SSH S+PF A
Sbjct: 61 KKHSDIKEIIINVPPFHCRRV--SSHCSVPFIA 91

[Close]

BLAST of Tan0021821 vs. NCBI nr
Match: KAA0033797.1 (hypothetical protein E6C27_scaffold142G00550 [Cucumis melo var. makuwa] >TYK22337.1 hypothetical protein E5676_scaffold1428G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 5.2e-30
Identity = 72/85 (84.71%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 8  MMVFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKRKKHSDCK 67
          MM FDMGSLRTNLPQKRGLSRYYSGKARSFACIADVR VEDLKKPKHPDAKKRKKHSDCK
Sbjct: 1  MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDCK 60

Query: 68 EI-HGHPYHCRRVSSSSHSSIPFFA 92
          EI +  P+HCRR  +SSH S+PF A
Sbjct: 61 EITNVPPFHCRR--ASSHCSVPFIA 83

[Close]

BLAST of Tan0021821 vs. NCBI nr
Match: KAF3435745.1 (hypothetical protein FNV43_RR22837 [Rhamnella rubrinervis])

HSP 1 Score: 124.4 bits (311), Expect = 5.1e-25
Identity = 60/83 (72.29%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 7  SMMVFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKRKKHSDC 66
          +M  FDMGSLRTNLP KRGLSRYYSGK+RSF C+ADV C+EDLKKP+HPDAKKRKKHSD 
Sbjct: 8  AMRTFDMGSLRTNLPLKRGLSRYYSGKSRSFTCMADVHCLEDLKKPEHPDAKKRKKHSDR 67

Query: 67 KEIHGHPYHCRRVSSSSHSSIPF 90
          K+I    Y CRRVSSS+  + P+
Sbjct: 68 KDIRVPHYPCRRVSSSTQCTTPY 90

[Close]

BLAST of Tan0021821 vs. NCBI nr
Match: EOX97931.1 (Uncharacterized protein TCM_006830 [Theobroma cacao])

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-24
Identity = 64/89 (71.91%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 1  MEDEGNSMMVFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKR 60
          MED+      FDMG+LR+NLPQKRGLSRYYSGKARSFACIADVRCVEDLKK +HPDAKKR
Sbjct: 1  MEDQ-TEKRAFDMGALRSNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKQEHPDAKKR 60

Query: 61 KKHSDCKEIHGH-PYHCRRVSSSSHSSIP 89
          KK+S+ KE+  + PY CRRVSS +H + P
Sbjct: 61 KKYSNKKEMQLYTPYPCRRVSSCTHCAAP 88

[Close]

BLAST of Tan0021821 vs. ExPASy TrEMBL
Match: A0A0A0K2B1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004070 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.2e-33
Identity = 78/93 (83.87%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 1  MEDEGNSMMVFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKR 60
          MED+GNSMM FDMGSLRTNLPQKRGLSRYYSGKARSFACIADVR VEDLKKPKHPDAKKR
Sbjct: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60

Query: 61 KKHSDCKE--IHGHPYHCRRVSSSSHSSIPFFA 92
          KKHSD KE  I+  P+HCRRV  SSH S+PF A
Sbjct: 61 KKHSDIKEIIINVPPFHCRRV--SSHCSVPFIA 91

[Close]

BLAST of Tan0021821 vs. ExPASy TrEMBL
Match: A0A5A7SX13 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00540 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.5e-30
Identity = 72/85 (84.71%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 8  MMVFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKRKKHSDCK 67
          MM FDMGSLRTNLPQKRGLSRYYSGKARSFACIADVR VEDLKKPKHPDAKKRKKHSDCK
Sbjct: 1  MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDCK 60

Query: 68 EI-HGHPYHCRRVSSSSHSSIPFFA 92
          EI +  P+HCRR  +SSH S+PF A
Sbjct: 61 EITNVPPFHCRR--ASSHCSVPFIA 83

[Close]

BLAST of Tan0021821 vs. ExPASy TrEMBL
Match: A0A061E0R1 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_006830 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.5e-25
Identity = 64/89 (71.91%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 1  MEDEGNSMMVFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKR 60
          MED+      FDMG+LR+NLPQKRGLSRYYSGKARSFACIADVRCVEDLKK +HPDAKKR
Sbjct: 1  MEDQ-TEKRAFDMGALRSNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKQEHPDAKKR 60

Query: 61 KKHSDCKEIHGH-PYHCRRVSSSSHSSIP 89
          KK+S+ KE+  + PY CRRVSS +H + P
Sbjct: 61 KKYSNKKEMQLYTPYPCRRVSSCTHCAAP 88

[Close]

BLAST of Tan0021821 vs. ExPASy TrEMBL
Match: A0A2I4E7G8 (uncharacterized protein LOC108986971 isoform X2 OS=Juglans regia OX=51240 GN=LOC108986971 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.3e-23
Identity = 58/89 (65.17%), Postives = 75/89 (84.27%), Query Frame = 0


Query: 1   MEDEGNSMMVFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKR 60
           ME++  SM  FDM +L+TNLPQKRGLSRYYSGK+R+F C+ADVRC+EDLKKP+HP+AKKR
Sbjct: 27  MENDIVSMRTFDMDALKTNLPQKRGLSRYYSGKSRTFTCMADVRCLEDLKKPEHPEAKKR 86

Query: 61  KKHSDCKEIHGHPYHCRRVSSSSHSSIPF 90
           KK+S+ K+I+  P  CRRVSSS+  + P+
Sbjct: 87  KKYSERKDINHSP--CRRVSSSTQCATPY 113

[Close]

BLAST of Tan0021821 vs. ExPASy TrEMBL
Match: A0A5J5BWF1 (Protein kinase domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_020542 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.8e-23
Identity = 58/89 (65.17%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 1   MEDEGNSMMVFDMGSLRTNLPQ-KRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKK 60
           ME + ++M +FDMG+LRTNLPQ +RGLSRYYSGK+RSF C+ADV C+EDLKK ++PDAKK
Sbjct: 858 MEKQTDNMRIFDMGALRTNLPQNRRGLSRYYSGKSRSFVCMADVHCLEDLKKEENPDAKK 917

Query: 61  RKKHSDCKEIHGHPYHCRRVSSSSHSSIP 89
           RKK SD K +H  P+ CRR+SSSS  + P
Sbjct: 918 RKKQSDRKGMHIQPFSCRRISSSSQFATP 946

[Close]

BLAST of Tan0021821 vs. TAIR 10
Match: AT5G56550.1 (oxidative stress 3 )

HSP 1 Score: 45.8 bits (107), Expect = 2.1e-05
Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 12  DMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKK 52
           D+  L ++LP KRGLS++Y GK++SF  + +V+ +EDL K
Sbjct: 77  DLSDLMSHLPIKRGLSKFYEGKSQSFTSLGNVKSLEDLMK 116

[Close]

BLAST of Tan0021821 vs. TAIR 10
Match: AT5G24890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 2.1e-05
Identity = 20/49 (40.82%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 13  MGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKRK 62
           M SL  +LP KRGLS +Y GK++SF  + ++  V+++ K ++P  K+R+
Sbjct: 98  MSSLEDSLPSKRGLSNHYKGKSKSFGNLGEIGSVKEVAKQENPLNKRRR 146

[Close]

BLAST of Tan0021821 vs. TAIR 10
Match: AT3G03170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24890.1); Has 184 Blast hits to 184 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 2.8e-05
Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 23  KRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKRKKHSDCKEIHGHPYHCRRVSSS 82
           +RGLS++Y GK++SF  +A+   VEDL KP++P   K K+  +         HCRR+S  
Sbjct: 56  RRGLSKHYKGKSQSFTTLAEALTVEDLAKPENPFNAKLKQRRESP-------HCRRLSGC 112

Query: 83  SHSS 87
             +S
Sbjct: 116 GGAS 112

[Close]

BLAST of Tan0021821 vs. TAIR 10
Match: AT5G21940.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 6.9e-04
Identity = 20/57 (35.09%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 13  MGSLRTNLPQKRGLSRYYSGKARSF--------ACIADVRCVEDLKKPKHPDAKKRK 62
           M SL   LP ++G+S+YYSGK++SF        + +     ++DL KP++P +++R+
Sbjct: 78  MESLEQVLPVRKGISKYYSGKSKSFTNLTAEAASALTSSSSMKDLAKPENPYSRRRR 134

The following BLAST results are available for this feature:

BLAST of Tan0021821 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0021821 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588432.1	1.7e-33	80.43	hypothetical protein SDJN03_16997, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN43154.1	6.6e-33	83.87	hypothetical protein Csa_020555 [Cucumis sativus]	[more]
KAA0033797.1	5.2e-30	84.71	hypothetical protein E6C27_scaffold142G00550 [Cucumis melo var. makuwa] >TYK2233...	[more]
KAF3435745.1	5.1e-25	72.29	hypothetical protein FNV43_RR22837 [Rhamnella rubrinervis]	[more]
EOX97931.1	1.1e-24	71.91	Uncharacterized protein TCM_006830 [Theobroma cacao]	[more]

BLAST of Tan0021821 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2B1	3.2e-33	83.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004070 PE=4 SV=1	[more]
A0A5A7SX13	2.5e-30	84.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A061E0R1	5.5e-25	71.91	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_006830 PE=4 SV=1	[more]
A0A2I4E7G8	1.3e-23	65.17	uncharacterized protein LOC108986971 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]
A0A5J5BWF1	1.8e-23	65.17	Protein kinase domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_02...	[more]

BLAST of Tan0021821 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56550.1	2.1e-05	47.50	oxidative stress 3	[more]
AT5G24890.1	2.1e-05	40.82	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G03170.1	2.8e-05	39.06	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G21940.1	6.9e-04	35.09	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33172	OS08G0516900 PROTEIN	coord: 5..86
None	No IPR available	PANTHER	PTHR33172:SF38	BNAA01G05330D PROTEIN	coord: 5..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0021821.1	Tan0021821.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity