Tan0021233 (gene) Snake gourd v1

Overview


Name	Tan0021233
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	MYND-type domain-containing protein
Location	LG05: 81709152 .. 81710836 (-)
RNA-Seq Expression	Tan0021233
Synteny	Tan0021233

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACATACTTGCTCTAACAACGATCCAAATCTGGCTTCATTTCATCCTCCATTAACGGACCTCCATTTTTGCAGTCCTTTCATGGCGGTTTCATTTTCAAGATGAAGGCCACAACCAGGACCAATCTATTACACTCCGGAATGGTGTGCAATAAAAGGAGGAGAACTTCGACCTACACCGGCGCCGGGATTTCTGATCTCTTCGACGGTTTGCCAGACGATTTAGTCGTCGTCGTCCTCGGCAAGCTTAGCACCTCCGCTTCTTCTCCTTCCGATCTCGTCAACGTCATGTTATCGTAAGAATCGCCTAATTTGTGGTTTGTTTAATTTCTCAGTCGGTTGTAATTTTCTTATGTGATATTTTGTTTGCGAATTATATGACAGATGTAAAAGGTTCAATCGATTGGCTCTGCATCCGATGGTGCTATCGAAAGCTGGACTTAAAGCATTTGAAATCAGAACCAAAAATTGGAGCGAATCGACTCATCGATTTCTCAAATCGTGCGTTTCTGCCGGTAACGTGGAAGCATGCTACACTCTAGGAATGGTTCGTGTAATTGATTAATTTTCCTCTCTGCATTTTCAAACTGTGCTGATTTTGAATATCAATTCGGTTATGTTTGATTACTGTTTTCTTTTTTGCAGATCGAATTTTATTGTTTGAAGAACAGAGGAACTGGAGCTTCGTTAATGGCGAAGGCCGCGATTAAATCTCATCCGTTGGCGCTTTACTCGCTCGCCATCGTACAATTTAACGGAAGCGGTGGTTCAAAGAGCGACAAGAATCTCCGTGCCGGTGTGGCTTTGTGTGGACGAGCCGCTTATCTCGGCCATATCGACGCGCTTCGTGAACTAGGCCACTGCCTTCAAGACGGTTACGGCGTCGCTCAAAATGCATCCGAGGGACGTCGTCTCTTAATCGAAGCAAACGCGCGTGAGCTCGCGTCCATAACAAACTCCTCCCTCCGCCGTCTCAATTACTCCGGCGACCGTCCGTCCACGACGGATTCCAGCGGATCACTTCTCAGTGATTTCGGCTGCAACATTCCGGCGCCGGAGGCTCATCCGGCGAACCAATTTTTAAGAGATTGGTTCGCGTCGGGCCGTGGATTTATCGCTGAAGGACTGAGACTCTGCTCGAATAGTGGCTGTGGAAGGCCAGAGACTCGGCTTCATGAATTCCGGCGGTGCTCGGTTTGTGGAAATGTAAATTATTGCTCGCGAGGTTGCCAAGCTCTGGACTGGAAATTGCGGCACAAGACGGAATGTGCGCCGTTCGATCGATGGCTGATCGAGGACGATGACCTCGAAGTCGACGAGGACGGCGGCGTAAACAGAATAGAGCAGTTCGGAGACGGTGAGAATGTGGAATCTGAATGATATTTGATGATTAAAGGCAAAGCTTACTTTTGTTGGTTGACATCAATTTATCTTTTTAAAATTCTTTTTATTTTATTTTATTTTATTTTCTTACCTTCTCGTCCTTTTTAACATGGAGTTAGCAATTGGCATCTCGAGGTTTTTGTCTGTACAACTACCGTTTTTTTTCCCTCTAATTTTCTACTCACTCGGCCGTTCTAGTACAAAATGTAAATTTAAAATGTATATATTTATTTAGAATTTCGTAGGTTAAAACTTAAAACATGTTTTTATTATCTTACTTTCCATCTCACTAGTTATTATTAC

mRNA sequence

CTACATACTTGCTCTAACAACGATCCAAATCTGGCTTCATTTCATCCTCCATTAACGGACCTCCATTTTTGCAGTCCTTTCATGGCGGTTTCATTTTCAAGATGAAGGCCACAACCAGGACCAATCTATTACACTCCGGAATGGTGTGCAATAAAAGGAGGAGAACTTCGACCTACACCGGCGCCGGGATTTCTGATCTCTTCGACGGTTTGCCAGACGATTTAGTCGTCGTCGTCCTCGGCAAGCTTAGCACCTCCGCTTCTTCTCCTTCCGATCTCGTCAACGTCATGTTATCATGTAAAAGGTTCAATCGATTGGCTCTGCATCCGATGGTGCTATCGAAAGCTGGACTTAAAGCATTTGAAATCAGAACCAAAAATTGGAGCGAATCGACTCATCGATTTCTCAAATCGTGCGTTTCTGCCGGTAACGTGGAAGCATGCTACACTCTAGGAATGATCGAATTTTATTGTTTGAAGAACAGAGGAACTGGAGCTTCGTTAATGGCGAAGGCCGCGATTAAATCTCATCCGTTGGCGCTTTACTCGCTCGCCATCGTACAATTTAACGGAAGCGGTGGTTCAAAGAGCGACAAGAATCTCCGTGCCGGTGTGGCTTTGTGTGGACGAGCCGCTTATCTCGGCCATATCGACGCGCTTCGTGAACTAGGCCACTGCCTTCAAGACGGTTACGGCGTCGCTCAAAATGCATCCGAGGGACGTCGTCTCTTAATCGAAGCAAACGCGCGTGAGCTCGCGTCCATAACAAACTCCTCCCTCCGCCGTCTCAATTACTCCGGCGACCGTCCGTCCACGACGGATTCCAGCGGATCACTTCTCAGTGATTTCGGCTGCAACATTCCGGCGCCGGAGGCTCATCCGGCGAACCAATTTTTAAGAGATTGGTTCGCGTCGGGCCGTGGATTTATCGCTGAAGGACTGAGACTCTGCTCGAATAGTGGCTGTGGAAGGCCAGAGACTCGGCTTCATGAATTCCGGCGGTGCTCGGTTTGTGGAAATGTAAATTATTGCTCGCGAGGTTGCCAAGCTCTGGACTGGAAATTGCGGCACAAGACGGAATGTGCGCCGTTCGATCGATGGCTGATCGAGGACGATGACCTCGAAGTCGACGAGGACGGCGGCGTAAACAGAATAGAGCAGTTCGGAGACGGTGAGAATGTGGAATCTGAATGATATTTGATGATTAAAGGCAAAGCTTACTTTTGTTGGTTGACATCAATTTATCTTTTTAAAATTCTTTTTATTTTATTTTATTTTATTTTCTTACCTTCTCGTCCTTTTTAACATGGAGTTAGCAATTGGCATCTCGAGGTTTTTGTCTGTACAACTACCGTTTTTTTTCCCTCTAATTTTCTACTCACTCGGCCGTTCTAGTACAAAATGTAAATTTAAAATGTATATATTTATTTAGAATTTCGTAGGTTAAAACTTAAAACATGTTTTTATTATCTTACTTTCCATCTCACTAGTTATTATTAC

Coding sequence (CDS)

ATGAAGGCCACAACCAGGACCAATCTATTACACTCCGGAATGGTGTGCAATAAAAGGAGGAGAACTTCGACCTACACCGGCGCCGGGATTTCTGATCTCTTCGACGGTTTGCCAGACGATTTAGTCGTCGTCGTCCTCGGCAAGCTTAGCACCTCCGCTTCTTCTCCTTCCGATCTCGTCAACGTCATGTTATCATGTAAAAGGTTCAATCGATTGGCTCTGCATCCGATGGTGCTATCGAAAGCTGGACTTAAAGCATTTGAAATCAGAACCAAAAATTGGAGCGAATCGACTCATCGATTTCTCAAATCGTGCGTTTCTGCCGGTAACGTGGAAGCATGCTACACTCTAGGAATGATCGAATTTTATTGTTTGAAGAACAGAGGAACTGGAGCTTCGTTAATGGCGAAGGCCGCGATTAAATCTCATCCGTTGGCGCTTTACTCGCTCGCCATCGTACAATTTAACGGAAGCGGTGGTTCAAAGAGCGACAAGAATCTCCGTGCCGGTGTGGCTTTGTGTGGACGAGCCGCTTATCTCGGCCATATCGACGCGCTTCGTGAACTAGGCCACTGCCTTCAAGACGGTTACGGCGTCGCTCAAAATGCATCCGAGGGACGTCGTCTCTTAATCGAAGCAAACGCGCGTGAGCTCGCGTCCATAACAAACTCCTCCCTCCGCCGTCTCAATTACTCCGGCGACCGTCCGTCCACGACGGATTCCAGCGGATCACTTCTCAGTGATTTCGGCTGCAACATTCCGGCGCCGGAGGCTCATCCGGCGAACCAATTTTTAAGAGATTGGTTCGCGTCGGGCCGTGGATTTATCGCTGAAGGACTGAGACTCTGCTCGAATAGTGGCTGTGGAAGGCCAGAGACTCGGCTTCATGAATTCCGGCGGTGCTCGGTTTGTGGAAATGTAAATTATTGCTCGCGAGGTTGCCAAGCTCTGGACTGGAAATTGCGGCACAAGACGGAATGTGCGCCGTTCGATCGATGGCTGATCGAGGACGATGACCTCGAAGTCGACGAGGACGGCGGCGTAAACAGAATAGAGCAGTTCGGAGACGGTGAGAATGTGGAATCTGAATGA

Protein sequence

MKATTRTNLLHSGMVCNKRRRTSTYTGAGISDLFDGLPDDLVVVVLGKLSTSASSPSDLVNVMLSCKRFNRLALHPMVLSKAGLKAFEIRTKNWSESTHRFLKSCVSAGNVEACYTLGMIEFYCLKNRGTGASLMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCLQDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNYSGDRPSTTDSSGSLLSDFGCNIPAPEAHPANQFLRDWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRGCQALDWKLRHKTECAPFDRWLIEDDDLEVDEDGGVNRIEQFGDGENVESE

Homology

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BLAST of Tan0021233 vs. ExPASy Swiss-Prot
Match: Q9FYF9 (F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 1.2e-120
Identity = 214/339 (63.13%), Postives = 260/339 (76.70%), Query Frame = 0


Query: 31  SDLFDGLPDDLVVVVLGKLSTSASSPSDLVNVMLSCKRFNRLALHPMVLSKAGLKAFEIR 90
           +DL D +PDDLV+ +L KL +++  P+D +NV+L+CKR   LA++P+VLS+   KA  ++
Sbjct: 41  ADLLDSIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVK 100

Query: 91  TKNWSESTHRFLKSCVSAGNVEACYTLGMIEFYCLKNRGTGASLMAKAAIKSHPLALYSL 150
             NWSE +HRFLK CV AG++EACYTLGMI FYCL+NRG GASLMAKAAI SH  ALYSL
Sbjct: 101 AHNWSEYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSL 160

Query: 151 AIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCLQDGYGVAQNASEGRRLL 210
           A++QFNGSGGSK+DK+LRAGVALC RAA+LGH+DALRELGHCLQDGYGV QN SEGRR L
Sbjct: 161 AVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNVSEGRRFL 220

Query: 211 IEANARELASITNSSLRR----LNYSGDRPSTTDSSGS----LLSDFGCNIPAPEAHPAN 270
           ++ANARELA++ +S ++     L+ S   P    + G     LLSDFGCN+PAPE HPAN
Sbjct: 221 VQANARELAAVLSSGIQARSTWLSLSQPPPPVVPNHGQQTCPLLSDFGCNVPAPETHPAN 280

Query: 271 QFLRDWFA-SGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRGCQALDWKL 330
           +FL DWFA  G     +GLRLCS++GCGRPETR HEFRRCSVCG VNYCSR CQALDWKL
Sbjct: 281 RFLADWFAVRGGDCPGDGLRLCSHAGCGRPETRKHEFRRCSVCGVVNYCSRACQALDWKL 340

Query: 331 RHKTECAPFDRWLIEDDDLEVDEDGGVNRIEQFGDGENV 361
           RHK +CAP  RWL E D  E     G  +I+  G+G+NV
Sbjct: 341 RHKMDCAPVQRWLEEGDGGE-----GNVQIDGNGNGDNV 374

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BLAST of Tan0021233 vs. ExPASy Swiss-Prot
Match: Q9FK27 (F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 3.7e-114
Identity = 202/336 (60.12%), Postives = 252/336 (75.00%), Query Frame = 0


Query: 17  NKRRRTSTYTGAGISDLFDGLPDDLVVVVLGKLSTSASSPSDLVNVMLSCKRFNRLALHP 76
           NK++R        +++ F+ L DDL++ +L KL+TSASSPSD + V+ +CKR NRL LHP
Sbjct: 5   NKKQRLENNHNNTVNNHFEDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHP 64

Query: 77  MVLSKAGLKAFEIRTKNWSESTHRFLKSCVSAGNVEACYTLGMIEFYCLKNRGTGASLMA 136
           +VLSKAG +   +  + WS+S+H+FLK CV+AGN++A Y+LGMI FYCL+N  +GASLMA
Sbjct: 65  LVLSKAGTQTLAVTAEKWSDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMA 124

Query: 137 KAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCLQDG 196
           KAAIKSH  ALYSL+++QFNGSGGSK+DKNLRAGVALC R+AYLGH+DALRELGHCLQDG
Sbjct: 125 KAAIKSHAPALYSLSVIQFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCLQDG 184

Query: 197 YGVAQNASEGRRLLIEANARELASITNSSLRRLNYSGDRPSTTDSSGSLLSDFGCNIPAP 256
           YGV ++ SEGRRLLI+ANARELA    S L     SGD   T       L+D    +P  
Sbjct: 185 YGVPRDVSEGRRLLIQANARELACSLRSYLSL--KSGDENET-------LTDLSV-VPVQ 244

Query: 257 EAHPANQFLRDWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRGCQA 316
           E HP N+FL++WF+SGR  +AEGLR+CS+ GCGRPETR HEFRRCSVCG VNYCSRGCQA
Sbjct: 245 EIHPVNRFLKEWFSSGRVDLAEGLRMCSHGGCGRPETRAHEFRRCSVCGKVNYCSRGCQA 304

Query: 317 LDWKLRHKTECAPFDRWLIEDDDLEVDEDGGVNRIE 353
           LDW+ +HK EC P D W+      E+ +DG    +E
Sbjct: 305 LDWRAKHKVECTPLDLWVAA--AAEIGDDGEAVAVE 328

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BLAST of Tan0021233 vs. ExPASy Swiss-Prot
Match: Q2YDC9 (Programmed cell death protein 2 OS=Bos taurus OX=9913 GN=PDCD2 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 3.7e-05
Identity = 23/56 (41.07%), Postives = 29/56 (51.79%), Query Frame = 0


Query: 276 IAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRGCQALDWKLRHKTECAPFD 332
           +  G  LC   GC  P       +RCS C   +YCS+  Q+LDW+L HK  CA  D
Sbjct: 128 LKSGAHLCRVCGCSGP-------KRCSRCHKAHYCSKEHQSLDWRLGHKQACAQTD 176

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BLAST of Tan0021233 vs. ExPASy Swiss-Prot
Match: Q09415 (SET domain-containing protein 14 OS=Caenorhabditis elegans OX=6239 GN=set-14 PE=4 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 3.1e-04
Identity = 20/42 (47.62%), Postives = 26/42 (61.90%), Query Frame = 0


Query: 286 SGCGRPETRLHEFRRCSVCGNVNYCSRGCQALDWKLRHKTEC 328
           S C +  T + E ++CS C  + YCS+ CQ  DWKL HK EC
Sbjct: 24  SYCNQCLTSMAELKKCSACRRLAYCSQECQRADWKL-HKVEC 64

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BLAST of Tan0021233 vs. ExPASy Swiss-Prot
Match: Q9SB51 (Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.1e-04
Identity = 24/58 (41.38%), Postives = 30/58 (51.72%), Query Frame = 0


Query: 300 RCSVCGNVNYCSRGCQALDWKLRHKTECAP----FDRWLIEDDDLEVDEDGGVNRIEQ 354
           RCS C  V YCS  CQ + W+  HK EC P    +D     D DL + E+ G N  E+
Sbjct: 84  RCSRCKAVRYCSGKCQIIHWRQGHKDECHPASIVYDSEDESDSDLRLGEENGQNTPEE 141

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BLAST of Tan0021233 vs. NCBI nr
Match: XP_008439699.1 (PREDICTED: F-box protein At1g67340 [Cucumis melo] >KAA0055331.1 F-box protein [Cucumis melo var. makuwa] >TYJ99256.1 F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 659.4 bits (1700), Expect = 1.7e-185
Identity = 325/350 (92.86%), Postives = 334/350 (95.43%), Query Frame = 0


Query: 14  MVCNKRRRTSTYTGAGISDLFDGLPDDLVVVVLGKLSTSASSPSDLVNVMLSCKRFNRLA 73
           M+CNKRRRTST  GAGISDLFDGLPDDLVVVVLGKLS +ASSPSDLVNVM++CKRFNRLA
Sbjct: 1   MLCNKRRRTSTSAGAGISDLFDGLPDDLVVVVLGKLSATASSPSDLVNVMITCKRFNRLA 60

Query: 74  LHPMVLSKAGLKAFEIRTKNWSESTHRFLKSCVSAGNVEACYTLGMIEFYCLKNRGTGAS 133
           LHP+VLSKAG KAFEI+TKNWSESTHRFLK CVSAGNVEACYTLGMIEFYCLKNRGTGAS
Sbjct: 61  LHPIVLSKAGPKAFEIQTKNWSESTHRFLKLCVSAGNVEACYTLGMIEFYCLKNRGTGAS 120

Query: 134 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL 193
           LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL
Sbjct: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL 180

Query: 194 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNYSGDRPSTTDSSGSLLSDFGCNI 253
           QDGYGV QNASEGRRLLIEANARELA ITNSSLRRL+ S  R S TDS GSLLSDFGCN 
Sbjct: 181 QDGYGVPQNASEGRRLLIEANARELAYITNSSLRRLHCSSHRQSATDSGGSLLSDFGCNF 240

Query: 254 PAPEAHPANQFLRDWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 313
           PAPEAHPANQFLRDWFASGRG IAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG
Sbjct: 241 PAPEAHPANQFLRDWFASGRGSIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300

Query: 314 CQALDWKLRHKTECAPFDRWLIEDDDLEVDEDGGVNRIEQFGDGENVESE 364
           CQALDWKLRHKTECAPFDRWLIED++LE DEDGGVNRIEQFGDGENVESE
Sbjct: 301 CQALDWKLRHKTECAPFDRWLIEDEELEGDEDGGVNRIEQFGDGENVESE 350

[Close]

BLAST of Tan0021233 vs. NCBI nr
Match: XP_038894785.1 (F-box protein At1g67340 [Benincasa hispida])

HSP 1 Score: 651.7 bits (1680), Expect = 3.6e-183
Identity = 320/350 (91.43%), Postives = 331/350 (94.57%), Query Frame = 0


Query: 14  MVCNKRRRTSTYTGAGISDLFDGLPDDLVVVVLGKLSTSASSPSDLVNVMLSCKRFNRLA 73
           M+CNKRRRTST   AGISDLFDGLPDDLVVVVLGKLS +ASSPSDLVNVM++CKRFNRLA
Sbjct: 1   MLCNKRRRTSTSAAAGISDLFDGLPDDLVVVVLGKLSATASSPSDLVNVMITCKRFNRLA 60

Query: 74  LHPMVLSKAGLKAFEIRTKNWSESTHRFLKSCVSAGNVEACYTLGMIEFYCLKNRGTGAS 133
           LHP+VLSKAG K FEI TKNWSESTHRFLK CVSAGNVEACYTLGMIEFYCLKNRG+GAS
Sbjct: 61  LHPIVLSKAGPKLFEILTKNWSESTHRFLKLCVSAGNVEACYTLGMIEFYCLKNRGSGAS 120

Query: 134 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL 193
           LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL
Sbjct: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL 180

Query: 194 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNYSGDRPSTTDSSGSLLSDFGCNI 253
           QDGYGV QNASEGRRLLIEANAREL SITNSSLRRL+ SGD PS  DS GSLLSDFGCN 
Sbjct: 181 QDGYGVPQNASEGRRLLIEANARELTSITNSSLRRLHCSGDLPSAMDSGGSLLSDFGCNF 240

Query: 254 PAPEAHPANQFLRDWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 313
           PA EAHPAN+FLRDWFASGRGF+AEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG
Sbjct: 241 PAAEAHPANRFLRDWFASGRGFVAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300

Query: 314 CQALDWKLRHKTECAPFDRWLIEDDDLEVDEDGGVNRIEQFGDGENVESE 364
           CQALDWKLRHKTECAPFDRWLIEDDDLE D++G VNRIEQFGDGENVESE
Sbjct: 301 CQALDWKLRHKTECAPFDRWLIEDDDLEGDDNGDVNRIEQFGDGENVESE 350

[Close]

BLAST of Tan0021233 vs. NCBI nr
Match: XP_022994416.1 (F-box protein At5g50450-like [Cucurbita maxima])

HSP 1 Score: 650.6 bits (1677), Expect = 8.0e-183
Identity = 321/350 (91.71%), Postives = 331/350 (94.57%), Query Frame = 0


Query: 14  MVCNKRRRTSTYTGAGISDLFDGLPDDLVVVVLGKLSTSASSPSDLVNVMLSCKRFNRLA 73
           MVCNKRRRTST T AGI DLFD LPDDL+V++LGKLS +ASSPSDLVNVML+CKRFNRLA
Sbjct: 1   MVCNKRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLA 60

Query: 74  LHPMVLSKAGLKAFEIRTKNWSESTHRFLKSCVSAGNVEACYTLGMIEFYCLKNRGTGAS 133
           LHPMVLSKAG KAFEIR KNW ESTHRFLK CVSAGNVEACYTLGM+EFYC+KNRG GAS
Sbjct: 61  LHPMVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNVEACYTLGMVEFYCMKNRGNGAS 120

Query: 134 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL 193
           LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAA LGHIDALRELGHCL
Sbjct: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCL 180

Query: 194 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNYSGDRPSTTDSSGSLLSDFGCNI 253
           QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLN S DRPSTTDSSGSLLSDFG NI
Sbjct: 181 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDRPSTTDSSGSLLSDFGYNI 240

Query: 254 PAPEAHPANQFLRDWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 313
           PAPE HPANQFLRDWF SGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG
Sbjct: 241 PAPEVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300

Query: 314 CQALDWKLRHKTECAPFDRWLIEDDDLEVDEDGGVNRIEQFGDGENVESE 364
           CQALDWKL+HKTECAPFDRWLIEDDDLE D+D GVNRIEQFGDG NVE+E
Sbjct: 301 CQALDWKLQHKTECAPFDRWLIEDDDLEDDDDDGVNRIEQFGDGVNVETE 350

[Close]

BLAST of Tan0021233 vs. NCBI nr
Match: XP_022955215.1 (F-box protein At5g50450 [Cucurbita moschata] >XP_023542705.1 F-box protein At5g50450 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 649.4 bits (1674), Expect = 1.8e-182
Identity = 320/350 (91.43%), Postives = 331/350 (94.57%), Query Frame = 0


Query: 14  MVCNKRRRTSTYTGAGISDLFDGLPDDLVVVVLGKLSTSASSPSDLVNVMLSCKRFNRLA 73
           MVCNKRRRTST T AGI DLFD LPDDL+V++LGKLS +ASSPSDLVNVML+CKRFNRLA
Sbjct: 1   MVCNKRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLA 60

Query: 74  LHPMVLSKAGLKAFEIRTKNWSESTHRFLKSCVSAGNVEACYTLGMIEFYCLKNRGTGAS 133
           LHPMVLSKAG KAFEIR KNW ESTHRFLK CVSAGNVEACYTLGM+EFYC+KNRG GAS
Sbjct: 61  LHPMVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNVEACYTLGMVEFYCMKNRGNGAS 120

Query: 134 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL 193
           LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAA LGHIDALRELGHCL
Sbjct: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCL 180

Query: 194 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNYSGDRPSTTDSSGSLLSDFGCNI 253
           QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLN S DRP+TTDSSGSLLSDFG NI
Sbjct: 181 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDRPTTTDSSGSLLSDFGYNI 240

Query: 254 PAPEAHPANQFLRDWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 313
           PAPE HPANQFLRDWF SGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG
Sbjct: 241 PAPEVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300

Query: 314 CQALDWKLRHKTECAPFDRWLIEDDDLEVDEDGGVNRIEQFGDGENVESE 364
           CQALDWKL+HKTECAPFDRWLIEDDDLE D+D GVNRIEQFGDG NVE+E
Sbjct: 301 CQALDWKLQHKTECAPFDRWLIEDDDLEDDDDDGVNRIEQFGDGVNVETE 350

[Close]

BLAST of Tan0021233 vs. NCBI nr
Match: KAG6573130.1 (F-box protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012315.1 F-box protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 648.3 bits (1671), Expect = 4.0e-182
Identity = 319/350 (91.14%), Postives = 331/350 (94.57%), Query Frame = 0


Query: 14  MVCNKRRRTSTYTGAGISDLFDGLPDDLVVVVLGKLSTSASSPSDLVNVMLSCKRFNRLA 73
           MVCNKRRRTST T AGI DLFD LPDDL+V++LGKLS +ASSPSDLVNVML+CKRFNRLA
Sbjct: 1   MVCNKRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLA 60

Query: 74  LHPMVLSKAGLKAFEIRTKNWSESTHRFLKSCVSAGNVEACYTLGMIEFYCLKNRGTGAS 133
           LHPMVLSKAG KAFEIR KNW ESTHRFLK CVSAGN+EACYTLGM+EFYC+KNRG GAS
Sbjct: 61  LHPMVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNLEACYTLGMVEFYCMKNRGNGAS 120

Query: 134 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL 193
           LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAA LGHIDALRELGHCL
Sbjct: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCL 180

Query: 194 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNYSGDRPSTTDSSGSLLSDFGCNI 253
           QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLN S DRP+TTDSSGSLLSDFG NI
Sbjct: 181 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDRPTTTDSSGSLLSDFGYNI 240

Query: 254 PAPEAHPANQFLRDWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 313
           PAPE HPANQFLRDWF SGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG
Sbjct: 241 PAPEVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300

Query: 314 CQALDWKLRHKTECAPFDRWLIEDDDLEVDEDGGVNRIEQFGDGENVESE 364
           CQALDWKL+HKTECAPFDRWLIEDDDLE D+D GVNRIEQFGDG NVE+E
Sbjct: 301 CQALDWKLQHKTECAPFDRWLIEDDDLEDDDDDGVNRIEQFGDGVNVETE 350

[Close]

BLAST of Tan0021233 vs. ExPASy TrEMBL
Match: A0A5A7UP50 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004680 PE=4 SV=1)

HSP 1 Score: 659.4 bits (1700), Expect = 8.4e-186
Identity = 325/350 (92.86%), Postives = 334/350 (95.43%), Query Frame = 0


Query: 14  MVCNKRRRTSTYTGAGISDLFDGLPDDLVVVVLGKLSTSASSPSDLVNVMLSCKRFNRLA 73
           M+CNKRRRTST  GAGISDLFDGLPDDLVVVVLGKLS +ASSPSDLVNVM++CKRFNRLA
Sbjct: 1   MLCNKRRRTSTSAGAGISDLFDGLPDDLVVVVLGKLSATASSPSDLVNVMITCKRFNRLA 60

Query: 74  LHPMVLSKAGLKAFEIRTKNWSESTHRFLKSCVSAGNVEACYTLGMIEFYCLKNRGTGAS 133
           LHP+VLSKAG KAFEI+TKNWSESTHRFLK CVSAGNVEACYTLGMIEFYCLKNRGTGAS
Sbjct: 61  LHPIVLSKAGPKAFEIQTKNWSESTHRFLKLCVSAGNVEACYTLGMIEFYCLKNRGTGAS 120

Query: 134 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL 193
           LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL
Sbjct: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL 180

Query: 194 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNYSGDRPSTTDSSGSLLSDFGCNI 253
           QDGYGV QNASEGRRLLIEANARELA ITNSSLRRL+ S  R S TDS GSLLSDFGCN 
Sbjct: 181 QDGYGVPQNASEGRRLLIEANARELAYITNSSLRRLHCSSHRQSATDSGGSLLSDFGCNF 240

Query: 254 PAPEAHPANQFLRDWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 313
           PAPEAHPANQFLRDWFASGRG IAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG
Sbjct: 241 PAPEAHPANQFLRDWFASGRGSIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300

Query: 314 CQALDWKLRHKTECAPFDRWLIEDDDLEVDEDGGVNRIEQFGDGENVESE 364
           CQALDWKLRHKTECAPFDRWLIED++LE DEDGGVNRIEQFGDGENVESE
Sbjct: 301 CQALDWKLRHKTECAPFDRWLIEDEELEGDEDGGVNRIEQFGDGENVESE 350

[Close]

BLAST of Tan0021233 vs. ExPASy TrEMBL
Match: A0A1S3AZD5 (F-box protein At1g67340 OS=Cucumis melo OX=3656 GN=LOC103484413 PE=4 SV=1)

HSP 1 Score: 659.4 bits (1700), Expect = 8.4e-186
Identity = 325/350 (92.86%), Postives = 334/350 (95.43%), Query Frame = 0


Query: 14  MVCNKRRRTSTYTGAGISDLFDGLPDDLVVVVLGKLSTSASSPSDLVNVMLSCKRFNRLA 73
           M+CNKRRRTST  GAGISDLFDGLPDDLVVVVLGKLS +ASSPSDLVNVM++CKRFNRLA
Sbjct: 1   MLCNKRRRTSTSAGAGISDLFDGLPDDLVVVVLGKLSATASSPSDLVNVMITCKRFNRLA 60

Query: 74  LHPMVLSKAGLKAFEIRTKNWSESTHRFLKSCVSAGNVEACYTLGMIEFYCLKNRGTGAS 133
           LHP+VLSKAG KAFEI+TKNWSESTHRFLK CVSAGNVEACYTLGMIEFYCLKNRGTGAS
Sbjct: 61  LHPIVLSKAGPKAFEIQTKNWSESTHRFLKLCVSAGNVEACYTLGMIEFYCLKNRGTGAS 120

Query: 134 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL 193
           LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL
Sbjct: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL 180

Query: 194 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNYSGDRPSTTDSSGSLLSDFGCNI 253
           QDGYGV QNASEGRRLLIEANARELA ITNSSLRRL+ S  R S TDS GSLLSDFGCN 
Sbjct: 181 QDGYGVPQNASEGRRLLIEANARELAYITNSSLRRLHCSSHRQSATDSGGSLLSDFGCNF 240

Query: 254 PAPEAHPANQFLRDWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 313
           PAPEAHPANQFLRDWFASGRG IAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG
Sbjct: 241 PAPEAHPANQFLRDWFASGRGSIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300

Query: 314 CQALDWKLRHKTECAPFDRWLIEDDDLEVDEDGGVNRIEQFGDGENVESE 364
           CQALDWKLRHKTECAPFDRWLIED++LE DEDGGVNRIEQFGDGENVESE
Sbjct: 301 CQALDWKLRHKTECAPFDRWLIEDEELEGDEDGGVNRIEQFGDGENVESE 350

[Close]

BLAST of Tan0021233 vs. ExPASy TrEMBL
Match: A0A6J1JZ31 (F-box protein At5g50450-like OS=Cucurbita maxima OX=3661 GN=LOC111490141 PE=4 SV=1)

HSP 1 Score: 650.6 bits (1677), Expect = 3.9e-183
Identity = 321/350 (91.71%), Postives = 331/350 (94.57%), Query Frame = 0


Query: 14  MVCNKRRRTSTYTGAGISDLFDGLPDDLVVVVLGKLSTSASSPSDLVNVMLSCKRFNRLA 73
           MVCNKRRRTST T AGI DLFD LPDDL+V++LGKLS +ASSPSDLVNVML+CKRFNRLA
Sbjct: 1   MVCNKRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLA 60

Query: 74  LHPMVLSKAGLKAFEIRTKNWSESTHRFLKSCVSAGNVEACYTLGMIEFYCLKNRGTGAS 133
           LHPMVLSKAG KAFEIR KNW ESTHRFLK CVSAGNVEACYTLGM+EFYC+KNRG GAS
Sbjct: 61  LHPMVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNVEACYTLGMVEFYCMKNRGNGAS 120

Query: 134 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL 193
           LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAA LGHIDALRELGHCL
Sbjct: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCL 180

Query: 194 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNYSGDRPSTTDSSGSLLSDFGCNI 253
           QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLN S DRPSTTDSSGSLLSDFG NI
Sbjct: 181 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDRPSTTDSSGSLLSDFGYNI 240

Query: 254 PAPEAHPANQFLRDWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 313
           PAPE HPANQFLRDWF SGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG
Sbjct: 241 PAPEVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300

Query: 314 CQALDWKLRHKTECAPFDRWLIEDDDLEVDEDGGVNRIEQFGDGENVESE 364
           CQALDWKL+HKTECAPFDRWLIEDDDLE D+D GVNRIEQFGDG NVE+E
Sbjct: 301 CQALDWKLQHKTECAPFDRWLIEDDDLEDDDDDGVNRIEQFGDGVNVETE 350

[Close]

BLAST of Tan0021233 vs. ExPASy TrEMBL
Match: A0A6J1GUJ3 (F-box protein At5g50450 OS=Cucurbita moschata OX=3662 GN=LOC111457247 PE=4 SV=1)

HSP 1 Score: 649.4 bits (1674), Expect = 8.7e-183
Identity = 320/350 (91.43%), Postives = 331/350 (94.57%), Query Frame = 0


Query: 14  MVCNKRRRTSTYTGAGISDLFDGLPDDLVVVVLGKLSTSASSPSDLVNVMLSCKRFNRLA 73
           MVCNKRRRTST T AGI DLFD LPDDL+V++LGKLS +ASSPSDLVNVML+CKRFNRLA
Sbjct: 1   MVCNKRRRTSTTTAAGIHDLFDDLPDDLLVLLLGKLSANASSPSDLVNVMLTCKRFNRLA 60

Query: 74  LHPMVLSKAGLKAFEIRTKNWSESTHRFLKSCVSAGNVEACYTLGMIEFYCLKNRGTGAS 133
           LHPMVLSKAG KAFEIR KNW ESTHRFLK CVSAGNVEACYTLGM+EFYC+KNRG GAS
Sbjct: 61  LHPMVLSKAGPKAFEIRIKNWCESTHRFLKLCVSAGNVEACYTLGMVEFYCMKNRGNGAS 120

Query: 134 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL 193
           LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAA LGHIDALRELGHCL
Sbjct: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAACLGHIDALRELGHCL 180

Query: 194 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNYSGDRPSTTDSSGSLLSDFGCNI 253
           QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLN S DRP+TTDSSGSLLSDFG NI
Sbjct: 181 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNCSVDRPTTTDSSGSLLSDFGYNI 240

Query: 254 PAPEAHPANQFLRDWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 313
           PAPE HPANQFLRDWF SGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG
Sbjct: 241 PAPEVHPANQFLRDWFTSGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300

Query: 314 CQALDWKLRHKTECAPFDRWLIEDDDLEVDEDGGVNRIEQFGDGENVESE 364
           CQALDWKL+HKTECAPFDRWLIEDDDLE D+D GVNRIEQFGDG NVE+E
Sbjct: 301 CQALDWKLQHKTECAPFDRWLIEDDDLEDDDDDGVNRIEQFGDGVNVETE 350

[Close]

BLAST of Tan0021233 vs. ExPASy TrEMBL
Match: A0A6J1KQ99 (F-box protein At1g67340-like OS=Cucurbita maxima OX=3661 GN=LOC111495512 PE=4 SV=1)

HSP 1 Score: 646.0 bits (1665), Expect = 9.6e-182
Identity = 318/350 (90.86%), Postives = 328/350 (93.71%), Query Frame = 0


Query: 14  MVCNKRRRTSTYTGAGISDLFDGLPDDLVVVVLGKLSTSASSPSDLVNVMLSCKRFNRLA 73
           MVCNKRRRTST TGAGISDLFD LPDDLVVVVLGKLS +ASSPSD+VNVM++CKR NRLA
Sbjct: 1   MVCNKRRRTSTSTGAGISDLFDSLPDDLVVVVLGKLSAAASSPSDIVNVMITCKRLNRLA 60

Query: 74  LHPMVLSKAGLKAFEIRTKNWSESTHRFLKSCVSAGNVEACYTLGMIEFYCLKNRGTGAS 133
           LHP VL KAG K FEI+T NWSES+HRFLK CVSAGNVEACYTLGMIEFYCLKNRG+GAS
Sbjct: 61  LHPFVLKKAGPKVFEIQTINWSESSHRFLKLCVSAGNVEACYTLGMIEFYCLKNRGSGAS 120

Query: 134 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL 193
           LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL
Sbjct: 121 LMAKAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCL 180

Query: 194 QDGYGVAQNASEGRRLLIEANARELASITNSSLRRLNYSGDRPSTTDSSGSLLSDFGCNI 253
           QDGYGVAQNASEGRRLLIEANARELASITNSSL RL+  GDRP  TDSS SLLSDFGC  
Sbjct: 181 QDGYGVAQNASEGRRLLIEANARELASITNSSLLRLHCCGDRPPATDSSESLLSDFGCKF 240

Query: 254 PAPEAHPANQFLRDWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 313
           PAPE HPANQFLRDWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG
Sbjct: 241 PAPETHPANQFLRDWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRG 300

Query: 314 CQALDWKLRHKTECAPFDRWLIEDDDLEVDEDGGVNRIEQFGDGENVESE 364
           CQALDWKLRHKTECAPFDRWLIEDDDLE D+DG VNRIEQ GDGE+VESE
Sbjct: 301 CQALDWKLRHKTECAPFDRWLIEDDDLEGDDDGDVNRIEQLGDGEDVESE 350

[Close]

BLAST of Tan0021233 vs. TAIR 10
Match: AT1G67340.1 (HCP-like superfamily protein with MYND-type zinc finger )

HSP 1 Score: 434.5 bits (1116), Expect = 8.4e-122
Identity = 214/339 (63.13%), Postives = 260/339 (76.70%), Query Frame = 0


Query: 31  SDLFDGLPDDLVVVVLGKLSTSASSPSDLVNVMLSCKRFNRLALHPMVLSKAGLKAFEIR 90
           +DL D +PDDLV+ +L KL +++  P+D +NV+L+CKR   LA++P+VLS+   KA  ++
Sbjct: 41  ADLLDSIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVK 100

Query: 91  TKNWSESTHRFLKSCVSAGNVEACYTLGMIEFYCLKNRGTGASLMAKAAIKSHPLALYSL 150
             NWSE +HRFLK CV AG++EACYTLGMI FYCL+NRG GASLMAKAAI SH  ALYSL
Sbjct: 101 AHNWSEYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSL 160

Query: 151 AIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCLQDGYGVAQNASEGRRLL 210
           A++QFNGSGGSK+DK+LRAGVALC RAA+LGH+DALRELGHCLQDGYGV QN SEGRR L
Sbjct: 161 AVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNVSEGRRFL 220

Query: 211 IEANARELASITNSSLRR----LNYSGDRPSTTDSSGS----LLSDFGCNIPAPEAHPAN 270
           ++ANARELA++ +S ++     L+ S   P    + G     LLSDFGCN+PAPE HPAN
Sbjct: 221 VQANARELAAVLSSGIQARSTWLSLSQPPPPVVPNHGQQTCPLLSDFGCNVPAPETHPAN 280

Query: 271 QFLRDWFA-SGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRGCQALDWKL 330
           +FL DWFA  G     +GLRLCS++GCGRPETR HEFRRCSVCG VNYCSR CQALDWKL
Sbjct: 281 RFLADWFAVRGGDCPGDGLRLCSHAGCGRPETRKHEFRRCSVCGVVNYCSRACQALDWKL 340

Query: 331 RHKTECAPFDRWLIEDDDLEVDEDGGVNRIEQFGDGENV 361
           RHK +CAP  RWL E D  E     G  +I+  G+G+NV
Sbjct: 341 RHKMDCAPVQRWLEEGDGGE-----GNVQIDGNGNGDNV 374

[Close]

BLAST of Tan0021233 vs. TAIR 10
Match: AT5G50450.1 (HCP-like superfamily protein with MYND-type zinc finger )

HSP 1 Score: 412.9 bits (1060), Expect = 2.6e-115
Identity = 202/336 (60.12%), Postives = 252/336 (75.00%), Query Frame = 0


Query: 17  NKRRRTSTYTGAGISDLFDGLPDDLVVVVLGKLSTSASSPSDLVNVMLSCKRFNRLALHP 76
           NK++R        +++ F+ L DDL++ +L KL+TSASSPSD + V+ +CKR NRL LHP
Sbjct: 5   NKKQRLENNHNNTVNNHFEDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHP 64

Query: 77  MVLSKAGLKAFEIRTKNWSESTHRFLKSCVSAGNVEACYTLGMIEFYCLKNRGTGASLMA 136
           +VLSKAG +   +  + WS+S+H+FLK CV+AGN++A Y+LGMI FYCL+N  +GASLMA
Sbjct: 65  LVLSKAGTQTLAVTAEKWSDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMA 124

Query: 137 KAAIKSHPLALYSLAIVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCLQDG 196
           KAAIKSH  ALYSL+++QFNGSGGSK+DKNLRAGVALC R+AYLGH+DALRELGHCLQDG
Sbjct: 125 KAAIKSHAPALYSLSVIQFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCLQDG 184

Query: 197 YGVAQNASEGRRLLIEANARELASITNSSLRRLNYSGDRPSTTDSSGSLLSDFGCNIPAP 256
           YGV ++ SEGRRLLI+ANARELA    S L     SGD   T       L+D    +P  
Sbjct: 185 YGVPRDVSEGRRLLIQANARELACSLRSYLSL--KSGDENET-------LTDLSV-VPVQ 244

Query: 257 EAHPANQFLRDWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRGCQA 316
           E HP N+FL++WF+SGR  +AEGLR+CS+ GCGRPETR HEFRRCSVCG VNYCSRGCQA
Sbjct: 245 EIHPVNRFLKEWFSSGRVDLAEGLRMCSHGGCGRPETRAHEFRRCSVCGKVNYCSRGCQA 304

Query: 317 LDWKLRHKTECAPFDRWLIEDDDLEVDEDGGVNRIE 353
           LDW+ +HK EC P D W+      E+ +DG    +E
Sbjct: 305 LDWRAKHKVECTPLDLWVAA--AAEIGDDGEAVAVE 328

[Close]

BLAST of Tan0021233 vs. TAIR 10
Match: AT4G24560.1 (ubiquitin-specific protease 16 )

HSP 1 Score: 47.8 bits (112), Expect = 2.2e-05
Identity = 24/58 (41.38%), Postives = 30/58 (51.72%), Query Frame = 0


Query: 300 RCSVCGNVNYCSRGCQALDWKLRHKTECAP----FDRWLIEDDDLEVDEDGGVNRIEQ 354
           RCS C  V YCS  CQ + W+  HK EC P    +D     D DL + E+ G N  E+
Sbjct: 84  RCSRCKAVRYCSGKCQIIHWRQGHKDECHPASIVYDSEDESDSDLRLGEENGQNTPEE 141

[Close]

BLAST of Tan0021233 vs. TAIR 10
Match: AT2G24640.1 (ubiquitin-specific protease 19 )

HSP 1 Score: 47.4 bits (111), Expect = 2.9e-05
Identity = 26/74 (35.14%), Postives = 36/74 (48.65%), Query Frame = 0


Query: 273 RGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRGCQALDWKLRHKTECAPF-- 332
           R F+      C  S CG+  T     ++CS C +V YCS  CQ  DWK  HK +C  F  
Sbjct: 54  RDFMVSDTAEC--SVCGKATT-----KKCSRCKSVRYCSAACQTSDWKSGHKLKCKGFRS 113

Query: 333 -DRWLIEDDDLEVD 344
            D   +  DD++ +
Sbjct: 114 TDSSPVRRDDIDFE 120

[Close]

BLAST of Tan0021233 vs. TAIR 10
Match: AT1G17110.1 (ubiquitin-specific protease 15 )

HSP 1 Score: 45.1 bits (105), Expect = 1.4e-04
Identity = 17/46 (36.96%), Postives = 26/46 (56.52%), Query Frame = 0


Query: 300 RCSVCGNVNYCSRGCQALDWKLRHKTECAPFDRWLIEDDDLEVDED 346
           RCS C +V YCS  CQ + W++ HK EC P +      + +  ++D
Sbjct: 140 RCSRCKSVRYCSGKCQIIHWRVAHKDECVPVESCSSSSERVSFEKD 185

The following BLAST results are available for this feature:

BLAST of Tan0021233 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FYF9	1.2e-120	63.13	F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1	[more]
Q9FK27	3.7e-114	60.12	F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1	[more]
Q2YDC9	3.7e-05	41.07	Programmed cell death protein 2 OS=Bos taurus OX=9913 GN=PDCD2 PE=2 SV=1	[more]
Q09415	3.1e-04	47.62	SET domain-containing protein 14 OS=Caenorhabditis elegans OX=6239 GN=set-14 PE=...	[more]
Q9SB51	3.1e-04	41.38	Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP1...	[more]

BLAST of Tan0021233 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439699.1	1.7e-185	92.86	PREDICTED: F-box protein At1g67340 [Cucumis melo] >KAA0055331.1 F-box protein [C...	[more]
XP_038894785.1	3.6e-183	91.43	F-box protein At1g67340 [Benincasa hispida]	[more]
XP_022994416.1	8.0e-183	91.71	F-box protein At5g50450-like [Cucurbita maxima]	[more]
XP_022955215.1	1.8e-182	91.43	F-box protein At5g50450 [Cucurbita moschata] >XP_023542705.1 F-box protein At5g5...	[more]
KAG6573130.1	4.0e-182	91.14	F-box protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012315.1 F-b...	[more]

BLAST of Tan0021233 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UP50	8.4e-186	92.86	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004680...	[more]
A0A1S3AZD5	8.4e-186	92.86	F-box protein At1g67340 OS=Cucumis melo OX=3656 GN=LOC103484413 PE=4 SV=1	[more]
A0A6J1JZ31	3.9e-183	91.71	F-box protein At5g50450-like OS=Cucurbita maxima OX=3661 GN=LOC111490141 PE=4 SV...	[more]
A0A6J1GUJ3	8.7e-183	91.43	F-box protein At5g50450 OS=Cucurbita moschata OX=3662 GN=LOC111457247 PE=4 SV=1	[more]
A0A6J1KQ99	9.6e-182	90.86	F-box protein At1g67340-like OS=Cucurbita maxima OX=3661 GN=LOC111495512 PE=4 SV...	[more]

BLAST of Tan0021233 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67340.1	8.4e-122	63.13	HCP-like superfamily protein with MYND-type zinc finger	[more]
AT5G50450.1	2.6e-115	60.12	HCP-like superfamily protein with MYND-type zinc finger	[more]
AT4G24560.1	2.2e-05	41.38	ubiquitin-specific protease 16	[more]
AT2G24640.1	2.9e-05	35.14	ubiquitin-specific protease 19	[more]
AT1G17110.1	1.4e-04	36.96	ubiquitin-specific protease 15	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 7..159 e-value: 5.5E-16 score: 60.9
None	No IPR available	GENE3D	6.10.140.2220		coord: 200..254 e-value: 2.9E-11 score: 44.9
None	No IPR available	PANTHER	PTHR46758:SF9	HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN	coord: 1..282
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 23..137
None	No IPR available	SUPERFAMILY	144232	HIT/MYND zinc finger-like	coord: 207..256
IPR002893	Zinc finger, MYND-type	PFAM	PF01753	zf-MYND	coord: 211..251 e-value: 2.2E-8 score: 34.1
IPR002893	Zinc finger, MYND-type	PROSITE	PS50865	ZF_MYND_2	coord: 209..251 score: 11.205131
IPR044508	F-box protein At5g50450/At1g67340-like	PANTHER	PTHR46758	MYND DOMAIN-CONTAINING	coord: 1..282

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0021233.1	Tan0021233.1	mRNA
Tan0021233.2	Tan0021233.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding