Tan0020949 (gene) Snake gourd v1

Overview


Name	Tan0020949
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG02: 41130717 .. 41131688 (+)
RNA-Seq Expression	Tan0020949
Synteny	Tan0020949

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAGCTCTATAATTTCCTTATTGGGTGCAGAAAAGTTAACCGGAGAGAACATGATGACATGGAAAAACAAACTCACCACTATATTGGTAGTGGATGATCTGAAGTTTGTGCTAACTGAGGAGCGTCCTCAGGTGCCAGGCTCGAATGCGTCACGAAATGTTCGTGATGCATATGATCGATGGATCAAGGCCAATGATAAGGCCAAGGTCTACATGTTTGCAAGTATGTCTGACATATTAGCCAAGAAGCATGAGGGCATGATTACTGCCAAGGAAATCATGGATTATGTGCAGGGTATGTTTGGACAACAGTCCACACAGGCCCGACACAATGCCGTAAAGTACATATCCAACTCAAGGATGCCAGAGGGTACATCTGTTCTGGATCATGTCCTGGATATGATGGTGCACTTCAACATCGTAGAGTCGAATGATGCTTCCATTGATCAATCGAGCTAGGTCAGCTTCATTCTGGAAACCCTTCCAGATAGTTTCCTGCAGTTTAGAGGTAATGTTGTTATGAACAAGCTTACTTTTAACCTTACCTCTCTTCTGAATGAACTCCAGAACTTTCAATCCTTGATAAGAATTCAAGGATCGAAAGGTGAGGCAAATGTTGCCAGTAGGAGTTATCACAGAGGTTCGACCTCTGGAACAAAAACAGTGGCTTCATCTTCTTCTAACCTGAAATGGAAGAAGAAGAACATGAAGAAGGTTGGTAAAGGGAAACAGGCTGACAAAGTTGCCGCCCAAAAGGGCAAGAAAGTCAAAGAAATTACTGACAAAGGAAAGTGTTTCCAATACAACGAAGACGGGCATTGGAAACGGGACTGTCCGAAGTACATTGCAGAAAAGAAGAAGGAAGGAAAATATGATTTACTTTGCCTAGAAGCTTGTTTAGTGGATAATGATAAAACTGCTTCGATACTTTATTCAGGCGCCACTAATCATGTTTGCTCTTCTTTTTAG

mRNA sequence

ATGTCTAGCTCTATAATTTCCTTATTGGGTGCAGAAAAGTTAACCGGAGAGAACATGATGACATGGAAAAACAAACTCACCACTATATTGGTAGTGGATGATCTGAAGTTTGTGCTAACTGAGGAGCGTCCTCAGGTGCCAGGCTCGAATGCGTCACGAAATGTTCGTGATGCATATGATCGATGGATCAAGGCCAATGATAAGGCCAAGGTCTACATGTTTGCAAGTATGTCTGACATATTAGCCAAGAAGCATGAGGGCATGATTACTGCCAAGGAAATCATGGATTATGTGCAGGGTATGTTTGGACAACAGTCCACACAGGCCCGACACAATGCCGTAAAGTACATATCCAACTCAAGGATGCCAGAGGATAGTTTCCTGCAGTTTAGAGGTAATGTTGTTATGAACAAGCTTACTTTTAACCTTACCTCTCTTCTGAATGAACTCCAGAACTTTCAATCCTTGATAAGAATTCAAGGATCGAAAGGTGAGGCAAATGTTGCCAGTAGGAGTTATCACAGAGGTTCGACCTCTGGAACAAAAACAGTGGCTTCATCTTCTTCTAACCTGAAATGGAAGAAGAAGAACATGAAGAAGGTTGGTAAAGGGAAACAGGCTGACAAAGTTGCCGCCCAAAAGGGCAAGAAAGTCAAAGAAATTACTGACAAAGGAAAGTGTTTCCAATACAACGAAGACGGGCATTGGAAACGGGACTGTCCGAAGTACATTGCAGAAAAGAAGAAGGAAGGAAAATATGATTTACTTTGCCTAGAAGCTTGTTTAGTGGATAATGATAAAACTGCTTCGATACTTTATTCAGGCGCCACTAATCATGTTTGCTCTTCTTTTTAG

Coding sequence (CDS)

ATGTCTAGCTCTATAATTTCCTTATTGGGTGCAGAAAAGTTAACCGGAGAGAACATGATGACATGGAAAAACAAACTCACCACTATATTGGTAGTGGATGATCTGAAGTTTGTGCTAACTGAGGAGCGTCCTCAGGTGCCAGGCTCGAATGCGTCACGAAATGTTCGTGATGCATATGATCGATGGATCAAGGCCAATGATAAGGCCAAGGTCTACATGTTTGCAAGTATGTCTGACATATTAGCCAAGAAGCATGAGGGCATGATTACTGCCAAGGAAATCATGGATTATGTGCAGGGTATGTTTGGACAACAGTCCACACAGGCCCGACACAATGCCGTAAAGTACATATCCAACTCAAGGATGCCAGAGGATAGTTTCCTGCAGTTTAGAGGTAATGTTGTTATGAACAAGCTTACTTTTAACCTTACCTCTCTTCTGAATGAACTCCAGAACTTTCAATCCTTGATAAGAATTCAAGGATCGAAAGGTGAGGCAAATGTTGCCAGTAGGAGTTATCACAGAGGTTCGACCTCTGGAACAAAAACAGTGGCTTCATCTTCTTCTAACCTGAAATGGAAGAAGAAGAACATGAAGAAGGTTGGTAAAGGGAAACAGGCTGACAAAGTTGCCGCCCAAAAGGGCAAGAAAGTCAAAGAAATTACTGACAAAGGAAAGTGTTTCCAATACAACGAAGACGGGCATTGGAAACGGGACTGTCCGAAGTACATTGCAGAAAAGAAGAAGGAAGGAAAATATGATTTACTTTGCCTAGAAGCTTGTTTAGTGGATAATGATAAAACTGCTTCGATACTTTATTCAGGCGCCACTAATCATGTTTGCTCTTCTTTTTAG

Protein sequence

MSSSIISLLGAEKLTGENMMTWKNKLTTILVVDDLKFVLTEERPQVPGSNASRNVRDAYDRWIKANDKAKVYMFASMSDILAKKHEGMITAKEIMDYVQGMFGQQSTQARHNAVKYISNSRMPEDSFLQFRGNVVMNKLTFNLTSLLNELQNFQSLIRIQGSKGEANVASRSYHRGSTSGTKTVASSSSNLKWKKKNMKKVGKGKQADKVAAQKGKKVKEITDKGKCFQYNEDGHWKRDCPKYIAEKKKEGKYDLLCLEACLVDNDKTASILYSGATNHVCSSF

Homology

[Close]

BLAST of Tan0020949 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 323.2 bits (827), Expect = 2.3e-84
Identity = 175/327 (53.52%), Postives = 228/327 (69.72%), Query Frame = 0


Query: 1   MSSSIISLLGAEKLTGENMMTWKNKLTTILVVDDLKFVLTEERPQVPGSNASRNVRDAYD 60
           M+S+ +++L A+KL G N  +WKN + T+L++DDL+FVL EE PQVP +NA+R VR+ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYMFASMSDILAKKHEGMITAKEIMDYVQGMFGQQSTQARHNAVKYISNS 120
           RW KAN+KA+ Y+ AS+S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+A+KYI N+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMPE---------------------------------------DSFLQFRGNVVMNKLTF 180
           RM E                                       +SFLQFR N VMNK+ +
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 NLTSLLNELQNFQSLIRIQGSKGEANVA--SRSYHRGSTSGTKTVASSSSNLKWKKKNMK 240
            LT+LLNELQ F+SL++I+G KGEANVA  +R +HRGSTSGTK++ SSS N KWKK   K
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKK---K 240

Query: 241 KVGKGKQADKVAAQKGKKVKEITDKGKCFQYNEDGHWKRDCPKYIAEKK--KEGKYDLLC 285
           K G+G +A+  AA+  KK K    KG CF  N++GHWKR+CPKY+AEKK  K+GKYDLL 
Sbjct: 241 KGGQGNKANLAAAKTTKKAK--AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLV 300

[Close]

BLAST of Tan0020949 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 323.2 bits (827), Expect = 2.3e-84
Identity = 175/327 (53.52%), Postives = 228/327 (69.72%), Query Frame = 0


Query: 1   MSSSIISLLGAEKLTGENMMTWKNKLTTILVVDDLKFVLTEERPQVPGSNASRNVRDAYD 60
           M+S+ +++L A+KL G N  +WKN + T+L++DDL+FVL EE PQVP +NA+R VR+ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYMFASMSDILAKKHEGMITAKEIMDYVQGMFGQQSTQARHNAVKYISNS 120
           RW KAN+KA+ Y+ AS+S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+A+KYI N+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMPE---------------------------------------DSFLQFRGNVVMNKLTF 180
           RM E                                       +SFLQFR N VMNK+ +
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 NLTSLLNELQNFQSLIRIQGSKGEANVA--SRSYHRGSTSGTKTVASSSSNLKWKKKNMK 240
            LT+LLNELQ F+SL++I+G KGEANVA  +R +HRGSTSGTK++ SSS N KWKK   K
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKK---K 240

Query: 241 KVGKGKQADKVAAQKGKKVKEITDKGKCFQYNEDGHWKRDCPKYIAEKK--KEGKYDLLC 285
           K G+G +A+  AA+  KK K    KG CF  N++GHWKR+CPKY+AEKK  K+GKYDLL 
Sbjct: 241 KGGQGNKANLAAAKTTKKTK--AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLV 300

[Close]

BLAST of Tan0020949 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 323.2 bits (827), Expect = 2.3e-84
Identity = 175/327 (53.52%), Postives = 228/327 (69.72%), Query Frame = 0


Query: 1   MSSSIISLLGAEKLTGENMMTWKNKLTTILVVDDLKFVLTEERPQVPGSNASRNVRDAYD 60
           M+S+ +++L A+KL G N  +WKN + T+L++DDL+FVL EE PQVP +NA+R VR+ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYMFASMSDILAKKHEGMITAKEIMDYVQGMFGQQSTQARHNAVKYISNS 120
           RW KAN+KA+ Y+ AS+S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+A+KYI N+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMPE---------------------------------------DSFLQFRGNVVMNKLTF 180
           RM E                                       +SFLQFR N VMNK+ +
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 NLTSLLNELQNFQSLIRIQGSKGEANVA--SRSYHRGSTSGTKTVASSSSNLKWKKKNMK 240
            LT+LLNELQ F+SL++I+G KGEANVA  +R +HRGSTSGTK++ SSS N KWKK   K
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKK---K 240

Query: 241 KVGKGKQADKVAAQKGKKVKEITDKGKCFQYNEDGHWKRDCPKYIAEKK--KEGKYDLLC 285
           K G+G +A+  AA+  KK K    KG CF  N++GHWKR+CPKY+AEKK  K+GKYDLL 
Sbjct: 241 KGGQGNKANLAAAKTTKKAK--AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLV 300

[Close]

BLAST of Tan0020949 vs. NCBI nr
Match: KAA0035879.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051221.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051893.1 gag/pol protein [Cucumis melo var. makuwa] >TYK00551.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 323.2 bits (827), Expect = 2.3e-84
Identity = 175/327 (53.52%), Postives = 228/327 (69.72%), Query Frame = 0


Query: 1   MSSSIISLLGAEKLTGENMMTWKNKLTTILVVDDLKFVLTEERPQVPGSNASRNVRDAYD 60
           M+S+ +++L A+KL G N  +WKN + T+L++DDL+FVL EE PQVP +NA+R VR+ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYMFASMSDILAKKHEGMITAKEIMDYVQGMFGQQSTQARHNAVKYISNS 120
           RW KAN+KA+ Y+ AS+S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+A+KYI N+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMPE---------------------------------------DSFLQFRGNVVMNKLTF 180
           RM E                                       +SFLQFR N VMNK+ +
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 NLTSLLNELQNFQSLIRIQGSKGEANVA--SRSYHRGSTSGTKTVASSSSNLKWKKKNMK 240
            LT+LLNELQ F+SL++I+G KGEANVA  +R +HRGSTSGTK++ SSS N KWKK   K
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKK---K 240

Query: 241 KVGKGKQADKVAAQKGKKVKEITDKGKCFQYNEDGHWKRDCPKYIAEKK--KEGKYDLLC 285
           K G+G +A+  AA+  KK K    KG CF  N++GHWKR+CPKY+AEKK  K+GKYDLL 
Sbjct: 241 KGGQGNKANLAAAKTTKKTK--AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLV 300

[Close]

BLAST of Tan0020949 vs. NCBI nr
Match: KAA0047792.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 323.2 bits (827), Expect = 2.3e-84
Identity = 175/327 (53.52%), Postives = 228/327 (69.72%), Query Frame = 0


Query: 1   MSSSIISLLGAEKLTGENMMTWKNKLTTILVVDDLKFVLTEERPQVPGSNASRNVRDAYD 60
           M+S+ +++L A+KL G N  +WKN + T+L++DDL+FVL EE PQVP +NA+R VR+ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYMFASMSDILAKKHEGMITAKEIMDYVQGMFGQQSTQARHNAVKYISNS 120
           RW KAN+KA+ Y+ AS+S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+A+KYI N+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMPE---------------------------------------DSFLQFRGNVVMNKLTF 180
           RM E                                       +SFLQFR N VMNK+ +
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 NLTSLLNELQNFQSLIRIQGSKGEANVA--SRSYHRGSTSGTKTVASSSSNLKWKKKNMK 240
            LT+LLNELQ F+SL++I+G KGEANVA  +R +HRGSTSGTK++ SSS N KWKK   K
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKK---K 240

Query: 241 KVGKGKQADKVAAQKGKKVKEITDKGKCFQYNEDGHWKRDCPKYIAEKK--KEGKYDLLC 285
           K G+G +A+  AA+  KK K    KG CF  N++GHWKR+CPKY+AEKK  K+GKYDLL 
Sbjct: 241 KGGQGNKANLAAAKTTKKAK--AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLV 300

[Close]

BLAST of Tan0020949 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.1e-84
Identity = 175/327 (53.52%), Postives = 228/327 (69.72%), Query Frame = 0


Query: 1   MSSSIISLLGAEKLTGENMMTWKNKLTTILVVDDLKFVLTEERPQVPGSNASRNVRDAYD 60
           M+S+ +++L A+KL G N  +WKN + T+L++DDL+FVL EE PQVP +NA+R VR+ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYMFASMSDILAKKHEGMITAKEIMDYVQGMFGQQSTQARHNAVKYISNS 120
           RW KAN+KA+ Y+ AS+S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+A+KYI N+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMPE---------------------------------------DSFLQFRGNVVMNKLTF 180
           RM E                                       +SFLQFR N VMNK+ +
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 NLTSLLNELQNFQSLIRIQGSKGEANVA--SRSYHRGSTSGTKTVASSSSNLKWKKKNMK 240
            LT+LLNELQ F+SL++I+G KGEANVA  +R +HRGSTSGTK++ SSS N KWKK   K
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKK---K 240

Query: 241 KVGKGKQADKVAAQKGKKVKEITDKGKCFQYNEDGHWKRDCPKYIAEKK--KEGKYDLLC 285
           K G+G +A+  AA+  KK K    KG CF  N++GHWKR+CPKY+AEKK  K+GKYDLL 
Sbjct: 241 KGGQGNKANLAAAKTTKKAK--AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLV 300

[Close]

BLAST of Tan0020949 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.1e-84
Identity = 175/327 (53.52%), Postives = 228/327 (69.72%), Query Frame = 0


Query: 1   MSSSIISLLGAEKLTGENMMTWKNKLTTILVVDDLKFVLTEERPQVPGSNASRNVRDAYD 60
           M+S+ +++L A+KL G N  +WKN + T+L++DDL+FVL EE PQVP +NA+R VR+ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYMFASMSDILAKKHEGMITAKEIMDYVQGMFGQQSTQARHNAVKYISNS 120
           RW KAN+KA+ Y+ AS+S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+A+KYI N+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMPE---------------------------------------DSFLQFRGNVVMNKLTF 180
           RM E                                       +SFLQFR N VMNK+ +
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 NLTSLLNELQNFQSLIRIQGSKGEANVA--SRSYHRGSTSGTKTVASSSSNLKWKKKNMK 240
            LT+LLNELQ F+SL++I+G KGEANVA  +R +HRGSTSGTK++ SSS N KWKK   K
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKK---K 240

Query: 241 KVGKGKQADKVAAQKGKKVKEITDKGKCFQYNEDGHWKRDCPKYIAEKK--KEGKYDLLC 285
           K G+G +A+  AA+  KK K    KG CF  N++GHWKR+CPKY+AEKK  K+GKYDLL 
Sbjct: 241 KGGQGNKANLAAAKTTKKTK--AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLV 300

[Close]

BLAST of Tan0020949 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.1e-84
Identity = 175/327 (53.52%), Postives = 228/327 (69.72%), Query Frame = 0


Query: 1   MSSSIISLLGAEKLTGENMMTWKNKLTTILVVDDLKFVLTEERPQVPGSNASRNVRDAYD 60
           M+S+ +++L A+KL G N  +WKN + T+L++DDL+FVL EE PQVP +NA+R VR+ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYMFASMSDILAKKHEGMITAKEIMDYVQGMFGQQSTQARHNAVKYISNS 120
           RW KAN+KA+ Y+ AS+S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+A+KYI N+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMPE---------------------------------------DSFLQFRGNVVMNKLTF 180
           RM E                                       +SFLQFR N VMNK+ +
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 NLTSLLNELQNFQSLIRIQGSKGEANVA--SRSYHRGSTSGTKTVASSSSNLKWKKKNMK 240
            LT+LLNELQ F+SL++I+G KGEANVA  +R +HRGSTSGTK++ SSS N KWKK   K
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKK---K 240

Query: 241 KVGKGKQADKVAAQKGKKVKEITDKGKCFQYNEDGHWKRDCPKYIAEKK--KEGKYDLLC 285
           K G+G +A+  AA+  KK K    KG CF  N++GHWKR+CPKY+AEKK  K+GKYDLL 
Sbjct: 241 KGGQGNKANLAAAKTTKKAK--AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLV 300

[Close]

BLAST of Tan0020949 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.1e-84
Identity = 175/327 (53.52%), Postives = 228/327 (69.72%), Query Frame = 0


Query: 1   MSSSIISLLGAEKLTGENMMTWKNKLTTILVVDDLKFVLTEERPQVPGSNASRNVRDAYD 60
           M+S+ +++L A+KL G N  +WKN + T+L++DDL+FVL EE PQVP +NA+R VR+ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYMFASMSDILAKKHEGMITAKEIMDYVQGMFGQQSTQARHNAVKYISNS 120
           RW KAN+KA+ Y+ AS+S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+A+KYI N+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMPE---------------------------------------DSFLQFRGNVVMNKLTF 180
           RM E                                       +SFLQFR N VMNK+ +
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 NLTSLLNELQNFQSLIRIQGSKGEANVA--SRSYHRGSTSGTKTVASSSSNLKWKKKNMK 240
            LT+LLNELQ F+SL++I+G KGEANVA  +R +HRGSTSGTK++ SSS N KWKK   K
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKK---K 240

Query: 241 KVGKGKQADKVAAQKGKKVKEITDKGKCFQYNEDGHWKRDCPKYIAEKK--KEGKYDLLC 285
           K G+G +A+  AA+  KK K    KG CF  N++GHWKR+CPKY+AEKK  K+GKYDLL 
Sbjct: 241 KGGQGNKANLAAAKTTKKAK--AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLV 300

[Close]

BLAST of Tan0020949 vs. ExPASy TrEMBL
Match: A0A5D3CSZ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00320 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.1e-84
Identity = 175/327 (53.52%), Postives = 228/327 (69.72%), Query Frame = 0


Query: 1   MSSSIISLLGAEKLTGENMMTWKNKLTTILVVDDLKFVLTEERPQVPGSNASRNVRDAYD 60
           M+S+ +++L A+KL G N  +WKN + T+L++DDL+FVL EE PQVP +NA+R VR+ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANDKAKVYMFASMSDILAKKHEGMITAKEIMDYVQGMFGQQSTQARHNAVKYISNS 120
           RW KAN+KA+ Y+ AS+S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+A+KYI N+
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMPE---------------------------------------DSFLQFRGNVVMNKLTF 180
           RM E                                       +SFLQFR N VMNK+ +
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

Query: 181 NLTSLLNELQNFQSLIRIQGSKGEANVA--SRSYHRGSTSGTKTVASSSSNLKWKKKNMK 240
            LT+LLNELQ F+SL++I+G KGEANVA  +R +HRGSTSGTK++ SSS N KWKK   K
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKK---K 240

Query: 241 KVGKGKQADKVAAQKGKKVKEITDKGKCFQYNEDGHWKRDCPKYIAEKK--KEGKYDLLC 285
           K G+G +A+  AA+  KK K    KG CF  N++GHWKR+CPKY+AEKK  K+GKYDLL 
Sbjct: 241 KGGQGNKANLAAAKTTKKTK--AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLV 300

The following BLAST results are available for this feature:

BLAST of Tan0020949 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0020949 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044955.1	2.3e-84	53.52	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	2.3e-84	53.52	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	2.3e-84	53.52	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035879.1	2.3e-84	53.52	gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumi...	[more]
KAA0047792.1	2.3e-84	53.52	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0020949 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	1.1e-84	53.52	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	1.1e-84	53.52	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7TU93	1.1e-84	53.52	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	1.1e-84	53.52	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]
A0A5D3CSZ6	1.1e-84	53.52	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G0032...	[more]

BLAST of Tan0020949 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	4.10.60.10		coord: 200..254 e-value: 2.5E-7 score: 32.5
None	No IPR available	PANTHER	PTHR35317:SF16	ZINC FINGER, CCHC-TYPE-RELATED	coord: 125..246
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 125..246
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 7..117
None	No IPR available	PANTHER	PTHR35317:SF16	ZINC FINGER, CCHC-TYPE-RELATED	coord: 7..117
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 222..246

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0020949.1	Tan0020949.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding