Tan0021462 (gene) Snake gourd v1

Overview


Name	Tan0021462
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Methyltransferase-related protein
Location	LG03: 61583561 .. 61584530 (-)
RNA-Seq Expression	Tan0021462
Synteny	Tan0021462

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGTCAACAATCACAATGTCGAATATTCAAACAATCTCCATTTCCAATGCCATTCCCAGACCTAATCAATTACGCGTTCTTCCCCCAATTTCAATTTCACAATAAAAAACCCTAATTTCCCATTCTTCTTCCCCCAAAATCCCTCTCTCCGTTTCCATTTCCCCAATGTGTCCTCTCAGATTCATCCTCGTTTTCCTCTCTGCAATCCTCGCCGGATACGTCGCCTGGAGATCCGCCTCTTCTTCTTCCTCGTCGTCGGACCTCTTTCCGGCGACCGAAACGGACAAATCGCCGCCGGAAAATGAGAATCAAGGCCTGAAGGAAGACGGATTCGGATTGAAGAGGACGATTCAGAACGGATTCTGGATTTTCGTCGACATGGCGAGCGGGAGATTCCTGTGGAGGAATTTGAACGCGTCGATTCTCAACAAAAACCACCAGGTCGAGAAGGTTCAGAGTAAATACTAAGATATTCATTTTGTTCATTCTTTTTTACTCGTGAAGTTTAATTGTATTGCTGCTTCTGGAAATTGTGTTCATCGATCATCTGCTCTCTGTAGACTGTTCTTGAATCCTTGATTGATGGAAGTTGAAATGTTCATAGTGAAATTCATCCACATGAGAGAATTAAGAACTTTCTAATTGATCTCTATTAATTAGAAGATATCAATGTTTGGTGTTTGGGGGTTAAATAGGATATATGATTGGCTTCTTGAAGAAATATATGTAGCTATAATTATAAATTTCATTTGAGAAAATCAATCCAAATATTTATGACTAGTCTACAATTTTTTTTTTTAGAACTAGTCTACAAAAATGTTAACGTAAACATTCCATAGCTTTAAAAAATGCTATAAACTGTGTGGCATGAAGTTTATGTCGTTCGAACCCTAAAAAATTTATGATAATGTTTTTTAATCCCTAAATTAGAGGATAAAGTCAAACAACTCATTAAGAGCAAAGAATGA

mRNA sequence

CAAAGTCAACAATCACAATGTCGAATATTCAAACAATCTCCATTTCCAATGCCATTCCCAGACCTAATCAATTACGCGTTCTTCCCCCAATTTCAATTTCACAATAAAAAACCCTAATTTCCCATTCTTCTTCCCCCAAAATCCCTCTCTCCGTTTCCATTTCCCCAATGTGTCCTCTCAGATTCATCCTCGTTTTCCTCTCTGCAATCCTCGCCGGATACGTCGCCTGGAGATCCGCCTCTTCTTCTTCCTCGTCGTCGGACCTCTTTCCGGCGACCGAAACGGACAAATCGCCGCCGGAAAATGAGAATCAAGGCCTGAAGGAAGACGGATTCGGATTGAAGAGGACGATTCAGAACGGATTCTGGATTTTCGTCGACATGGCGAGCGGGAGATTCCTGTGGAGGAATTTGAACGCGTCGATTCTCAACAAAAACCACCAGGTCGAGAAGGTTCAGAGTAAATACTAAGATATTCATTTTGTTCATTCTTTTTTACTCGTGAAGTTTAATTGTATTGCTGCTTCTGGAAATTGTGTTCATCGATCATCTGCTCTCTGTAGACTGTTCTTGAATCCTTGATTGATGGAAGTTGAAATGTTCATAGTGAAATTCATCCACATGAGAGAATTAAGAACTTTCTAATTGATCTCTATTAATTAGAAGATATCAATGTTTGGTGTTTGGGGGTTAAATAGGATATATGATTGGCTTCTTGAAGAAATATATGTAGCTATAATTATAAATTTCATTTGAGAAAATCAATCCAAATATTTATGACTAGTCTACAATTTTTTTTTTTAGAACTAGTCTACAAAAATGTTAACGTAAACATTCCATAGCTTTAAAAAATGCTATAAACTGTGTGGCATGAAGTTTATGTCGTTCGAACCCTAAAAAATTTATGATAATGTTTTTTAATCCCTAAATTAGAGGATAAAGTCAAACAACTCATTAAGAGCAAAGAATGA

Coding sequence (CDS)

ATGTGTCCTCTCAGATTCATCCTCGTTTTCCTCTCTGCAATCCTCGCCGGATACGTCGCCTGGAGATCCGCCTCTTCTTCTTCCTCGTCGTCGGACCTCTTTCCGGCGACCGAAACGGACAAATCGCCGCCGGAAAATGAGAATCAAGGCCTGAAGGAAGACGGATTCGGATTGAAGAGGACGATTCAGAACGGATTCTGGATTTTCGTCGACATGGCGAGCGGGAGATTCCTGTGGAGGAATTTGAACGCGTCGATTCTCAACAAAAACCACCAGGTCGAGAAGGTTCAGAGTAAATACTAA

Protein sequence

MCPLRFILVFLSAILAGYVAWRSASSSSSSSDLFPATETDKSPPENENQGLKEDGFGLKRTIQNGFWIFVDMASGRFLWRNLNASILNKNHQVEKVQSKY

Homology

[Close]

BLAST of Tan0021462 vs. NCBI nr
Match: KAG6595503.1 (hypothetical protein SDJN03_12056, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027489.1 hypothetical protein SDJN02_11502, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.8 bits (382), Expect = 3.2e-33
Identity = 78/101 (77.23%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 1   MCPLRFILVFLSAILAGYVAWRSA---SSSSSSSDLFPATETDKSPPENENQGLKEDGFG 60
           MCPLRFILVFLSAILAGYVAWRSA   SSSSSSSDLFPA E++KSP E+EN+ ++EDGFG
Sbjct: 1   MCPLRFILVFLSAILAGYVAWRSASSSSSSSSSSDLFPAVESEKSPLESENRRVEEDGFG 60

Query: 61  LKRTIQNGFWIFVDMASGRFLWRNLNASILNKNHQVEKVQS 99
           LK+ IQ GFWIFVDMASGRFLWRNL++S L+K+H  EKV+S
Sbjct: 61  LKKMIQKGFWIFVDMASGRFLWRNLHSSALDKDHHGEKVES 101

[Close]

BLAST of Tan0021462 vs. NCBI nr
Match: XP_038882347.1 (uncharacterized protein LOC120073608 [Benincasa hispida])

HSP 1 Score: 151.0 bits (380), Expect = 5.5e-33
Identity = 81/102 (79.41%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 1   MCPLRFILVFLSAILAGYVAWRSA------SSSSSSSDLFPATE-TDKSPPENENQGLKE 60
           MCPLRFILVFLSAILAGY AWRSA      SSSSSSSD+F ATE +DKSP E EN+ + E
Sbjct: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSDIFQATEDSDKSPAETENRSVTE 60

Query: 61  DGFGLKRTIQNGFWIFVDMASGRFLWRNLNASILNKNHQVEK 96
           DGFGLKRTIQNGFW FVDMASGRFLWRNLNASILNKN QV++
Sbjct: 61  DGFGLKRTIQNGFWTFVDMASGRFLWRNLNASILNKNKQVKE 102

[Close]

BLAST of Tan0021462 vs. NCBI nr
Match: XP_008441985.1 (PREDICTED: uncharacterized protein LOC103485982 [Cucumis melo] >KAA0060106.1 uncharacterized protein E6C27_scaffold39G00250 [Cucumis melo var. makuwa] >TYK08421.1 uncharacterized protein E5676_scaffold654G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-30
Identity = 75/103 (72.82%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   MCPLRFILVFLSAILAGYVAWRSA---------SSSSSSSDLFPATET-DKSPPENENQG 60
           MCPLRFILVFLSAILAGY AWRSA         SSSSSSSD+F ATE  DKS P+NEN+ 
Sbjct: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60

Query: 61  LKEDGFGLKRTIQNGFWIFVDMASGRFLWRNLNASILNKNHQV 94
           ++EDGFG+KR ++NGFW FVDMASGRFLWRN+N SILNKN QV
Sbjct: 61  VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQV 103

[Close]

BLAST of Tan0021462 vs. NCBI nr
Match: KAE8649374.1 (hypothetical protein Csa_021566 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-25
Identity = 67/101 (66.34%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1   MCPLRFILVFLSAILAGYVAWRSASSSSSSSDLFPATE-TDKSPPENENQGLKEDGFGLK 60
           MCPLRFIL+FLSAILAGY AWRSASSSSSSSD+F ATE +DKS PENEN+   ED  G+ 
Sbjct: 1   MCPLRFILLFLSAILAGYFAWRSASSSSSSSDIFQATEASDKSAPENENRSGTEDRLGVN 60

Query: 61  RTIQNGFWIFVDMASGRFLWRNLNASILNKNHQVEKVQSKY 101
           R ++ GFW FVDMASGRFLWRNLN    N  H + +    Y
Sbjct: 61  RMVEKGFWTFVDMASGRFLWRNLN-GCFNSGHVMIEATKAY 100

[Close]

BLAST of Tan0021462 vs. NCBI nr
Match: XP_022156242.1 (uncharacterized protein LOC111023174 [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 4.1e-20
Identity = 64/99 (64.65%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 1  MCPLRFILVFLSAILAGYVAWRSASSSS-SSSDLFPATETDKSPPENENQGLKEDGFGLK 60
          MCPLRFILVFLSA+LAGYVAWRSASSSS SSSD+     ++KSPP +E +       G+ 
Sbjct: 1  MCPLRFILVFLSAVLAGYVAWRSASSSSISSSDV----ASEKSPPSDEKR-------GVG 60

Query: 61 RTIQNGFWIFVDMASGRFLWRNLNASILNKNHQVEKVQS 99
           TIQNGFWIFVDMASGR+LWRNLN S     +Q  KV+S
Sbjct: 61 TTIQNGFWIFVDMASGRYLWRNLNGS-----NQAAKVES 83

[Close]

BLAST of Tan0021462 vs. ExPASy TrEMBL
Match: A0A5A7V0V1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00360 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.6e-31
Identity = 75/103 (72.82%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   MCPLRFILVFLSAILAGYVAWRSA---------SSSSSSSDLFPATET-DKSPPENENQG 60
           MCPLRFILVFLSAILAGY AWRSA         SSSSSSSD+F ATE  DKS P+NEN+ 
Sbjct: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60

Query: 61  LKEDGFGLKRTIQNGFWIFVDMASGRFLWRNLNASILNKNHQV 94
           ++EDGFG+KR ++NGFW FVDMASGRFLWRN+N SILNKN QV
Sbjct: 61  VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQV 103

[Close]

BLAST of Tan0021462 vs. ExPASy TrEMBL
Match: A0A1S3B5E4 (uncharacterized protein LOC103485982 OS=Cucumis melo OX=3656 GN=LOC103485982 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.6e-31
Identity = 75/103 (72.82%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   MCPLRFILVFLSAILAGYVAWRSA---------SSSSSSSDLFPATET-DKSPPENENQG 60
           MCPLRFILVFLSAILAGY AWRSA         SSSSSSSD+F ATE  DKS P+NEN+ 
Sbjct: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60

Query: 61  LKEDGFGLKRTIQNGFWIFVDMASGRFLWRNLNASILNKNHQV 94
           ++EDGFG+KR ++NGFW FVDMASGRFLWRN+N SILNKN QV
Sbjct: 61  VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQV 103

[Close]

BLAST of Tan0021462 vs. ExPASy TrEMBL
Match: A0A0A0KWN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G192100 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.6e-30
Identity = 72/96 (75.00%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1  MCPLRFILVFLSAILAGYVAWRSASSSSSSSDLFPATE-TDKSPPENENQGLKEDGFGLK 60
          MCPLRFIL+FLSAILAGY AWRSASSSSSSSD+F ATE +DKS PENEN+   ED  G+ 
Sbjct: 1  MCPLRFILLFLSAILAGYFAWRSASSSSSSSDIFQATEASDKSAPENENRSGTEDRLGVN 60

Query: 61 RTIQNGFWIFVDMASGRFLWRNLNASILNKNHQVEK 96
          R ++ GFW FVDMASGRFLWRNLN SILNKN QV++
Sbjct: 61 RMVEKGFWTFVDMASGRFLWRNLNGSILNKNKQVKE 96

[Close]

BLAST of Tan0021462 vs. ExPASy TrEMBL
Match: A0A6J1DRJ4 (uncharacterized protein LOC111023174 OS=Momordica charantia OX=3673 GN=LOC111023174 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.0e-20
Identity = 64/99 (64.65%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 1  MCPLRFILVFLSAILAGYVAWRSASSSS-SSSDLFPATETDKSPPENENQGLKEDGFGLK 60
          MCPLRFILVFLSA+LAGYVAWRSASSSS SSSD+     ++KSPP +E +       G+ 
Sbjct: 1  MCPLRFILVFLSAVLAGYVAWRSASSSSISSSDV----ASEKSPPSDEKR-------GVG 60

Query: 61 RTIQNGFWIFVDMASGRFLWRNLNASILNKNHQVEKVQS 99
           TIQNGFWIFVDMASGR+LWRNLN S     +Q  KV+S
Sbjct: 61 TTIQNGFWIFVDMASGRYLWRNLNGS-----NQAAKVES 83

[Close]

BLAST of Tan0021462 vs. ExPASy TrEMBL
Match: A0A1U8B9L8 (uncharacterized protein LOC104611146 OS=Nelumbo nucifera OX=4432 GN=LOC104611146 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 55/84 (65.48%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1  MCPLRFILVFLSAILAGYVAWRSA-SSSSSSSDLFPATETDKSPPEN-ENQGLKEDGFGL 60
          MCPLR ILVFLSA LAGY AWR+  SSSSSSSD+      D S  E   +QG +E  F L
Sbjct: 1  MCPLRIILVFLSATLAGYFAWRTVRSSSSSSSDIDDMIHGDSSDTEKVSSQGDQE--FNL 60

Query: 61 KRTIQNGFWIFVDMASGRFLWRNL 83
          KR IQNGFW+ VDMASGR+LWRNL
Sbjct: 61 KRAIQNGFWVIVDMASGRYLWRNL 82

[Close]

BLAST of Tan0021462 vs. TAIR 10
Match: AT5G18150.1 (Methyltransferase-related protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-16
Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 1  MCPLRFILVFLSAILAGYVAWRSASSSSSSSDLFPATETDKSPPENENQGLKEDGFGLKR 60
          MCP+RF+LVF SA+LAGY AW++ SSS          E D     NE Q L      LK+
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSS---------PEFDSPDELNEKQEL-----NLKK 60

Query: 61 TIQNGFWIFVDMASGRFLWRNL 83
           ++NGFW+FVDMASGR+LWRNL
Sbjct: 61 KMENGFWVFVDMASGRYLWRNL 68

[Close]

BLAST of Tan0021462 vs. TAIR 10
Match: AT5G14602.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Methyltransferase-related protein (TAIR:AT5G18150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-15
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 1  MCPLRFILVFLSAILAGYVAWRSASSSSS--SSDLFPATETDKSPPENENQGLKEDGFGL 60
          MCPLRF+LVF SA+LAGY+AWR+ +S+    S +L  A   +K             G   
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELFSDELLQAEAKEK------------QGLDF 60

Query: 61 KRTIQNGFWIFVDMASGRFLWRNL 83
          KR + NG W FVDMASGR+LWRNL
Sbjct: 61 KRKMDNGLWTFVDMASGRYLWRNL 72

[Close]

BLAST of Tan0021462 vs. TAIR 10
Match: AT5G58375.1 (Methyltransferase-related protein )

HSP 1 Score: 58.5 bits (140), Expect = 3.5e-09
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 1  MCPLRFILVFLSAILAGYVAWRSASSSSSSSDLFPATETDKSPPENEN-QGLKEDGFGLK 60
          MCPLR IL+FLSA LAG+   +    +S+S D    + TD    ++++  G  + G  +K
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKL--NSTSDDPLDDSFTDAEHADDDSVSGFSKVGMAMK 60

Query: 61 RTIQNGFWIFVDMASGRFLWRNL 83
              +GFW  VDMASGR+LW NL
Sbjct: 61 ----SGFWTCVDMASGRYLWNNL 77

The following BLAST results are available for this feature:

BLAST of Tan0021462 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0021462 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595503.1	3.2e-33	77.23	hypothetical protein SDJN03_12056, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038882347.1	5.5e-33	79.41	uncharacterized protein LOC120073608 [Benincasa hispida]	[more]
XP_008441985.1	1.1e-30	72.82	PREDICTED: uncharacterized protein LOC103485982 [Cucumis melo] >KAA0060106.1 unc...	[more]
KAE8649374.1	1.5e-25	66.34	hypothetical protein Csa_021566 [Cucumis sativus]	[more]
XP_022156242.1	4.1e-20	64.65	uncharacterized protein LOC111023174 [Momordica charantia]	[more]

BLAST of Tan0021462 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V0V1	5.6e-31	72.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B5E4	5.6e-31	72.82	uncharacterized protein LOC103485982 OS=Cucumis melo OX=3656 GN=LOC103485982 PE=...	[more]
A0A0A0KWN3	3.6e-30	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G192100 PE=4 SV=1	[more]
A0A6J1DRJ4	2.0e-20	64.65	uncharacterized protein LOC111023174 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A1U8B9L8	2.3e-16	65.48	uncharacterized protein LOC104611146 OS=Nelumbo nucifera OX=4432 GN=LOC104611146...	[more]

BLAST of Tan0021462 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18150.1	1.7e-16	53.66	Methyltransferase-related protein	[more]
AT5G14602.1	1.5e-15	50.00	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT5G58375.1	3.5e-09	43.37	Methyltransferase-related protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..44
None	No IPR available	PANTHER	PTHR34132	EMB\|CAB87627.1-RELATED	coord: 1..88
None	No IPR available	PANTHER	PTHR34132:SF2	EMB\|CAB87627.1-RELATED	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0021462.1	Tan0021462.1	mRNA