Tan0020686 (gene) Snake gourd v1

Overview


Name	Tan0020686
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Reverse transcriptase
Location	LG07: 53116237 .. 53116437 (+)
RNA-Seq Expression	Tan0020686
Synteny	Tan0020686

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGTAACAGAATATGAGAAGAAGTTCACAGAATTATCAAAGTATGCTAGCACTATTGTTGCAAACGAGACAGATCGATGCAAGAGGTTCGAGGACGGTCTACGAACAGAGATCAGAACGCCTGTGACAGCAAGTTCGGAGTGGGCTGAGTTCTCCAAGCTTGTGGAGACGACATTACGAGTAGAGCGAAGCTGGTAG

mRNA sequence

ATGTCAGTAACAGAATATGAGAAGAAGTTCACAGAATTATCAAAGTATGCTAGCACTATTGTTGCAAACGAGACAGATCGATGCAAGAGGTTCGAGGACGGTCTACGAACAGAGATCAGAACGCCTGTGACAGCAAGTTCGGAGTGGGCTGAGTTCTCCAAGCTTGTGGAGACGACATTACGAGTAGAGCGAAGCTGGTAG

Coding sequence (CDS)

ATGTCAGTAACAGAATATGAGAAGAAGTTCACAGAATTATCAAAGTATGCTAGCACTATTGTTGCAAACGAGACAGATCGATGCAAGAGGTTCGAGGACGGTCTACGAACAGAGATCAGAACGCCTGTGACAGCAAGTTCGGAGTGGGCTGAGTTCTCCAAGCTTGTGGAGACGACATTACGAGTAGAGCGAAGCTGGTAG

Protein sequence

MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTLRVERSW

Homology

[Close]

BLAST of Tan0020686 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 44/65 (67.69%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1   MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTL 60
           M+V EYEKK+TELSKYA+ ++ +E +RCKRFE+GLR EIRTPVTA ++W +FSKLVE  L
Sbjct: 140 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 199

Query: 61  RVERS 66
           RVE+S
Sbjct: 200 RVEKS 204

[Close]

BLAST of Tan0020686 vs. NCBI nr
Match: KAA0035138.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1   MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTL 60
           +SV EYEKK+TELS+YA  IVA+E+DRC+RFE GLR EIRTPVTA ++W  FS+LVET L
Sbjct: 208 LSVAEYEKKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETAL 267

Query: 61  RVERS 66
           RVE+S
Sbjct: 268 RVEQS 272

[Close]

BLAST of Tan0020686 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 44/65 (67.69%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1   MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTL 60
           M+V EYEKK+TELSKYA+ ++ +E +RCKRFE+GLR EIRTPVTA ++W +FSKLVE  L
Sbjct: 174 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 233

Query: 61  RVERS 66
           RVE+S
Sbjct: 234 RVEKS 238

[Close]

BLAST of Tan0020686 vs. NCBI nr
Match: KAA0046777.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 4.0e-16
Identity = 45/65 (69.23%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1   MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTL 60
           +SV EYE+K+TELS+YA  IVA+E+DRC+RFE GLR EIRTPVTA ++W  FS+LVET L
Sbjct: 114 LSVAEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETAL 173

Query: 61  RVERS 66
           RVE+S
Sbjct: 174 RVEQS 178

[Close]

BLAST of Tan0020686 vs. NCBI nr
Match: KAA0051348.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 4.0e-16
Identity = 45/65 (69.23%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1   MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTL 60
           +SV EYE+K+TELS+YA  IVA+E+DRC+RFE GLR EIRTPVTA ++W  FS+LVET L
Sbjct: 170 LSVAEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETAL 229

Query: 61  RVERS 66
           RVE+S
Sbjct: 230 RVEQS 234

[Close]

BLAST of Tan0020686 vs. ExPASy TrEMBL
Match: A0A5A7SX06 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002230 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.8e-17
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1   MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTL 60
           +SV EYEKK+TELS+YA  IVA+E+DRC+RFE GLR EIRTPVTA ++W  FS+LVET L
Sbjct: 208 LSVAEYEKKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETAL 267

Query: 61  RVERS 66
           RVE+S
Sbjct: 268 RVEQS 272

[Close]

BLAST of Tan0020686 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.8e-17
Identity = 44/65 (67.69%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1   MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTL 60
           M+V EYEKK+TELSKYA+ ++ +E +RCKRFE+GLR EIRTPVTA ++W +FSKLVE  L
Sbjct: 174 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 233

Query: 61  RVERS 66
           RVE+S
Sbjct: 234 RVEKS 238

[Close]

BLAST of Tan0020686 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.8e-17
Identity = 44/65 (67.69%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1   MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTL 60
           M+V EYEKK+TELSKYA+ ++ +E +RCKRFE+GLR EIRTPVTA ++W +FSKLVE  L
Sbjct: 140 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 199

Query: 61  RVERS 66
           RVE+S
Sbjct: 200 RVEKS 204

[Close]

BLAST of Tan0020686 vs. ExPASy TrEMBL
Match: A0A5A7U7T7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00710 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-16
Identity = 45/65 (69.23%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1   MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTL 60
           +SV EYE+K+TELS+YA  IVA+E+DRC+RFE GLR EIRTPVTA ++W  FS+LVET L
Sbjct: 170 LSVAEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETAL 229

Query: 61  RVERS 66
           RVE+S
Sbjct: 230 RVEQS 234

[Close]

BLAST of Tan0020686 vs. ExPASy TrEMBL
Match: A0A5A7TY03 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00630 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-16
Identity = 45/65 (69.23%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1   MSVTEYEKKFTELSKYASTIVANETDRCKRFEDGLRTEIRTPVTASSEWAEFSKLVETTL 60
           +SV EYE+K+TELS+YA  IVA+E+DRC+RFE GLR EIRTPVTA ++W  FS+LVET L
Sbjct: 114 LSVAEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETAL 173

Query: 61  RVERS 66
           RVE+S
Sbjct: 174 RVEQS 178

The following BLAST results are available for this feature:

BLAST of Tan0020686 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0020686 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036813.1	1.8e-16	67.69	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0035138.1	1.8e-16	70.77	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYJ95881.1	1.8e-16	67.69	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]
KAA0046777.1	4.0e-16	69.23	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0051348.1	4.0e-16	69.23	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Tan0020686 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SX06	8.8e-17	70.77	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BB91	8.8e-17	67.69	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1M0	8.8e-17	67.69	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5A7U7T7	2.0e-16	69.23	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7TY03	2.0e-16	69.23	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Tan0020686 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0020686.1	Tan0020686.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding