Tan0021202 (gene) Snake gourd v1

Overview


Name	Tan0021202
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	LG08: 23356520 .. 23358968 (+)
RNA-Seq Expression	Tan0021202
Synteny	Tan0021202

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTATGTGTTTCTGCCTCTCTATATATTTGAGACTACCCTCTATATCAAAATAATTCATTGAGAATTCAATGACTTGAATACGTTTGGCATTTTGTTCAGTTTGATTTTCAGTATTTTTGTTACATTTATAATGGTATCAGAGCTACAGTCTTGCGACTACTTTTTTTTTCTTCTCCTTTTCGATGGAGTCTTCTAAAGCAAACTCTGAATTGTCAAGCTTCAAACTACATCAATAATCAACCTGGGAATAAGGTCTTGATGGTCAAATTGAGTAATGAAAATTTTCTTCTCTGGAAGTTTCAAATCGAATTTGCACTTGAAGGTCATGGGCTCTTGGAAAAGCATTTTGGTGAAAATTTAGGCCCTCCTCCCAAAACCCTACAAGTAAGTCAAAATTCAACTACTACTCATAATTTATAAACCAAATCCTGCATATGAACAGAGGAAAAGGCAAGATAAGTTGATTGCATCTTGGCTGCTAAGGTTTATGACTGAGAAAATTCTTGAACAAATGCTTCATTGTACTTTTGCTAAAGAAATTTGGATTTGCTTGCTTCAAATTTTTAACTCTAGAAATTTAGCTCAAGTTATGAAAATTAAGTTGACTCTGCAAAACATAATTGAATGAATATTTTTCGAAAATTAAGAAATGCATTGATGCTTTAATAGCAATAGGTAAACAATTTCAATCGAAGATCATATAGCTTATCTTTTACCTGTTCTTGGGCCTGAATATGAGTCTGAGTTCTGTTATATCTGCTAAAGTGTGTTCAGAGAATGTTCAAGATGTTATGGCACTCCTCCTCACTCATGAGAATCAGATTCAGAGTAAGGCTATAACACGGATGGAACACTACCCTCTGCTCATCTTTCCACTCATAATGTTATCTCTAAAGAAGAAGAAAACCAAAGAAGTGTTAACCATATGATGAGTTACCAAAATTTTAATAATAACAAGGGTCGAGGGCGAATGAATAATGGTCAAAATAGAGGAGGGCGGTATTCATGGAGCAACTGCAATAAGCCACAATGCCAAATTTAATTTGTAATAAAATTGGTCATACAGCTACTAGATGTTATTTTCGTTATGCTCCTTCTCGTCTGAATGTTGTGCCTCCAGGTAACCGTTCTTCTTCCCCTGAAGATTTTGGACAACCTAATTATGGCGTTCAATCTCCTCATATGGTTTTGATTACTACACCAAACTACAATCAAGATTGCAATTGGTACCCTGGTTTTGGAGCAAAATATCACCTTACAAACAATTTTGGCAATCTTTCAGTGAGTTCTGACTATCTTGGCAATAATCAAGTTCATGTTGGTAATGATGTCGATTTGTCTATCTCTCACTTTGGTTATGGCAGTATTACTTCCCCTCCCAACCAAACGTTTCACCTAAATAATCTTTTGCATGTTCCTTCAATAACCAAAAATTTGATTAGTGTTAGTCAATTTGCTAATGATAATTCTGTTTTTTTTTTAATTTCATCCTAAATTTTGTTTTGTGAAGAATCTAACAACTTGTTATTCTAAGGATACTCTCCATGATGGCCTATACCGTTTCAATCTATCGCCTCAACATCATTTATTCAACAAGCATCCTCAAGCTAATGTTTCCTCAACAATATTGTCTTTTCCCTTAGGTTCTGTTTTTTTCACCTATGCGGACCCTCCTAGTCTTGACTTGTGGCATCAATGATAAGGGTAATCTAGTCTGTTAATTGTTCAACAAGTTGTTAAACATTGTTAATCGTCTATTGTGTCTAATAAAGCTTCTTCTTTTTGTTATACTTGTGTTATTGGAAAGAATCATGTTCTCCCTTTGTGATGCTTGTGCTAATGTGTTAAGGGATTGTGCATTGTATGATGTGAGAATTCATGTGTTATTGGCATAGCATAATGTGGAATGTATGTGTTAAAGTGGTCTTTGGTTTATATTGCTTGTGTTTGAATGCAAAGCATGATGTTTAAGTTAGTTAGTTGCAAAAGTATGTTTGGATGTGTGTGAACAACATGTTGATTGTTGTTTGTTGGTTGGTGGCTCCCAGGTATGAGCTAATTACTCAGTGCGTGTTATATATTGACCCATCACCAGATTTTGCAGGTGATGACTAACTATGAGGAACTTGGTGATGTTGACAAGGAAGCATGCTAAGGAGACCCTTCTTTGTTGGAGTTCTGCTAGGGTTGCTAGATAGGGTTTAGATGTTCATTTTCATGAATAAGAGCATGTAAAGACATTTTTGGTTATTTAATTATCATATTCGTTTTGTGTTGCATATATAGGTTCTTTTGGTAGGGCTTAAGTTCAGGATTATTGGCTTTTGGTTTACTAACGTATTTATTGTTTCCGCTCTGATTTAATTTGAATACGTGTTAAGTAGTTGAGGTTTTTTGTACTTCGAAGTGTTGGATTTGAAACGTAGTTTGAAGGTGGAGCTTTGGG

mRNA sequence

GTTTTATGTGTTTCTGCCTCTCTATATATTTGAGACTACCCTCTATATCAAAATAATTCATTGAGAATTCAATGACTTGAATACGTTTGGCATTTTGTTCAGTTTGATTTTCAGTATTTTTGTTACATTTATAATGGTATCAGAGCTACAGTCTTGCGACTACTTTTTTTTTCTTCTCCTTTTCGATGGAGTCTTCTAAAGCAAACTCTGAATTGTCAAGCTTCAAACTACATCAATAATCAACCTGGGAATAAGGTCTTGATGGTCAAATTGAGTAATGAAAATTTTCTTCTCTGGAAGTTTCAAATCGAATTTGCACTTGAAGGTCATGGGCTCTTGGAAAAGCATTTTGGTGAAAATTTAGGCCCTCCTCCCAAAACCCTACAATGTGTTCAGAGAATGTTCAAGATGTTATGGCACTCCTCCTCACTCATGAGAATCAGATTCAGAGTAAGGCTATAACACGGATGGAACACTACCCTCTGCTCATCTTTCCACTCATAATGTTATCTCTAAAGAAGAAGAAAACCAAAGAAGTGTTAACCATATGATGAGTTACCAAAATTTTAATAATAACAAGGGTCGAGGGCGAATGAATAATGGTCAAAATAGAGGAGGGCGGTATTCATGGAGCAACTGCAATAAGCCACAATGCCAAATTTAATTTGTAATAAAATTGGTCATACAGCTACTAGATGTTATTTTCGTTATGCTCCTTCTCGTCTGAATGTTGTGCCTCCAGGTAACCGTTCTTCTTCCCCTGAAGATTTTGGACAACCTAATTATGGCGTTCAATCTCCTCATATGGTTTTGATTACTACACCAAACTACAATCAAGATTGCAATTGGTACCCTGGTTTTGGAGCAAAATATCACCTTACAAACAATTTTGGCAATCTTTCAGTGAGTTCTGACTATCTTGGCAATAATCAAGTTCATGTTGGTAATGATGTCGATTTGTCTATCTCTCACTTTGGTTATGGCAGTATTACTTCCCCTCCCAACCAAACGTTTCACCTAAATAATCTTTTGCATGTTCCTTCAATAACCAAAAATTTGATTAGTGTTAGTCAATTTGCTAATGATAATTCTGTTTTTTTTTTAATTTCATCCTAAATTTTGTTTTGTGAAGAATCTAACAACTTGTTATTCTAAGGATACTCTCCATGATGGCCTATACCGTTTCAATCTATCGCCTCAACATCATTTATTCAACAAGCATCCTCAAGCTAATGTTTCCTCAACAATATTGTCTTTTCCCTTAGGTTCTGTTTTTTTCACCTATGCGGACCCTCCTAGTCTTGACTTGTGGCATCAATGATAAGGGTAATCTAGTCTGTTAATTGTTCAACAAGTTGTTAAACATTGTTAATCGTCTATTGTGTCTAATAAAGCTTCTTCTTTTTGTTATACTTGTGTTATTGGAAAGAATCATGTTCTCCCTTTGTGATGCTTGTGCTAATGTGTTAAGGGATTGTGCATTGTATGATGTGAGAATTCATGTGTTATTGGCATAGCATAATGTGGAATGTATGTGTTAAAGTGGTCTTTGGTTTATATTGCTTGTGTTTGAATGCAAAGCATGATGTTTAAGTTAGTTAGTTGCAAAAGTATGTTTGGATGTGTGTGAACAACATGTTGATTGTTGTTTGTTGGTTGGTGGCTCCCAGGTATGAGCTAATTACTCAGTGCGTGTTATATATTGACCCATCACCAGATTTTGCAGGTGATGACTAACTATGAGGAACTTGGTGATGTTGACAAGGAAGCATGCTAAGGAGACCCTTCTTTGTTGGAGTTCTGCTAGGGTTGCTAGATAGGGTTTAGATGTTCATTTTCATGAATAAGAGCATGTAAAGACATTTTTGGTTATTTAATTATCATATTCGTTTTGTGTTGCATATATAGGTTCTTTTGGTAGGGCTTAAGTTCAGGATTATTGGCTTTTGGTTTACTAACGTATTTATTGTTTCCGCTCTGATTTAATTTGAATACGTGTTAAGTAGTTGAGGTTTTTTGTACTTCGAAGTGTTGGATTTGAAACGTAGTTTGAAGGTGGAGCTTTGGG

Coding sequence (CDS)

ATGCCAAATTTAATTTGTAATAAAATTGGTCATACAGCTACTAGATGTTATTTTCGTTATGCTCCTTCTCGTCTGAATGTTGTGCCTCCAGGTAACCGTTCTTCTTCCCCTGAAGATTTTGGACAACCTAATTATGGCGTTCAATCTCCTCATATGGTTTTGATTACTACACCAAACTACAATCAAGATTGCAATTGGTACCCTGGTTTTGGAGCAAAATATCACCTTACAAACAATTTTGGCAATCTTTCAGTGAGTTCTGACTATCTTGGCAATAATCAAGTTCATGTTGGTAATGATGTCGATTTGTCTATCTCTCACTTTGGTTATGGCAGTATTACTTCCCCTCCCAACCAAACGTTTCACCTAAATAATCTTTTGCATGTTCCTTCAATAACCAAAAATTTGATTAGTGTTAGTCAATTTGCTAATGATAATTCTGTTTTTTTTTTAATTTCATCCTAA

Protein sequence

MPNLICNKIGHTATRCYFRYAPSRLNVVPPGNRSSSPEDFGQPNYGVQSPHMVLITTPNYNQDCNWYPGFGAKYHLTNNFGNLSVSSDYLGNNQVHVGNDVDLSISHFGYGSITSPPNQTFHLNNLLHVPSITKNLISVSQFANDNSVFFLISS

Homology

[Close]

BLAST of Tan0021202 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.5e-11
Identity = 52/147 (35.37%), Postives = 75/147 (51.02%), Query Frame = 0


Query: 5   ICNKIGHTATRC-YFRYAPSRLNVVPPGNRSSSPEDFGQP--NYGVQSPHMVLITTPNYN 64
           IC   GH+A RC   ++  S +N   P     SP    QP  N  + SP+          
Sbjct: 281 ICGVQGHSAKRCSQLQHFLSSVNSQQP----PSPFTPWQPRANLALGSPY---------- 340

Query: 65  QDCNWYPGFGAKYHLTNNFGNLSVSSDYLGNNQVHVGNDVDLSISHFGYGSITSPPNQTF 124
              NW    GA +H+T++F NLS+   Y G + V V +   + ISH G  S+ S  ++  
Sbjct: 341 SSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSL-STKSRPL 400

Query: 125 HLNNLLHVPSITKNLISVSQFANDNSV 149
           +L+N+L+VP+I KNLISV +  N N V
Sbjct: 401 NLHNILYVPNIHKNLISVYRLCNANGV 412

[Close]

BLAST of Tan0021202 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.3e-11
Identity = 50/146 (34.25%), Postives = 75/146 (51.37%), Query Frame = 0


Query: 5   ICNKIGHTATRCYFRYAPSRLNVVPPGNRSSSPEDFGQP--NYGVQSPHMVLITTPNYNQ 64
           IC+  GH+A RC   +   +        +S+SP    QP  N  V SP         YN 
Sbjct: 260 ICSVQGHSAKRCPQLH---QFQSTTNQQQSTSPFTPWQPRANLAVNSP---------YNA 319

Query: 65  DCNWYPGFGAKYHLTNNFGNLSVSSDYLGNNQVHVGNDVDLSISHFGYGSITSPPNQTFH 124
           + NW    GA +H+T++F NLS    Y G + V + +   + I+H G  S+ +  +++  
Sbjct: 320 N-NWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPT-SSRSLD 379

Query: 125 LNNLLHVPSITKNLISVSQFANDNSV 149
           LN +L+VP+I KNLISV +  N N V
Sbjct: 380 LNKVLYVPNIHKNLISVYRLCNTNRV 391

[Close]

BLAST of Tan0021202 vs. NCBI nr
Match: XP_022147537.1 (uncharacterized protein LOC111016442 [Momordica charantia])

HSP 1 Score: 128.6 bits (322), Expect = 4.5e-26
Identity = 64/103 (62.14%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 49  SPHM-VLITTPNYNQDCNWYPGFGAKYHLTNNFGNLSVSSDYLGNNQVHVGNDVDLSISH 108
           SP M  L+TT + N D NWYP  GA  HLT+NF NL V ++YL +NQV VGN     I H
Sbjct: 88  SPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVVGTEYLDSNQVQVGNGACFDIFH 147

Query: 109 FGYGSITSPPNQTFHLNNLLHVPSITKNLISVSQFANDNSVFF 151
           FG+ S  SP N+  HLNNLLHVP ITKNLISVSQFA DNS+FF
Sbjct: 148 FGHSSFQSPTNRILHLNNLLHVPQITKNLISVSQFAKDNSIFF 190

[Close]

BLAST of Tan0021202 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 3.2e-24
Identity = 68/149 (45.64%), Postives = 89/149 (59.73%), Query Frame = 0


Query: 5   ICNKIGHTATRCYFRYAP-SRLNVVPPGNRSSSPEDFGQPNYGVQSPHMVLITTPNYNQD 64
           IC K+G++A RC+FRY P S  +   P + ++S       N         ++   + N D
Sbjct: 291 ICAKLGYSADRCFFRYTPRSNSSGYSPNSHNTS-----YTNMNNHPQMSAMVAALDLNID 350

Query: 65  CNWYPGFGAKYHLTNNFGNLSVSSDYLGNNQVHVGNDVDLSISHFGYGSITSP--PNQTF 124
            NWYP  GA  HLT++  NLS+ S+Y G NQ++  N   L I+H+G  S  S   P ++F
Sbjct: 351 SNWYPDSGATNHLTHSLSNLSIGSEYGGGNQIYAANGSGLPITHYGSMSFNSSTLPFKSF 410

Query: 125 HLNNLLHVPSITKNLISVSQFANDNSVFF 151
            LNNLL VPSITKNLISVSQFA DN VFF
Sbjct: 411 TLNNLLQVPSITKNLISVSQFAKDNHVFF 434

[Close]

BLAST of Tan0021202 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 3.2e-24
Identity = 68/149 (45.64%), Postives = 89/149 (59.73%), Query Frame = 0


Query: 5   ICNKIGHTATRCYFRYAP-SRLNVVPPGNRSSSPEDFGQPNYGVQSPHMVLITTPNYNQD 64
           IC K+G++A RC+FRY P S  +   P + ++S       N         ++   + N D
Sbjct: 291 ICAKLGYSADRCFFRYTPRSNSSGYSPNSHNTS-----YTNMNNHPQMSAMVAALDLNID 350

Query: 65  CNWYPGFGAKYHLTNNFGNLSVSSDYLGNNQVHVGNDVDLSISHFGYGSITSP--PNQTF 124
            NWYP  GA  HLT++  NLS+ S+Y G NQ++  N   L I+H+G  S  S   P ++F
Sbjct: 351 SNWYPDSGATNHLTHSLSNLSIGSEYGGGNQIYAANGSGLPITHYGSMSFNSSTLPFKSF 410

Query: 125 HLNNLLHVPSITKNLISVSQFANDNSVFF 151
            LNNLL VPSITKNLISVSQFA DN VFF
Sbjct: 411 TLNNLLQVPSITKNLISVSQFAKDNHVFF 434

[Close]

BLAST of Tan0021202 vs. NCBI nr
Match: KYP46802.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-23
Identity = 65/147 (44.22%), Postives = 82/147 (55.78%), Query Frame = 0


Query: 5   ICNKIGHTATRCYFRYAPSRLNVVPPGNRSSSPEDFGQPNYGVQSPHMVLITTPNYNQDC 64
           IC KIGH A  CY+RY     N     N    P        G        + TP+  QD 
Sbjct: 302 ICGKIGHIALNCYYRYNQEYQNHPQANNTQFQPS-------GYDISETTTLATPSTVQDP 361

Query: 65  NWYPGFGAKYHLTNNFGNLSVSSDYLGNNQVHVGNDVDLSISHFGYGSITSP-PNQTFHL 124
            WYP  GA YH+T++  NLS+ S Y G + V++GN   L ISH G+    +P  ++ F  
Sbjct: 362 LWYPDSGASYHITHDESNLSMKSAYTGTDSVNIGNSTGLHISHVGHSYFHNPMSSKHFVR 421

Query: 125 NNLLHVPSITKNLISVSQFANDNSVFF 151
           +NLLHVPSITKNL+SVS+FA DN VFF
Sbjct: 422 HNLLHVPSITKNLLSVSKFARDNRVFF 441

[Close]

BLAST of Tan0021202 vs. NCBI nr
Match: CAN81099.1 (hypothetical protein VITISV_017741 [Vitis vinifera])

HSP 1 Score: 119.0 bits (297), Expect = 3.6e-23
Identity = 66/147 (44.90%), Postives = 84/147 (57.14%), Query Frame = 0


Query: 5   ICNKIGHTATRCYFRYAPSRLNVVPPGNRSSSPEDFGQPNYGVQSPHMVLITTPNYNQDC 64
           +C KIGH   +CY+R+  +        +R+SSP  +    Y        +I T     D 
Sbjct: 312 LCGKIGHVVAQCYYRFDHTFQVPQNLSSRNSSPRAY----YSFSPQVNGVIPTSEVFSDD 371

Query: 65  NWYPGFGAKYHLTNNFGNLSVSSDYLGNNQVHVGNDVDLSISHFGYGSITSP-PNQTFHL 124
           NWYP  GA  H+T N  NL  S+++ G NQVHVGN   LSI H G     SP  ++   L
Sbjct: 372 NWYPDSGASNHVTPNPENLMKSAEFAGQNQVHVGNGTGLSIKHIGQSEFLSPFSSKPLLL 431

Query: 125 NNLLHVPSITKNLISVSQFANDNSVFF 151
           N+LLHVPSITKNL+SVS+FA DN VFF
Sbjct: 432 NHLLHVPSITKNLLSVSKFAKDNKVFF 454

[Close]

BLAST of Tan0021202 vs. ExPASy TrEMBL
Match: A0A6J1D2M1 (uncharacterized protein LOC111016442 OS=Momordica charantia OX=3673 GN=LOC111016442 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.2e-26
Identity = 64/103 (62.14%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 49  SPHM-VLITTPNYNQDCNWYPGFGAKYHLTNNFGNLSVSSDYLGNNQVHVGNDVDLSISH 108
           SP M  L+TT + N D NWYP  GA  HLT+NF NL V ++YL +NQV VGN     I H
Sbjct: 88  SPQMSALLTTLHLNHDTNWYPDLGATNHLTHNFNNLVVGTEYLDSNQVQVGNGACFDIFH 147

Query: 109 FGYGSITSPPNQTFHLNNLLHVPSITKNLISVSQFANDNSVFF 151
           FG+ S  SP N+  HLNNLLHVP ITKNLISVSQFA DNS+FF
Sbjct: 148 FGHSSFQSPTNRILHLNNLLHVPQITKNLISVSQFAKDNSIFF 190

[Close]

BLAST of Tan0021202 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-24
Identity = 68/149 (45.64%), Postives = 89/149 (59.73%), Query Frame = 0


Query: 5   ICNKIGHTATRCYFRYAP-SRLNVVPPGNRSSSPEDFGQPNYGVQSPHMVLITTPNYNQD 64
           IC K+G++A RC+FRY P S  +   P + ++S       N         ++   + N D
Sbjct: 291 ICAKLGYSADRCFFRYTPRSNSSGYSPNSHNTS-----YTNMNNHPQMSAMVAALDLNID 350

Query: 65  CNWYPGFGAKYHLTNNFGNLSVSSDYLGNNQVHVGNDVDLSISHFGYGSITSP--PNQTF 124
            NWYP  GA  HLT++  NLS+ S+Y G NQ++  N   L I+H+G  S  S   P ++F
Sbjct: 351 SNWYPDSGATNHLTHSLSNLSIGSEYGGGNQIYAANGSGLPITHYGSMSFNSSTLPFKSF 410

Query: 125 HLNNLLHVPSITKNLISVSQFANDNSVFF 151
            LNNLL VPSITKNLISVSQFA DN VFF
Sbjct: 411 TLNNLLQVPSITKNLISVSQFAKDNHVFF 434

[Close]

BLAST of Tan0021202 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-24
Identity = 68/149 (45.64%), Postives = 89/149 (59.73%), Query Frame = 0


Query: 5   ICNKIGHTATRCYFRYAP-SRLNVVPPGNRSSSPEDFGQPNYGVQSPHMVLITTPNYNQD 64
           IC K+G++A RC+FRY P S  +   P + ++S       N         ++   + N D
Sbjct: 291 ICAKLGYSADRCFFRYTPRSNSSGYSPNSHNTS-----YTNMNNHPQMSAMVAALDLNID 350

Query: 65  CNWYPGFGAKYHLTNNFGNLSVSSDYLGNNQVHVGNDVDLSISHFGYGSITSP--PNQTF 124
            NWYP  GA  HLT++  NLS+ S+Y G NQ++  N   L I+H+G  S  S   P ++F
Sbjct: 351 SNWYPDSGATNHLTHSLSNLSIGSEYGGGNQIYAANGSGLPITHYGSMSFNSSTLPFKSF 410

Query: 125 HLNNLLHVPSITKNLISVSQFANDNSVFF 151
            LNNLL VPSITKNLISVSQFA DN VFF
Sbjct: 411 TLNNLLQVPSITKNLISVSQFAKDNHVFF 434

[Close]

BLAST of Tan0021202 vs. ExPASy TrEMBL
Match: A0A151RW78 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_031575 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.0e-23
Identity = 65/147 (44.22%), Postives = 82/147 (55.78%), Query Frame = 0


Query: 5   ICNKIGHTATRCYFRYAPSRLNVVPPGNRSSSPEDFGQPNYGVQSPHMVLITTPNYNQDC 64
           IC KIGH A  CY+RY     N     N    P        G        + TP+  QD 
Sbjct: 302 ICGKIGHIALNCYYRYNQEYQNHPQANNTQFQPS-------GYDISETTTLATPSTVQDP 361

Query: 65  NWYPGFGAKYHLTNNFGNLSVSSDYLGNNQVHVGNDVDLSISHFGYGSITSP-PNQTFHL 124
            WYP  GA YH+T++  NLS+ S Y G + V++GN   L ISH G+    +P  ++ F  
Sbjct: 362 LWYPDSGASYHITHDESNLSMKSAYTGTDSVNIGNSTGLHISHVGHSYFHNPMSSKHFVR 421

Query: 125 NNLLHVPSITKNLISVSQFANDNSVFF 151
           +NLLHVPSITKNL+SVS+FA DN VFF
Sbjct: 422 HNLLHVPSITKNLLSVSKFARDNRVFF 441

[Close]

BLAST of Tan0021202 vs. ExPASy TrEMBL
Match: A5BFT3 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_017741 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.7e-23
Identity = 66/147 (44.90%), Postives = 84/147 (57.14%), Query Frame = 0


Query: 5   ICNKIGHTATRCYFRYAPSRLNVVPPGNRSSSPEDFGQPNYGVQSPHMVLITTPNYNQDC 64
           +C KIGH   +CY+R+  +        +R+SSP  +    Y        +I T     D 
Sbjct: 312 LCGKIGHVVAQCYYRFDHTFQVPQNLSSRNSSPRAY----YSFSPQVNGVIPTSEVFSDD 371

Query: 65  NWYPGFGAKYHLTNNFGNLSVSSDYLGNNQVHVGNDVDLSISHFGYGSITSP-PNQTFHL 124
           NWYP  GA  H+T N  NL  S+++ G NQVHVGN   LSI H G     SP  ++   L
Sbjct: 372 NWYPDSGASNHVTPNPENLMKSAEFAGQNQVHVGNGTGLSIKHIGQSEFLSPFSSKPLLL 431

Query: 125 NNLLHVPSITKNLISVSQFANDNSVFF 151
           N+LLHVPSITKNL+SVS+FA DN VFF
Sbjct: 432 NHLLHVPSITKNLLSVSKFAKDNKVFF 454

The following BLAST results are available for this feature:

BLAST of Tan0021202 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	2.5e-11	35.37	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.3e-11	34.25	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Tan0021202 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147537.1	4.5e-26	62.14	uncharacterized protein LOC111016442 [Momordica charantia]	[more]
KAA0048297.1	3.2e-24	45.64	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK10642.1	3.2e-24	45.64	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KYP46802.1	2.1e-23	44.22	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
CAN81099.1	3.6e-23	44.90	hypothetical protein VITISV_017741 [Vitis vinifera]	[more]

BLAST of Tan0021202 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D2M1	2.2e-26	62.14	uncharacterized protein LOC111016442 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A5A7U233	1.6e-24	45.64	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CH97	1.6e-24	45.64	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A151RW78	1.0e-23	44.22	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]
A5BFT3	1.7e-23	44.90	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]

BLAST of Tan0021202 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0021202.1	Tan0021202.1	mRNA