Tan0020556 (gene) Snake gourd v1

Overview
NameTan0020556
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG11: 8234822 .. 8236369 (+)
RNA-Seq ExpressionTan0020556
SyntenyTan0020556
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATATTTTCTTGGAAATCTCAATATATATATTCAAAGGAAAGAAAACAGAGTTTGAGAGAAATTAAAAAAAAAAAAGAAAAAAAAATTGGGATTTTCATTTTCAGTGAAGAAGAGAAGATTGAAGAAGGAAGAAAAAATGGAAATGTATGCAACTTTCTCCTCCTTTCTCTCTGCCTAATTTTGCTCTTCTTCTGCCATTTCATCTCTCCCTCAAGAACTTCAATTTTTCTCTACTCCATTTTTTGTTTCTGTTTCTCTCTCTACCCTTTTCCTCTTTCACCCACTCTCTCTCTCTCTCTTTCTTACTGTGTATTTTTTTTTTCTGTGGGGTTTTCTTTTGGATCTCTGGGATTATCCCAGATGTGTTGCACTCTCTATGCCAGAATCTTCTTCATCCTCTTTCACAAATTGCGGTCAGCATTTCTCGAGGGTTTATGAATTTTGTTGTTGAATTTGTTGTTTTTTGTTTGGTTTCAGTTGATGGATCTTTGAGAGGGCTAGGGTTTAGATTTGGCCAGTGATGATTGCGGATATGATTGTCTGTTTTTGCCCCTTTTTGATCATTTCTCTTTCTGATGATTTTGGTGAAATGGAGTTTATGTTCTCTGCTCACTGATTTCGCAAGCTGATTTTGATTTTGATTTTTTTTTTTTACTTTTTTTTATTTATTTTTCCTCTTTTGGATTGTGTCTCTGTTTCAGATCTTCCATTGTCGCTATTTTCTCTGCTGGTAGCTCAATTCGGCACCTCGAGTGAGCTATTGATTTCTCGTTCGATCGTTTTTGTGTGCTTTTCAATAAGTCGGCGATTTAAAGCCTGTTTCTTTGGGAATCCGTTCTGTCGTGGGAGTTCGATTCAGGTATATCGATTCTCTTTTTCGTTCTTTGATGGAAATGGATTGTTATGGATTAGGTCGCGATATTTGGAAATTTTAAATTGTTCTGATTTTGATGTTCTAGGAAGGATCTGTATTTAGCAGGCTACGGTTTACTTTTTCAGCGTTGATTATGCTGAATTTGTTGCAATAATTGCGGACTTCTTTCGTAATTAATGAGTCAATTACTTGGAGTTCTGTTCTCTGAGTTATCGAACTTTAAGAATTTATGATAAGTGATTCTTCTAGGTTAGGATAATAGATTAACTTCGCGATTAATTGCTTTGTTCATTTATTTTATTCCAGATGGAGTAAGAGAATTTAATTGGATTTGGAAATTCCTTCTCTCCGCTTCTTCTTTTTATGGATCAGGAAGATCTGTACTTTTCGAACATTTATGAGGAGTTAATTATTTATTCCAGTACTGATTTGTAAAAATGTTATAATTAAACATTAAGTTCCCCCTCCATTTCTTTCAATCTTCATTTAATTTTCTTGTTGATGTGTGCACTATCTCTGCTCCTTTCTATTTTTCTACTCAGATTTGATCAAAACACTGATGAATTTTCTTCTGTTTGTTTAAGTCTGGACTCTCTCTCTCCTAACTTTTCCTCCTTTCATCAATATTCCTAATTTGTTTGTAGGATCTTTATTTGATTTCAAATTAA

mRNA sequence

ATGGCAATATTTTCTTGGAAATCTCAATATATATATTCAAAGGAAAGAAAACAGAGTTTGAGAGAAATTAAAAAAAAAAAAGAAAAAAAAATTGGGATTTTCATTTTCAGTGAAGAAGAGAAGATTGAAGAAGGAAGAAAAAATGGAAATGTATGCAACTTTCTCCTCCTTTCTCTCTGCCTAATTTTGCTCTTCTTCTGCCATTTCATCTCTCCCTCAAGAACTTCAATTTTTCTCTACTCCATTTTTTGTTTCTGTTTCTCTCTCTACCCTTTTCCTCTTTCACCCACTCTCTCTCTCTCTCTTTCTTACTGTGTATTTTTTTTTTCTGTGGGGTTTTCTTTTGGATCTCTGGGATTATCCCAGATGTGTTGCACTCTCTATGCCAGAATCTTCTTCATCCTCTTTCACAAATTGCGGTCAGCATTTCTCGAGGATCTTCCATTGTCGCTATTTTCTCTGCTGGTAGCTCAATTCGGCACCTCGAGTGAGCTATTGATTTCTCGTTCGATCGTTTTTGTGTGCTTTTCAATAAGTCGGCGATTTAAAGCCTGTTTCTTTGGGAATCCGTTCTGTCGTGGGAGTTCGATTCAGGATCTTTATTTGATTTCAAATTAA

Coding sequence (CDS)

ATGGCAATATTTTCTTGGAAATCTCAATATATATATTCAAAGGAAAGAAAACAGAGTTTGAGAGAAATTAAAAAAAAAAAAGAAAAAAAAATTGGGATTTTCATTTTCAGTGAAGAAGAGAAGATTGAAGAAGGAAGAAAAAATGGAAATGTATGCAACTTTCTCCTCCTTTCTCTCTGCCTAATTTTGCTCTTCTTCTGCCATTTCATCTCTCCCTCAAGAACTTCAATTTTTCTCTACTCCATTTTTTGTTTCTGTTTCTCTCTCTACCCTTTTCCTCTTTCACCCACTCTCTCTCTCTCTCTTTCTTACTGTGTATTTTTTTTTTCTGTGGGGTTTTCTTTTGGATCTCTGGGATTATCCCAGATGTGTTGCACTCTCTATGCCAGAATCTTCTTCATCCTCTTTCACAAATTGCGGTCAGCATTTCTCGAGGATCTTCCATTGTCGCTATTTTCTCTGCTGGTAGCTCAATTCGGCACCTCGAGTGAGCTATTGATTTCTCGTTCGATCGTTTTTGTGTGCTTTTCAATAAGTCGGCGATTTAAAGCCTGTTTCTTTGGGAATCCGTTCTGTCGTGGGAGTTCGATTCAGGATCTTTATTTGATTTCAAATTAA

Protein sequence

MAIFSWKSQYIYSKERKQSLREIKKKKEKKIGIFIFSEEEKIEEGRKNGNVCNFLLLSLCLILLFFCHFISPSRTSIFLYSIFCFCFSLYPFPLSPTLSLSLSYCVFFFSVGFSFGSLGLSQMCCTLYARIFFILFHKLRSAFLEDLPLSLFSLLVAQFGTSSELLISRSIVFVCFSISRRFKACFFGNPFCRGSSIQDLYLISN
Homology
[Close]
BLAST of Tan0020556 vs. NCBI nr
Match: KAG6602236.1 (hypothetical protein SDJN03_07469, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-19
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 0 

Query: 146 DLPLSLFSLLVAQFGTSSELLISRSIVFVCFSISRRFKACFFGNPFCRGSSIQDLYLISN 205
           DLPLS+FSLLVAQFGTSSELLISRSI+FVCFS+SRRFKACFF N FC GSSIQDLYLI+N
Sbjct: 30  DLPLSIFSLLVAQFGTSSELLISRSIIFVCFSLSRRFKACFFENLFCCGSSIQDLYLIAN 89

[Close]
BLAST of Tan0020556 vs. ExPASy TrEMBL
Match: A0A0A0KCH0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046450 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 3.6e-45
Identity = 124/187 (66.31%), Postives = 136/187 (72.73%), Query Frame = 0 

Query: 25  KKKEKKIGI----FIFSEEEK--IEEGRKNGNVCNFLLLSLCLILLFFCHFISPSRTSIF 84
           +K+  KI I    FI  E +K  +++  ++GNV N  LLSLCLILLFFCHFI  SRT  F
Sbjct: 2   EKRIYKISIHFSFFILCEVKKRRLKKEDEDGNVFNSPLLSLCLILLFFCHFIFLSRTPFF 61

Query: 85  LYSIFCFCFSLYPFPLSPTLSLSLSYCVFFFSVGFSFGSLGLSQMCCTLYARIFFILFHK 144
           LYSIF F F L   PLSP LSLSL++   FF V       GLSQMCCTLYARIFFILFHK
Sbjct: 62  LYSIFFFLF-LSLHPLSPFLSLSLNFFFLFFWVEIPG---GLSQMCCTLYARIFFILFHK 121

Query: 145 LRSAFLEDLPLSLFSLLVAQFGTSSELLISRSIVFVCFSISRRFKACFFGNPFCRGSSIQ 204
           LRSAFLEDLPL LFSLLVAQFGTSSE LISR IV V F +SRRFK  FFGN FCRG   Q
Sbjct: 122 LRSAFLEDLPLLLFSLLVAQFGTSSEPLISRFIVSVWFLLSRRFKVYFFGNLFCRGGHFQ 181

Query: 205 DLYLISN 206
           DLYLI+N
Sbjct: 182 DLYLIAN 184

The following BLAST results are available for this feature:
BLAST of Tan0020556 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0020556 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6602236.13.2e-1988.33hypothetical protein SDJN03_07469, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Tan0020556 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCH03.6e-4566.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046450 PE=4 SV=1[more]
BLAST of Tan0020556 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0020556.1Tan0020556.1mRNA