Tan0021052 (gene) Snake gourd v1

Overview


Name	Tan0021052
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gypsy-like retrotransposase
Location	LG03: 64965728 .. 64968685 (+)
RNA-Seq Expression	Tan0021052
Synteny	Tan0021052

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGACATTAGTGAGGAAAGAATGGTTGAATTTGTAAAGAAGATCAACATGTTATTGAAGTCAATTGAAGAAAGAGATTATGAAATCACTTCTCTCAAGAATCAAATTGAAAGTCGGGATGCTGCTGAATCAAGTCAAACCCCTGCTGTCAGAAATAAGGGAAAGACCTCTATACAAGAAGTTCATACACAACATTCCACTTCAATTGCTTCATTGTCTGTCCAACAACTCCAGGATATGATTACAAACTCCATCAGAGCACAATATGGTGGGTCTACTCAAAACTCTCTTATGTATTCCAAGCCATATACTAAGAGAATTGACAACCTAAGAATGCCTAATGGATACCAGCCGCCAAAGTTCCAACAATTCGACGGGAAGGGCAATCCCAAACAACACATTGCTCACTTCATTGAGGCATGTGAAAATGCTGGTACTAGAGGAGATCTGTTAGTCAAACAATTCGTTCGAACCTTGAAAGGAAATGTTTTCGACTGGTATACTGACCTCGAACCAGAGATTATTGACAGTTGGGAACAATTTGAAAAGGAGTTCCTCAACCGTTTCTATAATACGAGGCGAACCGTCAGCATGATGGAACTTACAAATGCTAAGCAACGGAAAGGTGAACCGGTCGTTGACTACATCAATCGTTGGAGAGCTTTAAGCCTCGACTGCAAAGATAGACTAACTGAAGTATCTGCAGTTGAAATGTGCATCCAAGGCATGCATTGGGGACTTCTCTACATTCTACAAGGGATAAAGCCTCGAACTTTCGAAGAACTAGCTACTCGTGCTCATGACATGGAATTAAGCATAGCTAGCAGAGGAAATAAAGACCTTCTCGTTTCAGATGTCAAGAAAGAGAAGAAAGAAATTAAGAACGTCGAGAAAATTTCCAAAGGCACTACCAAGGAATCGATGGTCATTAACACAACTCCTCTCAAGTTTGTTGCCAAAGAAAAAGAAAAGAAGGTTGAAAAAGCACAAGAGGGAGGCGAGAGACGCCGACTAACTCTAAAGGAGAGACAAGAGAAAGTTTACCATTTTCCAGATTCAGACATCGCAGATATGTTAGAGCAACTCCTCGAAAAGCAACTTATTGAACTACCTGAATGTAAGCGACCCGAAGAGATGAGAAGGGTCAATGATCCTAACTACTGCAAGTATCACCGAGTCATTAGTCACCCGGTGGAGAAATGCTTTGTTTTGAAAGAGTTAATTCTGAAATTAGCTAAGGAAAGGAAGATTGAGTTGGATCTAGATGAAGTAGTCCAATCGAACCACGCTGCGATAGCAACAAGTCTCAGCAGCCAAACATCTTCAAGCCTACGACATGACCTAGAAGCAAGCTTGATCCAATTTGGGACTTTAGAGCCTGTGAAAATTTGGTTGCAGCGAGAATTTCCAAATACCTCCTATGGTCAGCTTAAGCATACTGAAAATGAAGATGAAGGATGGACTTTAGTAACGCGTCGAAAGAAGCAAAAACAACGATGCATCCAGAGAGAATCACACACGTTTCGAAACTACAAGAGGAAAAATGTGCCACGAAAGAAGAACAAAAAGATCAAAAGTTGGAGGAAATGCAAGCTAGTTAAGGAAGAGAACGAAGACTTTGTTCGACCTCGACAACCAATAACGTTGAACGATTTCTTGCCAAGGGGCTTCCTTAATAACTACAGCAAAGATGTCCCTGAAATTACCACGTGTCATGTGGTTAACGTATCTGCAGAAGGGGGTTCATCCTCTAATCTATCTCAAATGACAACAAAGTCAGAAAGCTTGGCTTTACTCGATACAAATGATTTGTTGTCACTTCCTCAAGCGACTGATGATATTGCTATTGAAGCATAAAAAATCTCTACTGTTTCAAAGATTTTAGGTCCTCAAGTACATCTGTGTGCCTCATGTTGCATGTCCATCAGCTTCACAGACGAAGATCTGATGTTGGGATCGAAACCTCACAATAGACCCTTATTTGTCTCGGGTTACATCCGAGAACAAAAAGTAGGTCGAATCCTTATCAACGATGAGTCTGCCGTCAACATCATGCCTAAATCAACAATGACACAGATAGGCATCTCGATGTATGAACTTGCAAATAGTAGATTGGCTATCCAAGGATTCAATCAAGGGGGTCAGAGAGCAATCGCCATGATTCGCTTAGAGCTTAATATTGGAGAATTGAAGGCTAACACCTTTTTCCATATTATAGATTCCAAGACCACCTACAAACTACTATTAGGTCACCCTTGGATCCATGGAAATGTAGTAATATCTTCCACACTTCATCAGTGTTTCAAATTTTATCAAAACGGGGTCAAGAAAGTCGAAGCAGATACTAATCCCTTCTCAGAGACAGAGTCCCACTTTGCCGATGCAAAATTCTATATGCAGAATGATAAAGGATGAGAGATCGTGCCAACTGAAATACGTTTGATTGCAAATCACAAGGTAGAGAACCAAAAGCACATAAAGAAAGAGTCGATTGAAGAGGTAGACGCTTGTGAAGTTAAAACAAGTAAGCCATCTACCAACTCTGCAAAGGAAAAGGTTTCAAATGAAGAAAAATCATCAAATCTTCCAGTATTGTGTTACATCCCTTTATCACGACGTAAAAAGGGAGAATCGCCATTTACAGAATGCTCAGAAAACTTGAAATCTGGTGATGTGGAAATCCTAAAAGAAAGTTTCATCACACCTCTAACAGTAATCACCAAGCAAGAAATTCGGAATTCGAAAGTTGATAATGCAAAAATGGCCTTGCCTGAAAGAAGAACGAAGGATGAGTTTGATCCTAAAGCATACAAACTCCTATCAAATGCAGGTTACGACTTCACAACTCACACTACGTTCAAAAGTTTAAAAATTTTCGATGAGAGGCCTGAGCTTTCTTCAACACAAAAGAAACTTTTAAAGAAATGTTATATGACACCCACGTCAAGAAAATGA

mRNA sequence

ATGGCAGACATTAGTGAGGAAAGAATGGTTGAATTTGTAAAGAAGATCAACATGTTATTGAAGTCAATTGAAGAAAGAGATTATGAAATCACTTCTCTCAAGAATCAAATTGAAAGTCGGGATGCTGCTGAATCAAGTCAAACCCCTGCTGTCAGAAATAAGGGAAAGACCTCTATACAAGAAGTTCATACACAACATTCCACTTCAATTGCTTCATTGTCTGTCCAACAACTCCAGGATATGATTACAAACTCCATCAGAGCACAATATGAGCCTGTGAAAATTTGGTTGCAGCGAGAATTTCCAAATACCTCCTATGGTCAGCTTAAGCATACTGAAAATGAAGATGAAGGATGGACTTTAGTAACGCGTCGAAAGAAGCAAAAACAACGATGCATCCAGAGAGAATCACACACGTTTCGAAACTACAAGAGGAAAAATGTGCCACGAAAGAAGAACAAAAAGATCAAAAGTTGGAGGAAATGCAAGCTAGTTAAGGAAGAGAACGAAGACTTTCACATAAAGAAAGAGTCGATTGAAGAGGTAGACGCTTGTGAAGTTAAAACAAGTAAGCCATCTACCAACTCTGCAAAGGAAAAGGTTTCAAATGAAGAAAAATCATCAAATCTTCCAGTATTGTGTTACATCCCTTTATCACGACGTAAAAAGGGAGAATCGCCATTTACAGAATGCTCAGAAAACTTGAAATCTGGTGATGTGGAAATCCTAAAAGAAAGTTTCATCACACCTCTAACAGTAATCACCAAGCAAGAAATTCGGAATTCGAAAGTTGATAATGCAAAAATGGCCTTGCCTGAAAGAAGAACGAAGGATGAGTTTGATCCTAAAGCATACAAACTCCTATCAAATGCAGGTTACGACTTCACAACTCACACTACGTTCAAAAGTTTAAAAATTTTCGATGAGAGGCCTGAGCTTTCTTCAACACAAAAGAAACTTTTAAAGAAATGTTATATGACACCCACGTCAAGAAAATGA

Coding sequence (CDS)

ATGGCAGACATTAGTGAGGAAAGAATGGTTGAATTTGTAAAGAAGATCAACATGTTATTGAAGTCAATTGAAGAAAGAGATTATGAAATCACTTCTCTCAAGAATCAAATTGAAAGTCGGGATGCTGCTGAATCAAGTCAAACCCCTGCTGTCAGAAATAAGGGAAAGACCTCTATACAAGAAGTTCATACACAACATTCCACTTCAATTGCTTCATTGTCTGTCCAACAACTCCAGGATATGATTACAAACTCCATCAGAGCACAATATGAGCCTGTGAAAATTTGGTTGCAGCGAGAATTTCCAAATACCTCCTATGGTCAGCTTAAGCATACTGAAAATGAAGATGAAGGATGGACTTTAGTAACGCGTCGAAAGAAGCAAAAACAACGATGCATCCAGAGAGAATCACACACGTTTCGAAACTACAAGAGGAAAAATGTGCCACGAAAGAAGAACAAAAAGATCAAAAGTTGGAGGAAATGCAAGCTAGTTAAGGAAGAGAACGAAGACTTTCACATAAAGAAAGAGTCGATTGAAGAGGTAGACGCTTGTGAAGTTAAAACAAGTAAGCCATCTACCAACTCTGCAAAGGAAAAGGTTTCAAATGAAGAAAAATCATCAAATCTTCCAGTATTGTGTTACATCCCTTTATCACGACGTAAAAAGGGAGAATCGCCATTTACAGAATGCTCAGAAAACTTGAAATCTGGTGATGTGGAAATCCTAAAAGAAAGTTTCATCACACCTCTAACAGTAATCACCAAGCAAGAAATTCGGAATTCGAAAGTTGATAATGCAAAAATGGCCTTGCCTGAAAGAAGAACGAAGGATGAGTTTGATCCTAAAGCATACAAACTCCTATCAAATGCAGGTTACGACTTCACAACTCACACTACGTTCAAAAGTTTAAAAATTTTCGATGAGAGGCCTGAGCTTTCTTCAACACAAAAGAAACTTTTAAAGAAATGTTATATGACACCCACGTCAAGAAAATGA

Protein sequence

MADISEERMVEFVKKINMLLKSIEERDYEITSLKNQIESRDAAESSQTPAVRNKGKTSIQEVHTQHSTSIASLSVQQLQDMITNSIRAQYEPVKIWLQREFPNTSYGQLKHTENEDEGWTLVTRRKKQKQRCIQRESHTFRNYKRKNVPRKKNKKIKSWRKCKLVKEENEDFHIKKESIEEVDACEVKTSKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERRTKDEFDPKAYKLLSNAGYDFTTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK

Homology

[Close]

BLAST of Tan0021052 vs. NCBI nr
Match: KAA0062018.1 (uncharacterized protein E6C27_scaffold89G003490 [Cucumis melo var. makuwa])

HSP 1 Score: 180.3 bits (456), Expect = 2.8e-41
Identity = 96/157 (61.15%), Postives = 122/157 (77.71%), Query Frame = 0


Query: 176 KESIEEVDACEVKTSKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENL 235
           KE  + +     + S+ ST++AK  +  +EK+SN P+LCY+PLSRRKKGESPF E S+ L
Sbjct: 223 KEPHKSIGTFHSEKSEASTSTAKSVILMDEKTSNPPILCYVPLSRRKKGESPFVESSQGL 282

Query: 236 KSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERRTKDEFDPKAYKLLSNAGYDF 295
           K GD+E+LKESF TPLT ITKQEI   K+D  + +LP+RRTKDEFDPKAYKL++ AGYDF
Sbjct: 283 KVGDIEVLKESFTTPLTKITKQEI---KIDLTEASLPKRRTKDEFDPKAYKLMAKAGYDF 342

Query: 296 TTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK 333
           TTHT FKSLKI  E+P++SSTQKKLL++ +  P SRK
Sbjct: 343 TTHTEFKSLKI-HEQPKISSTQKKLLREGHAIPMSRK 375

[Close]

BLAST of Tan0021052 vs. NCBI nr
Match: KAA0051585.1 (uncharacterized protein E6C27_scaffold174G001280 [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 3.4e-39
Identity = 94/157 (59.87%), Postives = 120/157 (76.43%), Query Frame = 0


Query: 176 KESIEEVDACEVKTSKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENL 235
           KE  + +       S+ STN+AK  +  +EK+SN P+L Y+PLSRRKKGESPF E  + L
Sbjct: 298 KEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQGL 357

Query: 236 KSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERRTKDEFDPKAYKLLSNAGYDF 295
           K G++E+LKESF TPLT ITKQEI   K+D  + +LP+RRTKD FDPKAYKL++ AGYDF
Sbjct: 358 KVGEIEVLKESFTTPLTKITKQEI---KIDLTEASLPQRRTKDGFDPKAYKLMAKAGYDF 417

Query: 296 TTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK 333
           TTHT FKSLKI+ E+P+LSSTQKKLL++ ++ P SRK
Sbjct: 418 TTHTEFKSLKIY-EQPKLSSTQKKLLREGHVIPMSRK 450

[Close]

BLAST of Tan0021052 vs. NCBI nr
Match: TYK05005.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 170.2 bits (430), Expect = 2.9e-38
Identity = 94/157 (59.87%), Postives = 118/157 (75.16%), Query Frame = 0


Query: 176 KESIEEVDACEVKTSKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENL 235
           KE    +     + S+ ST++AK  +  +EK+SN  +L Y+PLSRRKKGESPF E  + L
Sbjct: 665 KEPHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGESPFVESPQGL 724

Query: 236 KSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERRTKDEFDPKAYKLLSNAGYDF 295
           K GD+E+LKESF TPLT ITKQEI   K+D  + +LP+RRTKDEFDPKAYKL++ AGYDF
Sbjct: 725 KVGDIEVLKESFTTPLTKITKQEI---KIDLTEASLPQRRTKDEFDPKAYKLMAKAGYDF 784

Query: 296 TTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK 333
           TTHT FKSLKI  E+P+LSSTQKKLL++ +  P SRK
Sbjct: 785 TTHTEFKSLKI-HEQPKLSSTQKKLLREGHAIPMSRK 817

[Close]

BLAST of Tan0021052 vs. NCBI nr
Match: TYK05005.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-04
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 90  YEPVKIWLQREF-PNTSYGQLKHTENEDEGWTLVTRRKKQKQRCIQRESHTFRNYKRKNV 149
           +EPV +   +E  P  S  + +  E +DE WT+VTRRKK+K   IQ+E   +RNY+R N 
Sbjct: 347 FEPVVVRFHQEVAPEDSQEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWN- 406

Query: 150 PRKKNKKIKSWRKCKLVKEENEDF 173
             +KNKK K  RK KL+ +E++DF
Sbjct: 407 KAQKNKKKKKTRKLKLMHKEDKDF 429

HSP 2 Score: 169.5 bits (428), Expect = 5.0e-38
Identity = 90/143 (62.94%), Postives = 114/143 (79.72%), Query Frame = 0


Query: 190 SKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFIT 249
           S+ ST++AK  +  +EK+SN P+L Y+PLSRRKKGESPF E S+ LK GD+E+L+ESF T
Sbjct: 212 SEASTSTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESSQALKVGDIEVLRESFTT 271

Query: 250 PLTVITKQEIRNSKVDNAKMALPERRTKDEFDPKAYKLLSNAGYDFTTHTTFKSLKIFDE 309
           PLT ITKQE   +K D  + +LP+RRTKD FDPKAYKL++ AGYDFTTH  FKSLKI  E
Sbjct: 272 PLTKITKQE---TKTDQTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHIEFKSLKI-HE 331

Query: 310 RPELSSTQKKLLKKCYMTPTSRK 333
           +P+LSSTQKKLL++ ++ P SRK
Sbjct: 332 QPKLSSTQKKLLREGHVIPMSRK 350

[Close]

BLAST of Tan0021052 vs. NCBI nr
Match: KAA0060429.1 (gypsy-like retrotransposase [Cucumis melo var. makuwa] >TYK18518.1 gypsy-like retrotransposase [Cucumis melo var. makuwa])

HSP 1 Score: 164.9 bits (416), Expect = 1.2e-36
Identity = 85/129 (65.89%), Postives = 104/129 (80.62%), Query Frame = 0


Query: 204 EEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSK 263
           +EK+SNLP+LCY+PLSRRKKGESPF E  + LK GD+E+LKESF TPLT ITKQEI   K
Sbjct: 5   DEKTSNLPILCYVPLSRRKKGESPFVESPQGLKVGDIEVLKESFTTPLTKITKQEI---K 64

Query: 264 VDNAKMALPERRTKDEFDPKAYKLLSNAGYDFTTHTTFKSLKIFDERPELSSTQKKLLKK 323
           +D  K +L ++RTKD FDPKAYKL++  GYDFTTH  FKSLKI  ++P+LSSTQKKLL++
Sbjct: 65  IDLTKASLRQKRTKDGFDPKAYKLMAKTGYDFTTHIEFKSLKI-HKQPKLSSTQKKLLQE 124

Query: 324 CYMTPTSRK 333
            +  P SRK
Sbjct: 125 GHAIPMSRK 129

[Close]

BLAST of Tan0021052 vs. ExPASy TrEMBL
Match: A0A5A7V356 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003490 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-41
Identity = 96/157 (61.15%), Postives = 122/157 (77.71%), Query Frame = 0


Query: 176 KESIEEVDACEVKTSKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENL 235
           KE  + +     + S+ ST++AK  +  +EK+SN P+LCY+PLSRRKKGESPF E S+ L
Sbjct: 223 KEPHKSIGTFHSEKSEASTSTAKSVILMDEKTSNPPILCYVPLSRRKKGESPFVESSQGL 282

Query: 236 KSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERRTKDEFDPKAYKLLSNAGYDF 295
           K GD+E+LKESF TPLT ITKQEI   K+D  + +LP+RRTKDEFDPKAYKL++ AGYDF
Sbjct: 283 KVGDIEVLKESFTTPLTKITKQEI---KIDLTEASLPKRRTKDEFDPKAYKLMAKAGYDF 342

Query: 296 TTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK 333
           TTHT FKSLKI  E+P++SSTQKKLL++ +  P SRK
Sbjct: 343 TTHTEFKSLKI-HEQPKISSTQKKLLREGHAIPMSRK 375

[Close]

BLAST of Tan0021052 vs. ExPASy TrEMBL
Match: A0A5A7UD46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G001280 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.7e-39
Identity = 94/157 (59.87%), Postives = 120/157 (76.43%), Query Frame = 0


Query: 176 KESIEEVDACEVKTSKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENL 235
           KE  + +       S+ STN+AK  +  +EK+SN P+L Y+PLSRRKKGESPF E  + L
Sbjct: 298 KEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQGL 357

Query: 236 KSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERRTKDEFDPKAYKLLSNAGYDF 295
           K G++E+LKESF TPLT ITKQEI   K+D  + +LP+RRTKD FDPKAYKL++ AGYDF
Sbjct: 358 KVGEIEVLKESFTTPLTKITKQEI---KIDLTEASLPQRRTKDGFDPKAYKLMAKAGYDF 417

Query: 296 TTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK 333
           TTHT FKSLKI+ E+P+LSSTQKKLL++ ++ P SRK
Sbjct: 418 TTHTEFKSLKIY-EQPKLSSTQKKLLREGHVIPMSRK 450

[Close]

BLAST of Tan0021052 vs. ExPASy TrEMBL
Match: A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.4e-38
Identity = 94/157 (59.87%), Postives = 118/157 (75.16%), Query Frame = 0


Query: 176 KESIEEVDACEVKTSKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENL 235
           KE    +     + S+ ST++AK  +  +EK+SN  +L Y+PLSRRKKGESPF E  + L
Sbjct: 665 KEPHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGESPFVESPQGL 724

Query: 236 KSGDVEILKESFITPLTVITKQEIRNSKVDNAKMALPERRTKDEFDPKAYKLLSNAGYDF 295
           K GD+E+LKESF TPLT ITKQEI   K+D  + +LP+RRTKDEFDPKAYKL++ AGYDF
Sbjct: 725 KVGDIEVLKESFTTPLTKITKQEI---KIDLTEASLPQRRTKDEFDPKAYKLMAKAGYDF 784

Query: 296 TTHTTFKSLKIFDERPELSSTQKKLLKKCYMTPTSRK 333
           TTHT FKSLKI  E+P+LSSTQKKLL++ +  P SRK
Sbjct: 785 TTHTEFKSLKI-HEQPKLSSTQKKLLREGHAIPMSRK 817

[Close]

BLAST of Tan0021052 vs. ExPASy TrEMBL
Match: A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.0e-05
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 90  YEPVKIWLQREF-PNTSYGQLKHTENEDEGWTLVTRRKKQKQRCIQRESHTFRNYKRKNV 149
           +EPV +   +E  P  S  + +  E +DE WT+VTRRKK+K   IQ+E   +RNY+R N 
Sbjct: 347 FEPVVVRFHQEVAPEDSQEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWN- 406

Query: 150 PRKKNKKIKSWRKCKLVKEENEDF 173
             +KNKK K  RK KL+ +E++DF
Sbjct: 407 KAQKNKKKKKTRKLKLMHKEDKDF 429

HSP 2 Score: 169.5 bits (428), Expect = 2.4e-38
Identity = 90/143 (62.94%), Postives = 114/143 (79.72%), Query Frame = 0


Query: 190 SKPSTNSAKEKVSNEEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFIT 249
           S+ ST++AK  +  +EK+SN P+L Y+PLSRRKKGESPF E S+ LK GD+E+L+ESF T
Sbjct: 212 SEASTSTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESSQALKVGDIEVLRESFTT 271

Query: 250 PLTVITKQEIRNSKVDNAKMALPERRTKDEFDPKAYKLLSNAGYDFTTHTTFKSLKIFDE 309
           PLT ITKQE   +K D  + +LP+RRTKD FDPKAYKL++ AGYDFTTH  FKSLKI  E
Sbjct: 272 PLTKITKQE---TKTDQTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHIEFKSLKI-HE 331

Query: 310 RPELSSTQKKLLKKCYMTPTSRK 333
           +P+LSSTQKKLL++ ++ P SRK
Sbjct: 332 QPKLSSTQKKLLREGHVIPMSRK 350

[Close]

BLAST of Tan0021052 vs. ExPASy TrEMBL
Match: A0A5A7V3U8 (Gypsy-like retrotransposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00120 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 5.9e-37
Identity = 85/129 (65.89%), Postives = 104/129 (80.62%), Query Frame = 0


Query: 204 EEKSSNLPVLCYIPLSRRKKGESPFTECSENLKSGDVEILKESFITPLTVITKQEIRNSK 263
           +EK+SNLP+LCY+PLSRRKKGESPF E  + LK GD+E+LKESF TPLT ITKQEI   K
Sbjct: 5   DEKTSNLPILCYVPLSRRKKGESPFVESPQGLKVGDIEVLKESFTTPLTKITKQEI---K 64

Query: 264 VDNAKMALPERRTKDEFDPKAYKLLSNAGYDFTTHTTFKSLKIFDERPELSSTQKKLLKK 323
           +D  K +L ++RTKD FDPKAYKL++  GYDFTTH  FKSLKI  ++P+LSSTQKKLL++
Sbjct: 65  IDLTKASLRQKRTKDGFDPKAYKLMAKTGYDFTTHIEFKSLKI-HKQPKLSSTQKKLLQE 124

Query: 324 CYMTPTSRK 333
            +  P SRK
Sbjct: 125 GHAIPMSRK 129

The following BLAST results are available for this feature:

BLAST of Tan0021052 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0021052 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062018.1	2.8e-41	61.15	uncharacterized protein E6C27_scaffold89G003490 [Cucumis melo var. makuwa]	[more]
KAA0051585.1	3.4e-39	59.87	uncharacterized protein E6C27_scaffold174G001280 [Cucumis melo var. makuwa]	[more]
TYK05005.1	2.9e-38	59.87	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK05005.1	1.2e-04	45.24	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0060429.1	1.2e-36	65.89	gypsy-like retrotransposase [Cucumis melo var. makuwa] >TYK18518.1 gypsy-like re...	[more]

BLAST of Tan0021052 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V356	1.4e-41	61.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UD46	1.7e-39	59.87	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C0W6	1.4e-38	59.87	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3C0W6	6.0e-05	45.24	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V3U8	5.9e-37	65.89	Gypsy-like retrotransposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Tan0021052 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0021052.1	Tan0021052.1	mRNA