Tan0021693 (gene) Snake gourd v1

Overview


Name	Tan0021693
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RING-type domain-containing protein
Location	LG01: 15880107 .. 15880328 (+)
RNA-Seq Expression	Tan0021693
Synteny	Tan0021693

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGGAGAAATTGACGAAGCCATCGGTAGATTATGATTACGATGAGAATGACGAATCGACATCGGAGACGAGTGAATGTGCGATATGTTTGGAGGAGTTTGGGGATAGAGTTTCATGCCGAGTTTTTCCCAATTGCAAGCATATGTTTCATACGCATTGCATAATCAGTTGGTTAGGGATTAATCAAACATGTCCCATATGTAGGACTCAATTGTAG

mRNA sequence

ATGGCGATGGAGAAATTGACGAAGCCATCGGTAGATTATGATTACGATGAGAATGACGAATCGACATCGGAGACGAGTGAATGTGCGATATGTTTGGAGGAGTTTGGGGATAGAGTTTCATGCCGAGTTTTTCCCAATTGCAAGCATATGTTTCATACGCATTGCATAATCAGTTGGTTAGGGATTAATCAAACATGTCCCATATGTAGGACTCAATTGTAG

Coding sequence (CDS)

ATGGCGATGGAGAAATTGACGAAGCCATCGGTAGATTATGATTACGATGAGAATGACGAATCGACATCGGAGACGAGTGAATGTGCGATATGTTTGGAGGAGTTTGGGGATAGAGTTTCATGCCGAGTTTTTCCCAATTGCAAGCATATGTTTCATACGCATTGCATAATCAGTTGGTTAGGGATTAATCAAACATGTCCCATATGTAGGACTCAATTGTAG

Protein sequence

MAMEKLTKPSVDYDYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL

Homology

[Close]

BLAST of Tan0021693 vs. ExPASy Swiss-Prot
Match: Q8LF65 (RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 9.1e-12
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 27  ECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL 74
           EC++CL EF D  S RV PNCKH FH HCI  W   + +CP+CR+Q+
Sbjct: 75  ECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCRSQI 121

[Close]

BLAST of Tan0021693 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-11
Identity = 29/68 (42.65%), Postives = 38/68 (55.88%), Query Frame = 0


Query: 15  YDEND---------ESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQT 74
           YD+ND         E    + EC++CL EF D    R+ PNC H+FH  CI  WL  N  
Sbjct: 116 YDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNAN 175

[Close]

BLAST of Tan0021693 vs. ExPASy Swiss-Prot
Match: Q8RXX9 (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 5.9e-11
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 27  ECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL 74
           ECAICL EF D  + R+ P C H+FH HCI +WL  + TCP+CR  L
Sbjct: 127 ECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANL 173

[Close]

BLAST of Tan0021693 vs. ExPASy Swiss-Prot
Match: Q9C919 (Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana OX=3702 GN=ATL19 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-10
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 14  DYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL 73
           +++E++E + E+ ECAICL  +     CRVFP C+H++H  CI +WL  + TCP CR  L
Sbjct: 116 NHEEDEEKSLESRECAICLSGYVVNEECRVFPVCRHIYHALCIDAWLKNHLTCPTCRKDL 175

[Close]

BLAST of Tan0021693 vs. ExPASy Swiss-Prot
Match: Q8LGA5 (E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-10
Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 0


Query: 7   TKPSVDYDYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTC 66
           T P+  Y   +  +      ECAICL EF D  + R+ P C H+FH HCI +WL  + TC
Sbjct: 103 TFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTC 162

Query: 67  PICRTQL 74
           P+CRT L
Sbjct: 163 PVCRTNL 169

[Close]

BLAST of Tan0021693 vs. NCBI nr
Match: XP_011652743.1 (uncharacterized protein LOC105435076 [Cucumis sativus] >KGN56259.2 hypothetical protein Csa_011552 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 9.6e-27
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MAMEKLTKPSVDYDYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWL 60
           MAMEKLTKPS  Y+ +ENDES S  SEC ICLE+ G+RVSCRVFPNCKH+FHTHCII+WL
Sbjct: 196 MAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNCKHIFHTHCIINWL 255

Query: 61  GINQTCPICRTQL 74
            INQTCPICRT+L
Sbjct: 256 EINQTCPICRTKL 268

[Close]

BLAST of Tan0021693 vs. NCBI nr
Match: KAG6577374.1 (RING-H2 finger protein ATL8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.7 bits (317), Expect = 8.1e-26
Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MAMEKLTKPSVDYDYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWL 60
           +AMEKLTKPS +YDY++++E+ S  S+CAICLEEF +   CRVFPNCKHMFHTHCI+ WL
Sbjct: 71  IAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHMFHTHCIVRWL 130

Query: 61  GINQTCPICRTQL 74
           GINQTCP+CRTQL
Sbjct: 131 GINQTCPVCRTQL 143

[Close]

BLAST of Tan0021693 vs. NCBI nr
Match: XP_023545744.1 (RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 121.7 bits (304), Expect = 2.6e-24
Identity = 57/74 (77.03%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 2   AMEKLTKPSVDYDYDENDEST--SETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISW 61
           AMEKLT P VDY   END     SE +ECAICLE FG+RVSCRVFPNCKHMFHTHCII W
Sbjct: 89  AMEKLTMPLVDYGCKENDGEVAGSELNECAICLEAFGNRVSCRVFPNCKHMFHTHCIIKW 148

Query: 62  LGINQTCPICRTQL 74
           LGIN TCPICRT L
Sbjct: 149 LGINLTCPICRTHL 162

[Close]

BLAST of Tan0021693 vs. NCBI nr
Match: KAG7031368.1 (RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.9 bits (302), Expect = 4.5e-24
Identity = 56/73 (76.71%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 3   MEKLTKPSVDYDYDEND--ESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWL 62
           MEKLT P VDY   END   ++SE +ECAICLE FG+RVSCRVFPNCKHMFHTHCII WL
Sbjct: 234 MEKLTMPLVDYGCKENDGEVASSELNECAICLEAFGNRVSCRVFPNCKHMFHTHCIIKWL 293

Query: 63  GINQTCPICRTQL 74
           GIN TCPICRT L
Sbjct: 294 GINLTCPICRTHL 306

[Close]

BLAST of Tan0021693 vs. NCBI nr
Match: KAG6600728.1 (putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.9 bits (302), Expect = 4.5e-24
Identity = 56/73 (76.71%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 3   MEKLTKPSVDYDYDEND--ESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWL 62
           MEKLT P VDY   END   ++SE +ECAICLE FG+RVSCRVFPNCKHMFHTHCII WL
Sbjct: 73  MEKLTMPLVDYGCKENDGEVASSELNECAICLEAFGNRVSCRVFPNCKHMFHTHCIIKWL 132

Query: 63  GINQTCPICRTQL 74
           GIN TCPICRT L
Sbjct: 133 GINLTCPICRTHL 145

[Close]

BLAST of Tan0021693 vs. ExPASy TrEMBL
Match: A0A0A0L7Y8 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104940 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.7e-24
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MAMEKLTKPSVDYDYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWL 60
          MAMEKLTKPS  Y+ +ENDES S  SEC ICLE+ G+RVSCRVFPNCKH+FHTHCII+WL
Sbjct: 14 MAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNCKHIFHTHCIINWL 73

Query: 61 GINQTCPI 69
           INQTCPI
Sbjct: 74 EINQTCPI 81

[Close]

BLAST of Tan0021693 vs. ExPASy TrEMBL
Match: A0A2I0VD18 (RING-H2 finger protein ATL32 OS=Dendrobium catenatum OX=906689 GN=ATL32 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 9   PSVDYDYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPI 68
           PS+ YD +E+ +   + S CAICLE+F D   CR  P C H+FH HC+  WL    TCPI
Sbjct: 60  PSIRYDEEESGKQCGKASSCAICLEKFNDGELCRQLPACSHLFHIHCVDLWLKEKLTCPI 119

Query: 69  CRTQL 74
           CRT +
Sbjct: 120 CRTAI 124

[Close]

BLAST of Tan0021693 vs. ExPASy TrEMBL
Match: A0A6P4BX25 (E3 ubiquitin-protein ligase RING1-like OS=Arachis duranensis OX=130453 GN=LOC107462572 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.1e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 15  YDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRT 72
           Y  +D + S   ECAIC+E+F D   C+VFP CKHM+H++CI +WL  N TCPICR+
Sbjct: 104 YGMHDTTNSHCDECAICMEDFEDGQYCQVFPKCKHMYHSNCIDTWLQKNPTCPICRS 160

[Close]

BLAST of Tan0021693 vs. ExPASy TrEMBL
Match: A0A444Y4F4 (RING-type domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g092657 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.7e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 15  YDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRT 72
           Y  +D + S   ECAIC+E+F D   C+VFP CKHM+H++CI +WL  N TCPICR+
Sbjct: 104 YGMHDTTKSHCDECAICMEDFEDGQYCQVFPKCKHMYHSNCIDTWLQKNPTCPICRS 160

[Close]

BLAST of Tan0021693 vs. ExPASy TrEMBL
Match: A0A444Y4D6 (RING-type domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g092645 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.6e-11
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 15  YDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRT 72
           Y  +D + S   ECAICLE+F D   C+VFP CKHM+H++CI +WL  N TCPICR+
Sbjct: 105 YGMHDTTKSRCDECAICLEDFEDGQCCQVFPVCKHMYHSNCIDNWLQKNVTCPICRS 161

[Close]

BLAST of Tan0021693 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-12
Identity = 29/68 (42.65%), Postives = 38/68 (55.88%), Query Frame = 0


Query: 15  YDEND---------ESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQT 74
           YD+ND         E    + EC++CL EF D    R+ PNC H+FH  CI  WL  N  
Sbjct: 116 YDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNAN 175

[Close]

BLAST of Tan0021693 vs. TAIR 10
Match: AT3G05200.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 4.2e-12
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 27  ECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL 74
           ECAICL EF D  + R+ P C H+FH HCI +WL  + TCP+CR  L
Sbjct: 127 ECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANL 173

[Close]

BLAST of Tan0021693 vs. TAIR 10
Match: AT1G53010.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 7.1e-12
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 14  DYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL 73
           +++E++E + E+ ECAICL  +     CRVFP C+H++H  CI +WL  + TCP CR  L
Sbjct: 116 NHEEDEEKSLESRECAICLSGYVVNEECRVFPVCRHIYHALCIDAWLKNHLTCPTCRKDL 175

[Close]

BLAST of Tan0021693 vs. TAIR 10
Match: AT5G27420.1 (carbon/nitrogen insensitive 1 )

HSP 1 Score: 67.0 bits (162), Expect = 7.1e-12
Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 0


Query: 7   TKPSVDYDYDENDESTSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTC 66
           T P+  Y   +  +      ECAICL EF D  + R+ P C H+FH HCI +WL  + TC
Sbjct: 103 TFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTC 162

Query: 67  PICRTQL 74
           P+CRT L
Sbjct: 163 PVCRTNL 169

[Close]

BLAST of Tan0021693 vs. TAIR 10
Match: AT3G48030.1 (hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-11
Identity = 26/53 (49.06%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 21  STSETSECAICLEEFGDRVSCRVFPNCKHMFHTHCIISWLGINQTCPICRTQL 74
           S  +  +CA+CL EF D    R+ P C H FH HCI +WL  N TCP+CR  L
Sbjct: 200 SLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSL 252

The following BLAST results are available for this feature:

BLAST of Tan0021693 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LF65	9.1e-12	55.32	RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2	[more]
Q9LSW9	1.5e-11	42.65	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
Q8RXX9	5.9e-11	55.32	E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV...	[more]
Q9C919	1.0e-10	45.00	Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana OX=3702 GN=ATL19 P...	[more]
Q8LGA5	1.0e-10	44.78	E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 ...	[more]

BLAST of Tan0021693 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652743.1	9.6e-27	78.08	uncharacterized protein LOC105435076 [Cucumis sativus] >KGN56259.2 hypothetical ...	[more]
KAG6577374.1	8.1e-26	72.60	RING-H2 finger protein ATL8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023545744.1	2.6e-24	77.03	RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo]	[more]
KAG7031368.1	4.5e-24	76.71	RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6600728.1	4.5e-24	76.71	putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of Tan0021693 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7Y8	3.7e-24	77.94	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104940 P...	[more]
A0A2I0VD18	1.2e-11	49.23	RING-H2 finger protein ATL32 OS=Dendrobium catenatum OX=906689 GN=ATL32 PE=4 SV=...	[more]
A0A6P4BX25	2.1e-11	54.39	E3 ubiquitin-protein ligase RING1-like OS=Arachis duranensis OX=130453 GN=LOC107...	[more]
A0A444Y4F4	2.7e-11	54.39	RING-type domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g09265...	[more]
A0A444Y4D6	3.6e-11	56.14	RING-type domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g09264...	[more]

BLAST of Tan0021693 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43420.1	1.1e-12	42.65	RING/U-box superfamily protein	[more]
AT3G05200.1	4.2e-12	55.32	RING/U-box superfamily protein	[more]
AT1G53010.1	7.1e-12	45.00	RING/U-box superfamily protein	[more]
AT5G27420.1	7.1e-12	44.78	carbon/nitrogen insensitive 1	[more]
AT3G48030.1	1.2e-11	49.06	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family ...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 28..69 e-value: 1.7E-6 score: 37.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 27..70 e-value: 1.7E-13 score: 50.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 28..70 score: 12.740079
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 1..73 e-value: 1.3E-20 score: 74.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 6..71
None	No IPR available	PANTHER	PTHR45798:SF62	RING-H2 FINGER PROTEIN ATL3-LIKE	coord: 6..71
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 27..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0021693.1	Tan0021693.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0016020	membrane