Tan0020509 (gene) Snake gourd v1

Overview


Name	Tan0020509
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	ycf49-like protein
Location	LG01: 21820227 .. 21824205 (+)
RNA-Seq Expression	Tan0020509
Synteny	Tan0020509

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATACCTTCTTTGCTCTCTTATTCTATTTTTTAATCTCTCAAACTCAAACTACCCCTTCAATCAAGGTATATAGGTTATAGCAAGAATAAAAGAGAATAATGGAGTCACCAAAAGATCTTTGGACTTCTTTAACAAGACTTTACTAATTTGAGAAAAAGATATGCTTAGAATTTGAGCCATAATTTTAAGGGTCTCTAAGAAGAAAAATGAAGAAAACAGATGTATTACCAAATTTGTAGATTTTATTAATCTTTTTTCCAGTTCGAGTGAGTGGTTAGTTAAAAAATTTTATTGAAAATTGGACAAATGAAAAGAAAATAAGAGTATCTATATGAAGAAAAAAATATGAGTTTTTAAATGGATTCTTTTCTATTCCACAAATCAAAATCACCTTCGATTTTTTCGATTTAGTTTTGGAGAGGGGATCAATTCAAGGCCAGTGACATTTTAGCATTTCCGGCCATTATCCGTCCGATTAGCTTATCTTTTGAAAACCAGAGGAAATTAATTAGCATGCTTTTTTAGTTCGTTATTCGTAGGAAATCGAAACTGGAATAGAGATTGGACCCAAATTTCGACCACTAATTCAGTTCAAATGTTATCGCCATTACTGTAGCTCCACTTTCTCTACTGAATGCAAACCAGAAGCGAATCACAGAATCAAAGAGATGACTCGCTGTTTTTAGAGCAAATCTTTCATTGATTACTGAATTTGCCAGTCTCCTCTGTTTTCATTGCGCATCATTTCACATTTCACATTTGGGGAGCCAAATTTCGCCTTCTACAAAACCCCCAAATCATGTCACTCACTTCCACCTTGTTATATTCCTTTTCAAATCCCAAATGGCCCATTTCTTCTTCTTCTTCCTCGCTGCCGAGGTCCGGAGATTTTGCCGCTCCTTCTCAAGCTCTGACCGGAATTCGATTCCCGAGGATTATCGGCGCCGGTTTGGCTTTGGACTCGAAAACCATGATGGTTTTGCTCGGCACGGGCTTGACTCTGGCCCTTCTGGGACCTGAATCGGCTTCCGCTGCGACGGAATTGCAGTCGTTGGGTGCTTCTTCGCTGCAGTTTAATGAGCCCCTAAATGCTCTGTCCTTACCCACCTGGGCCATACATGTTTCCAGTGTTGTTGAATGGTGAGGTTTTATGAATCTCGTTCTGTTTTGTAATGATTTCATGAACTGTATTTTGTTTAAACTCTGGATTTTTAGTTACCCATTTGATAAATTAGAAATTAAAGAAAAAGGAAGAATAGTAAACCAAGCAATTCATATGCTGCTGGTCTACCTTGGTTTATAATTTGTTGATCACAAGTCTTGTGTTGTAAGGATTACAGCAATGGCTTTGGTATGGCAATATGGAGAGAAATCTGGCAATGAGTCTTGGAAAGGACTTTCTTGGGGAATGGTAAGTTTTTTTCTCTGTCTATATTTGCTTTCCCATCTATCTTATAGCTAGGAGTTTCTTTTTCTTTGAGTTATATAATAACTCAGGTAAAAATTTAGATTGAATCTCCATATAGAGGGGAAAAAGAGAGAGAGATGAAGAAGAAGAAGAAGAAAAGGAAATTAATGCTTAGGCTATCCTAAACTGATATTACCTAACCTATTAAAGTAAATCATCACAACCAAGCAGAGCACAAATGTAGAATTGGATTCAATCTACTCTTAATGTCCTGGGATCATTCAACTAGAGAAGTATTAACTTATGTTTGTTGGCTGTTTTCAACAAAGTCATAATTTGCCTGCGTAGGTCTTCAAAGCTTTTAGATTTCCTTTGAACGGCTCAACTCAACCACTCTGGACAGATAACTAACAGTGATTGTTTCCTTCTGAATTCTTTCTTAACTTGAGCAGGTACCTTTGCTAGGTGGGGCATTTTGTGCTTGCACGTGGCATTTTTTCTACAACTCCGAGTCTCTCGAGGTACACTAAGTTTCGGTTTTTGCAAGATCTTGCTGGTCATAATGAAATAGCTGATAGAGTACATATGTTCTAAATAATGCATACAAAGTTTTAAACTTCTAGTCTAGTTCTTGATCATGATGATTTGTTCTAAGTTCTGAAATGATAAAAAAAAATAACACCTAGTTGAGATAATTTTCTGTCATTCATATATTAGCTTCTTTCAATTAGGGAACTCTCAAAATATACACCTAGTTGAGAGCTCCCTAATCTCTCCCAATATCAGAATACCCCCCTCACGCCATGCCAGTTTTTTCACTATTCATAAGTACTCACTCAAACCCTCATAAGGCTTGGGGTCCCCCAACTTAGAATAAACTTCTCTTCCTACCAAACTCTCCCCCAGCCTTGTATACTCTCCCCCTCTACCTCTCTTCCTAGACATTCTTAATTGGGGGTCTATCACTTAAGTCCGTCATTTTGGGTTTTCAATTCTAACTTTGAACTCTTAGATCATATGGAGAAATAACTCCTTACTACCTGTTGTCTTATCAGTCAGGACTCTGACTTCCCTCTTTTATCTTGAAATTTTTTTAATGAGCATTTGTTCCTTCATTCCAGTTCCAGTTTCACTTTCAGTCAAGTATTTGAGTTGGCATGGAAGTCCTTAAATTATGAATTTCTCATGGTGCACTTGGTTAAAAGAAACTTTTCTTTATATCTCTTAACAACAACTACGAAGGTAGTTGTGTGTGGTGCCATGACATAGATAATGCTGCAAATTTGGGTCCCTGAGTTTTGTGCGAACTCCTACAATAGTGAAAAGAAAATGAAAAATACAGGACAGGAAGCTAGATGAAATTTATAGCTATTTTGGGAGTGCTCCCATTTTTTTATCTTCATTTCTTGAATTGCAGCATCAGATACATTCTTGCTTAGTATCCAAATTTGTTAATATCTGCTAGATGTCAATAGTACTGTTATGCATCAAATTTTACATGTTTTTCATCATATTGTGCTCAATGATGGTGGAAAAGAGCGCAAAATAGTTACAAATGTTTAATTTCTATTAGAATAAAAGATGACTTGATGAATTGGATTTCTTGTTTTAATTTTTCTTAAACGCCAATTATTCAACTAGATTCATGGTTATTGTTTCTGAAAAAATCAATAGAAGTGAAAAAAACCACCGACTGATTTCTTTTCCTCCACTTCGTTTCACTCTTCCATAAGCTTCTTTCAAATTTCTTCGAATACATACCCATTTGTTGTGCAATCACATAAGTGCATTCTATATGTGACATATGGCTGTGAACAGCTTGAGATCCAAACTTGACCAGGCGATAAGGAAGAAGAAGGGGAAAAATGAAGAAAAACTGATACAAACTGATCTCTCTCCGGGTTTTGATTAATAGTATTCAGATTCTATTGGTGCAGTTTCAGAAAAAACAAGAGCAACCTACTGTGAAAAGTATATAAAGTGACCCACCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCCCTCTCTCCCTGGAAGAAACTGATTTCTCTCTCTGGGTTTAGGATCATAGGATTCAGATTCTATTGGTGTACCTTGAGGAATCCTGCATCATTGATTGTGTTGTGAATAACTGGTTTTTCTCAATCTTTTCGACAAGTTTCAAAAGAACAAGGCAGCCTTACCATGAAAAGAACATAGAATAACCTACCCCTCTCTCCCTTTCTTTCTCACTCTTAAATTTGACAAGTTTTTTTTGTGGAAATTGACATTGCTTGAGGTTTGTTGGTTAGTAAAGTAAGTTCTGTTAGTGCAGTTTCAAAAGGAAAAGACCATAAAAAGGATACAAAATATGACTTGGATTTGGTGCTTGAGTGCAGGTTTTGGTGGCTCTTCAGGCAATACTGACGGCTATAGGAAATGCCACAATGTGCATTGCTGCATTTCGCATCTACAAATCATCACAAGAACGTTCAAGTAACTTGTAAAACAAAAATAAAAAATAAAAACTCAAACCTCTGTTATACTAACTTAATAATAATTATATTATCATCATTTTTCATCCTCCA

mRNA sequence

AATACCTTCTTTGCTCTCTTATTCTATTTTTTAATCTCTCAAACTCAAACTACCCCTTCAATCAAGGTATATAGGTTATAGCAAGAATAAAAGAGAATAATGGAGTCACCAAAAGATCTTTGGACTTCTTTAACAAGACTTTACTAATTTGAGAAAAAGATATGCTTAGAATTTGAGCCATAATTTTAAGGGTCTCTAAGAAGAAAAATGAAGAAAACAGATGTATTACCAAATTTGTAGATTTTATTAATCTTTTTTCCAGTTCGAGTGAGTGGTTAGTTAAAAAATTTTATTGAAAATTGGACAAATGAAAAGAAAATAAGAGTATCTATATGAAGAAAAAAATATGAGTTTTTAAATGGATTCTTTTCTATTCCACAAATCAAAATCACCTTCGATTTTTTCGATTTAGTTTTGGAGAGGGGATCAATTCAAGGCCAGTGACATTTTAGCATTTCCGGCCATTATCCGTCCGATTAGCTTATCTTTTGAAAACCAGAGGAAATTAATTAGCATGCTTTTTTAGTTCGTTATTCGTAGGAAATCGAAACTGGAATAGAGATTGGACCCAAATTTCGACCACTAATTCAGTTCAAATGTTATCGCCATTACTGTAGCTCCACTTTCTCTACTGAATGCAAACCAGAAGCGAATCACAGAATCAAAGAGATGACTCGCTGTTTTTAGAGCAAATCTTTCATTGATTACTGAATTTGCCAGTCTCCTCTGTTTTCATTGCGCATCATTTCACATTTCACATTTGGGGAGCCAAATTTCGCCTTCTACAAAACCCCCAAATCATGTCACTCACTTCCACCTTGTTATATTCCTTTTCAAATCCCAAATGGCCCATTTCTTCTTCTTCTTCCTCGCTGCCGAGGTCCGGAGATTTTGCCGCTCCTTCTCAAGCTCTGACCGGAATTCGATTCCCGAGGATTATCGGCGCCGGTTTGGCTTTGGACTCGAAAACCATGATGGTTTTGCTCGGCACGGGCTTGACTCTGGCCCTTCTGGGACCTGAATCGGCTTCCGCTGCGACGGAATTGCAGTCGTTGGGTGCTTCTTCGCTGCAGTTTAATGAGCCCCTAAATGCTCTGTCCTTACCCACCTGGGCCATACATGTTTCCAGTGTTGTTGAATGGATTACAGCAATGGCTTTGGTATGGCAATATGGAGAGAAATCTGGCAATGAGTCTTGGAAAGGACTTTCTTGGGGAATGGTACCTTTGCTAGGTGGGGCATTTTGTGCTTGCACGTGGCATTTTTTCTACAACTCCGAGTCTCTCGAGGTTTTGGTGGCTCTTCAGGCAATACTGACGGCTATAGGAAATGCCACAATGTGCATTGCTGCATTTCGCATCTACAAATCATCACAAGAACGTTCAAGTAACTTGTAAAACAAAAATAAAAAATAAAAACTCAAACCTCTGTTATACTAACTTAATAATAATTATATTATCATCATTTTTCATCCTCCA

Coding sequence (CDS)

ATGTCACTCACTTCCACCTTGTTATATTCCTTTTCAAATCCCAAATGGCCCATTTCTTCTTCTTCTTCCTCGCTGCCGAGGTCCGGAGATTTTGCCGCTCCTTCTCAAGCTCTGACCGGAATTCGATTCCCGAGGATTATCGGCGCCGGTTTGGCTTTGGACTCGAAAACCATGATGGTTTTGCTCGGCACGGGCTTGACTCTGGCCCTTCTGGGACCTGAATCGGCTTCCGCTGCGACGGAATTGCAGTCGTTGGGTGCTTCTTCGCTGCAGTTTAATGAGCCCCTAAATGCTCTGTCCTTACCCACCTGGGCCATACATGTTTCCAGTGTTGTTGAATGGATTACAGCAATGGCTTTGGTATGGCAATATGGAGAGAAATCTGGCAATGAGTCTTGGAAAGGACTTTCTTGGGGAATGGTACCTTTGCTAGGTGGGGCATTTTGTGCTTGCACGTGGCATTTTTTCTACAACTCCGAGTCTCTCGAGGTTTTGGTGGCTCTTCAGGCAATACTGACGGCTATAGGAAATGCCACAATGTGCATTGCTGCATTTCGCATCTACAAATCATCACAAGAACGTTCAAGTAACTTGTAA

Protein sequence

MSLTSTLLYSFSNPKWPISSSSSSLPRSGDFAAPSQALTGIRFPRIIGAGLALDSKTMMVLLGTGLTLALLGPESASAATELQSLGASSLQFNEPLNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAIGNATMCIAAFRIYKSSQERSSNL

Homology

[Close]

BLAST of Tan0020509 vs. ExPASy Swiss-Prot
Match: Q55720 (Ycf49-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll0608 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 7.6e-29
Identity = 58/101 (57.43%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 96  LNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHF 155
           +NALS+PTW +HVSSV+EWI A+ALV +Y  K+G   W+ L+WGMVP L  A CACTWHF
Sbjct: 1   MNALSIPTWMVHVSSVIEWIVAIALVSRYATKAGYGHWRALAWGMVPALVSATCACTWHF 60

Query: 156 FYNSESLEVLVALQAILTAIGNATMCIAAFRIYKSSQERSS 197
           F N+  L+ LV LQA+ T IGN T+C+AA+ IY+ S + S+
Sbjct: 61  FDNASQLDWLVTLQALTTVIGNITLCLAAWWIYRQSAQPSA 101

[Close]

BLAST of Tan0020509 vs. ExPASy Swiss-Prot
Match: P15811 (Uncharacterized protein ycf49 OS=Cyanophora paradoxa OX=2762 GN=ycf49 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.7e-08
Identity = 35/102 (34.31%), Postives = 49/102 (48.04%), Query Frame = 0


Query: 96  LNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHF 155
           +N LS  TW +H+SSV+EW+  +     Y +   N S K   +        A CACT HF
Sbjct: 1   MNVLSYFTWFVHLSSVLEWLNIIYFFLLYTKLKKNLSLKTFIFSFFISFCSALCACTLHF 60

Query: 156 FYNSESLEVLVALQAILTAIGNATMCIAAFRIYKSSQERSSN 198
           F N      L+ LQ+ LT   N T+  +   IYK    ++ N
Sbjct: 61  FNNQSFYYFLINLQSFLTLFANITLYFSIL-IYKQQILKNQN 101

[Close]

BLAST of Tan0020509 vs. ExPASy Swiss-Prot
Match: Q9TM18 (Uncharacterized protein ycf49 OS=Cyanidium caldarium OX=2771 GN=ycf49 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.7e-04
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 98  ALSLPTWAIHVSSVVEWITAMALVW---QYGEKSGNESWKGLSWGMVPLLGGAFCACTWH 157
           +LSLPTW IH+ ++VEW   + L++    + +   + ++  +   +   L G F AC WH
Sbjct: 3   SLSLPTWNIHIVTLVEWSIVIRLIYLFTYFYDIPRSFNFLIIILMIFFFLSGLF-ACCWH 62

Query: 158 FFYNSESLEVLVALQAILTAIGN 178
           FF N+  L  +   QA LTA  N
Sbjct: 63  FFNNNSILLWISVAQAALTAFSN 84

[Close]

BLAST of Tan0020509 vs. NCBI nr
Match: XP_023005556.1 (uncharacterized protein LOC111498507 [Cucurbita maxima])

HSP 1 Score: 347.1 bits (889), Expect = 1.0e-91
Identity = 187/202 (92.57%), Postives = 193/202 (95.54%), Query Frame = 0


Query: 1   MSLTSTLLYSFSNPKWPI-SSSSSSLPRSG-DFAAPSQALTGIRFPRIIGAGLALDSKTM 60
           MSLTSTLL+SFSNPK PI SSSSSSLPRS  DFAA SQALTGIRFPRIIGAGLALDSKTM
Sbjct: 1   MSLTSTLLHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRIIGAGLALDSKTM 60

Query: 61  MVLLGTGLTLALLGPES--ASAATELQSLGASSLQFNEPLNALSLPTWAIHVSSVVEWIT 120
           +VL+GTGLTLALLGPES  A+AATELQSLGASSLQFNEP NALSLPTWAIHVSSVVEWIT
Sbjct: 61  VVLIGTGLTLALLGPESAAATAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWIT 120

Query: 121 AMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAIG 180
           AMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA+G
Sbjct: 121 AMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVG 180

Query: 181 NATMCIAAFRIYKSSQERSSNL 199
           NATMCIAAFRIYK+SQERSS L
Sbjct: 181 NATMCIAAFRIYKASQERSSKL 202

[Close]

BLAST of Tan0020509 vs. NCBI nr
Match: XP_023539827.1 (uncharacterized protein LOC111800391 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 343.2 bits (879), Expect = 1.5e-90
Identity = 185/203 (91.13%), Postives = 191/203 (94.09%), Query Frame = 0


Query: 1   MSLTSTLLYSFSNPKWPI-SSSSSSLPRSG-DFAAPSQALTGIRFPRIIGAGLALDSKTM 60
           MSLTSTL +SFSNPK PI SSSSSSLPRS  DFAA SQALTGIRFPR IGAGLALDSKTM
Sbjct: 1   MSLTSTLFHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRTIGAGLALDSKTM 60

Query: 61  MVLLGTGLTLALLGPESA---SAATELQSLGASSLQFNEPLNALSLPTWAIHVSSVVEWI 120
           +VL+GTGLTLALLGPESA   +AATELQSLGASSLQFNEP NALSLPTWAIHVSSVVEWI
Sbjct: 61  VVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWI 120

Query: 121 TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAI 180
           TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA+
Sbjct: 121 TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV 180

Query: 181 GNATMCIAAFRIYKSSQERSSNL 199
           GNATMCIAAFRIYK+SQERSS L
Sbjct: 181 GNATMCIAAFRIYKASQERSSKL 203

[Close]

BLAST of Tan0020509 vs. NCBI nr
Match: XP_022944188.1 (uncharacterized protein LOC111448709 [Cucurbita moschata])

HSP 1 Score: 338.2 bits (866), Expect = 4.8e-89
Identity = 184/204 (90.20%), Postives = 190/204 (93.14%), Query Frame = 0


Query: 1   MSLTSTLLYSFSNPKWPI--SSSSSSLPRSG-DFAAPSQALTGIRFPRIIGAGLALDSKT 60
           MSLTSTL  SFSNPK PI  SSSSSSLPRS  DFAA SQALT IRFPRIIGAGLALDSKT
Sbjct: 1   MSLTSTLFRSFSNPKCPISSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKT 60

Query: 61  MMVLLGTGLTLALLGPESA---SAATELQSLGASSLQFNEPLNALSLPTWAIHVSSVVEW 120
           M+VL+GTGLTLALLGPESA   +AATELQSLGASSLQFNEP NALSLPTWAIHVSSVVEW
Sbjct: 61  MVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEW 120

Query: 121 ITAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA 180
           ITAMALVWQYGEKSG+ESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA
Sbjct: 121 ITAMALVWQYGEKSGDESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA 180

Query: 181 IGNATMCIAAFRIYKSSQERSSNL 199
           +GNATMCIAAFRIYK+SQERSS L
Sbjct: 181 VGNATMCIAAFRIYKASQERSSKL 204

[Close]

BLAST of Tan0020509 vs. NCBI nr
Match: KAG6596827.1 (hypothetical protein SDJN03_10007, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 337.8 bits (865), Expect = 6.3e-89
Identity = 184/205 (89.76%), Postives = 190/205 (92.68%), Query Frame = 0


Query: 1   MSLTSTLLYSFSNPKWPI---SSSSSSLPRSG-DFAAPSQALTGIRFPRIIGAGLALDSK 60
           MSLTSTL  SFSNPK PI   SSSSSSLPRS  DFAA SQALT IRFPRIIGAGLALDSK
Sbjct: 1   MSLTSTLFRSFSNPKCPISSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSK 60

Query: 61  TMMVLLGTGLTLALLGPESA---SAATELQSLGASSLQFNEPLNALSLPTWAIHVSSVVE 120
           TM+VL+GTGLTLALLGPESA   +AATELQSLGASSLQFNEP NALSLPTWAIHVSSVVE
Sbjct: 61  TMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVE 120

Query: 121 WITAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILT 180
           WITAMALVWQYGEKSG+ESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILT
Sbjct: 121 WITAMALVWQYGEKSGDESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILT 180

Query: 181 AIGNATMCIAAFRIYKSSQERSSNL 199
           A+GNATMCIAAFRIYK+SQERSS L
Sbjct: 181 AVGNATMCIAAFRIYKASQERSSKL 205

[Close]

BLAST of Tan0020509 vs. NCBI nr
Match: XP_022152779.1 (uncharacterized protein LOC111020415 [Momordica charantia])

HSP 1 Score: 331.6 bits (849), Expect = 4.5e-87
Identity = 177/199 (88.94%), Postives = 184/199 (92.46%), Query Frame = 0


Query: 1   MSLTSTLLYSFSNPKWPISSSSSSL-PRSGDFAAPSQALTGIRFPRIIGAGLALDSKTMM 60
           M LTSTLL+SFSNPK PISSSSSS  PRS DFAAPS+   GIRF RIIGAGL LDSK+M+
Sbjct: 1   MPLTSTLLHSFSNPKCPISSSSSSSPPRSRDFAAPSKXPPGIRFRRIIGAGLVLDSKSMV 60

Query: 61  VLLGTGLTLALLGPESASAATELQSLGASSLQFNEPLNALSLPTWAIHVSSVVEWITAMA 120
           VLLGTG TLALLGPESASAA ELQ+LGASSLQFNEP NALSLPTWAIHVSSVVEWITAMA
Sbjct: 61  VLLGTGFTLALLGPESASAAAELQALGASSLQFNEPQNALSLPTWAIHVSSVVEWITAMA 120

Query: 121 LVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAIGNAT 180
           LVWQYGEKSGNE+WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA+GNAT
Sbjct: 121 LVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVGNAT 180

Query: 181 MCIAAFRIYKSSQERSSNL 199
           MCIAAFRIYK SQERS NL
Sbjct: 181 MCIAAFRIYK-SQERSRNL 198

[Close]

BLAST of Tan0020509 vs. ExPASy TrEMBL
Match: A0A6J1KVA7 (uncharacterized protein LOC111498507 OS=Cucurbita maxima OX=3661 GN=LOC111498507 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 5.0e-92
Identity = 187/202 (92.57%), Postives = 193/202 (95.54%), Query Frame = 0


Query: 1   MSLTSTLLYSFSNPKWPI-SSSSSSLPRSG-DFAAPSQALTGIRFPRIIGAGLALDSKTM 60
           MSLTSTLL+SFSNPK PI SSSSSSLPRS  DFAA SQALTGIRFPRIIGAGLALDSKTM
Sbjct: 1   MSLTSTLLHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRIIGAGLALDSKTM 60

Query: 61  MVLLGTGLTLALLGPES--ASAATELQSLGASSLQFNEPLNALSLPTWAIHVSSVVEWIT 120
           +VL+GTGLTLALLGPES  A+AATELQSLGASSLQFNEP NALSLPTWAIHVSSVVEWIT
Sbjct: 61  VVLIGTGLTLALLGPESAAATAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWIT 120

Query: 121 AMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAIG 180
           AMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA+G
Sbjct: 121 AMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVG 180

Query: 181 NATMCIAAFRIYKSSQERSSNL 199
           NATMCIAAFRIYK+SQERSS L
Sbjct: 181 NATMCIAAFRIYKASQERSSKL 202

[Close]

BLAST of Tan0020509 vs. ExPASy TrEMBL
Match: A0A6J1FXT1 (uncharacterized protein LOC111448709 OS=Cucurbita moschata OX=3662 GN=LOC111448709 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.3e-89
Identity = 184/204 (90.20%), Postives = 190/204 (93.14%), Query Frame = 0


Query: 1   MSLTSTLLYSFSNPKWPI--SSSSSSLPRSG-DFAAPSQALTGIRFPRIIGAGLALDSKT 60
           MSLTSTL  SFSNPK PI  SSSSSSLPRS  DFAA SQALT IRFPRIIGAGLALDSKT
Sbjct: 1   MSLTSTLFRSFSNPKCPISSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKT 60

Query: 61  MMVLLGTGLTLALLGPESA---SAATELQSLGASSLQFNEPLNALSLPTWAIHVSSVVEW 120
           M+VL+GTGLTLALLGPESA   +AATELQSLGASSLQFNEP NALSLPTWAIHVSSVVEW
Sbjct: 61  MVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEW 120

Query: 121 ITAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA 180
           ITAMALVWQYGEKSG+ESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA
Sbjct: 121 ITAMALVWQYGEKSGDESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA 180

Query: 181 IGNATMCIAAFRIYKSSQERSSNL 199
           +GNATMCIAAFRIYK+SQERSS L
Sbjct: 181 VGNATMCIAAFRIYKASQERSSKL 204

[Close]

BLAST of Tan0020509 vs. ExPASy TrEMBL
Match: A0A6J1DH09 (uncharacterized protein LOC111020415 OS=Momordica charantia OX=3673 GN=LOC111020415 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.2e-87
Identity = 177/199 (88.94%), Postives = 184/199 (92.46%), Query Frame = 0


Query: 1   MSLTSTLLYSFSNPKWPISSSSSSL-PRSGDFAAPSQALTGIRFPRIIGAGLALDSKTMM 60
           M LTSTLL+SFSNPK PISSSSSS  PRS DFAAPS+   GIRF RIIGAGL LDSK+M+
Sbjct: 1   MPLTSTLLHSFSNPKCPISSSSSSSPPRSRDFAAPSKXPPGIRFRRIIGAGLVLDSKSMV 60

Query: 61  VLLGTGLTLALLGPESASAATELQSLGASSLQFNEPLNALSLPTWAIHVSSVVEWITAMA 120
           VLLGTG TLALLGPESASAA ELQ+LGASSLQFNEP NALSLPTWAIHVSSVVEWITAMA
Sbjct: 61  VLLGTGFTLALLGPESASAAAELQALGASSLQFNEPQNALSLPTWAIHVSSVVEWITAMA 120

Query: 121 LVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAIGNAT 180
           LVWQYGEKSGNE+WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA+GNAT
Sbjct: 121 LVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVGNAT 180

Query: 181 MCIAAFRIYKSSQERSSNL 199
           MCIAAFRIYK SQERS NL
Sbjct: 181 MCIAAFRIYK-SQERSRNL 198

[Close]

BLAST of Tan0020509 vs. ExPASy TrEMBL
Match: A0A1S3BLS2 (ycf49-like protein OS=Cucumis melo OX=3656 GN=LOC103490947 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.6e-74
Identity = 159/198 (80.30%), Postives = 165/198 (83.33%), Query Frame = 0


Query: 1   MSLTSTLLYSFSNPKWPISSSSSSLPRSGDFAAPSQALTGIRFPRIIGAGLALDSKTMMV 60
           MSLTS LLYSFS PK P       LP S DFA  +Q  TG+ F R I + L   SK M+V
Sbjct: 1   MSLTSPLLYSFSIPKSP-------LPISTDFAPTTQLPTGVSFRRPI-SRLGFPSKAMVV 60

Query: 61  LLGTGLTLALLGPESASAATELQSLGASSLQFNEPLNALSLPTWAIHVSSVVEWITAMAL 120
           LLGTG TLALLGPESASAATELQ    SSL FNEP NALSLPTWAIHVSSVVEWITAMAL
Sbjct: 61  LLGTGFTLALLGPESASAATELQ----SSLLFNEPQNALSLPTWAIHVSSVVEWITAMAL 120

Query: 121 VWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAIGNATM 180
           VWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVA+QA+LTAIGNATM
Sbjct: 121 VWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATM 180

Query: 181 CIAAFRIYKSSQERSSNL 199
           CIAAFRIYKSSQERS NL
Sbjct: 181 CIAAFRIYKSSQERSKNL 186

[Close]

BLAST of Tan0020509 vs. ExPASy TrEMBL
Match: A0A0A0L4G0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036550 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 6.2e-74
Identity = 159/198 (80.30%), Postives = 165/198 (83.33%), Query Frame = 0


Query: 1   MSLTSTLLYSFSNPKWPISSSSSSLPRSGDFAAPSQALTGIRFPRIIGAGLALDSKTMMV 60
           MSLTS LLYSFS PK P       LP S DFA   Q  TG+ F R I + L   SKTM+V
Sbjct: 1   MSLTSPLLYSFSIPKSP-------LPISTDFAPTFQLPTGVSFRRPI-SRLGFPSKTMVV 60

Query: 61  LLGTGLTLALLGPESASAATELQSLGASSLQFNEPLNALSLPTWAIHVSSVVEWITAMAL 120
           LLGTG TLALLGPESASAATEL    +SSL FNEP NALSLPTWAIHVSSVVEWITAMAL
Sbjct: 61  LLGTGFTLALLGPESASAATEL----SSSLLFNEPQNALSLPTWAIHVSSVVEWITAMAL 120

Query: 121 VWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAIGNATM 180
           VWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVA+QA+LTAIGNATM
Sbjct: 121 VWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAIGNATM 180

Query: 181 CIAAFRIYKSSQERSSNL 199
           CIAAFRIYKSSQERS NL
Sbjct: 181 CIAAFRIYKSSQERSKNL 186

[Close]

BLAST of Tan0020509 vs. TAIR 10
Match: AT4G22830.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634). )

HSP 1 Score: 186.8 bits (473), Expect = 1.7e-47
Identity = 98/152 (64.47%), Postives = 110/152 (72.37%), Query Frame = 0


Query: 45  RIIGAGLALDSKTMMVLLGTGLTLALL---GPESASAATELQSLGASSLQFNEPLNALSL 104
           RI    L  D   +  L+GT L  A     GP++ + A  +      SLQ +EP NALSL
Sbjct: 48  RIRSRSLIHDPVALSGLIGTSLVAAAFITAGPDATALAAVV-----DSLQLSEPSNALSL 107

Query: 105 PTWAIHVSSVVEWITAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSES 164
           PTWA+HVSSVVEWITAMALVW+YGE+ G ESWKGLSWGMVPLLGGA CACTWHFFYN ES
Sbjct: 108 PTWAVHVSSVVEWITAMALVWKYGERKGYESWKGLSWGMVPLLGGALCACTWHFFYNDES 167

Query: 165 LEVLVALQAILTAIGNATMCIAAFRIYKSSQE 194
           LEVLVALQA LT  GN T+CIAAFRI K S +
Sbjct: 168 LEVLVALQAALTVFGNITLCIAAFRINKLSSK 194

[Close]

BLAST of Tan0020509 vs. TAIR 10
Match: AT4G22830.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634); Has 319 Blast hits to 317 proteins in 103 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). )

HSP 1 Score: 186.4 bits (472), Expect = 2.2e-47
Identity = 108/195 (55.38%), Postives = 127/195 (65.13%), Query Frame = 0


Query: 4   TSTLLYSFSNPKWPISSSSSSLPRSGDFAAPSQALTGIRFP--RIIGAGLALDSKTMMVL 63
           T+T+L+  + P +    S S          P+ +LT    P  RI    L  D   +  L
Sbjct: 6   TATVLFCCAKPNFRRIHSES---------RPASSLTTSNEPVIRIRSRSLIHDPVALSGL 65

Query: 64  LGTGLTLALL---GPESASAATELQSLGASSLQFNEPLNALSLPTWAIHVSSVVEWITAM 123
           +GT L  A     GP++ + A  +      SLQ +EP NALSLPTWA+HVSSVVEWITAM
Sbjct: 66  IGTSLVAAAFITAGPDATALAAVV-----DSLQLSEPSNALSLPTWAVHVSSVVEWITAM 125

Query: 124 ALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAIGNA 183
           ALVW+YGE+ G ESWKGLSWGMVPLLGGA CACTWHFFYN ESLEVLVALQA LT  GN 
Sbjct: 126 ALVWKYGERKGYESWKGLSWGMVPLLGGALCACTWHFFYNDESLEVLVALQAALTVFGNI 185

Query: 184 TMCIAAFRIYKSSQE 194
           T+CIAAFRI K S +
Sbjct: 186 TLCIAAFRINKLSSK 186

The following BLAST results are available for this feature:

BLAST of Tan0020509 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q55720	7.6e-29	57.43	Ycf49-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]
P15811	5.7e-08	34.31	Uncharacterized protein ycf49 OS=Cyanophora paradoxa OX=2762 GN=ycf49 PE=3 SV=1	[more]
Q9TM18	1.7e-04	34.94	Uncharacterized protein ycf49 OS=Cyanidium caldarium OX=2771 GN=ycf49 PE=3 SV=1	[more]

BLAST of Tan0020509 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005556.1	1.0e-91	92.57	uncharacterized protein LOC111498507 [Cucurbita maxima]	[more]
XP_023539827.1	1.5e-90	91.13	uncharacterized protein LOC111800391 [Cucurbita pepo subsp. pepo]	[more]
XP_022944188.1	4.8e-89	90.20	uncharacterized protein LOC111448709 [Cucurbita moschata]	[more]
KAG6596827.1	6.3e-89	89.76	hypothetical protein SDJN03_10007, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022152779.1	4.5e-87	88.94	uncharacterized protein LOC111020415 [Momordica charantia]	[more]

BLAST of Tan0020509 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KVA7	5.0e-92	92.57	uncharacterized protein LOC111498507 OS=Cucurbita maxima OX=3661 GN=LOC111498507...	[more]
A0A6J1FXT1	2.3e-89	90.20	uncharacterized protein LOC111448709 OS=Cucurbita moschata OX=3662 GN=LOC1114487...	[more]
A0A6J1DH09	2.2e-87	88.94	uncharacterized protein LOC111020415 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A1S3BLS2	3.6e-74	80.30	ycf49-like protein OS=Cucumis melo OX=3656 GN=LOC103490947 PE=4 SV=1	[more]
A0A0A0L4G0	6.2e-74	80.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036550 PE=4 SV=1	[more]

BLAST of Tan0020509 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G22830.2	1.7e-47	64.47	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G22830.1	2.2e-47	55.38	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019634	Uncharacterised protein family Ycf49	PFAM	PF10693	DUF2499	coord: 98..185 e-value: 5.0E-39 score: 132.5
None	No IPR available	PANTHER	PTHR33833:SF4	YCF49-LIKE PROTEIN	coord: 57..196
None	No IPR available	PANTHER	PTHR33833	NUCLEOLAR-LIKE PROTEIN-RELATED	coord: 57..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0020509.1	Tan0020509.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane