Tan0020503 (gene) Snake gourd v1

Overview


Name	Tan0020503
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Precursor of CEP14
Location	LG07: 53094545 .. 53094856 (+)
RNA-Seq Expression	Tan0020503
Synteny	Tan0020503

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACCCCAATTAACAAATCCCTATTTCTCATCTTCTTCCTTCTTCTTTCTTCCATTTCCCCATCTTCTCAATTAAGAACCACCCTTCTCCTTCACAAGAAATACAACAACAACAACCTCTTGTCGGTCGTCCTCCCCAAAGGCGACGCGCCACCGTCTTCTCCCAGCAATATAGGCCACGTTGTCCTCACCAACCAGAAGCTCCTCCGTAGTCGTAGCCTCATTGTTGCCCCTCATCCCCGACATTATTACTACTATAACAACAATCGCATTCTCCGCTCCGTCCCTAGCCCCGGTGCCAACCATTAA

mRNA sequence

ATGGCTACCCCAATTAACAAATCCCTATTTCTCATCTTCTTCCTTCTTCTTTCTTCCATTTCCCCATCTTCTCAATTAAGAACCACCCTTCTCCTTCACAAGAAATACAACAACAACAACCTCTTGTCGGTCGTCCTCCCCAAAGGCGACGCGCCACCGTCTTCTCCCAGCAATATAGGCCACGTTGTCCTCACCAACCAGAAGCTCCTCCGTAGTCGTAGCCTCATTGTTGCCCCTCATCCCCGACATTATTACTACTATAACAACAATCGCATTCTCCGCTCCGTCCCTAGCCCCGGTGCCAACCATTAA

Coding sequence (CDS)

ATGGCTACCCCAATTAACAAATCCCTATTTCTCATCTTCTTCCTTCTTCTTTCTTCCATTTCCCCATCTTCTCAATTAAGAACCACCCTTCTCCTTCACAAGAAATACAACAACAACAACCTCTTGTCGGTCGTCCTCCCCAAAGGCGACGCGCCACCGTCTTCTCCCAGCAATATAGGCCACGTTGTCCTCACCAACCAGAAGCTCCTCCGTAGTCGTAGCCTCATTGTTGCCCCTCATCCCCGACATTATTACTACTATAACAACAATCGCATTCTCCGCTCCGTCCCTAGCCCCGGTGCCAACCATTAA

Protein sequence

MATPINKSLFLIFFLLLSSISPSSQLRTTLLLHKKYNNNNLLSVVLPKGDAPPSSPSNIGHVVLTNQKLLRSRSLIVAPHPRHYYYYNNNRILRSVPSPGANH

Homology

[Close]

BLAST of Tan0020503 vs. NCBI nr
Match: OVA16140.1 (hypothetical protein BVC80_8927g22 [Macleaya cordata])

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-05
Identity = 45/118 (38.14%), Postives = 59/118 (50.00%), Query Frame = 0


Query: 10  FLIFFLLLSSISPSSQLRTTLLLHKKYNNNN--------LLSVV-------------LPK 69
           F +  L+ SS+ PSS  R  LL  +K  NNN        +++VV             LPK
Sbjct: 15  FFLLALICSSLVPSSDARKLLLNMEKNTNNNKDMMMKKDVIAVVVPSSLRDSLVLNALPK 74

Query: 70  GDAPPSSPSNIGHVVLT-NQKLLR--SRSLIVAPHPRHYYYYNNNRILRSVPSPGANH 104
           G  PPS+PS  GH ++  N+KL R  + +    P P H      +RILRSVPSPG  H
Sbjct: 75  GSVPPSAPSKKGHAMININEKLFRTFATTYTTTPSPAHI-----DRILRSVPSPGVGH 127

[Close]

BLAST of Tan0020503 vs. NCBI nr
Match: XP_015065205.1 (precursor of CEP14 [Solanum pennellii])

HSP 1 Score: 58.2 bits (139), Expect = 5.0e-05
Identity = 40/102 (39.22%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 5   INKSLFLIFFLLLSSISPSSQLRTTLLLHKKYNNNNLLSV---VLPKGDAPPSSPSNIGH 64
           I+ S+ L+F L+L+S S S + R  L  H+    +NL S+    LPKG  P S+PS  GH
Sbjct: 6   ISTSILLMFVLILASFSSSMEARKLLNSHEAKKVSNLKSLYLNALPKGRVPASTPSKKGH 65

Query: 65  VVLTNQKLLRSRSLIVAPHPRHYYYYNNNRILRSVPSPGANH 104
              T++KL+      V            +RILRSVPSPG  H
Sbjct: 66  SYTTDEKLIARHLAAV------------DRILRSVPSPGVGH 95

[Close]

BLAST of Tan0020503 vs. NCBI nr
Match: XP_002265506.1 (PREDICTED: uncharacterized protein LOC100246308 [Vitis vinifera] >RVW31892.1 Precursor of CEP14 [Vitis vinifera] >RVW83825.1 Precursor of CEP14 [Vitis vinifera] >CAN69942.1 hypothetical protein VITISV_006130 [Vitis vinifera])

HSP 1 Score: 57.8 bits (138), Expect = 6.5e-05
Identity = 38/106 (35.85%), Postives = 54/106 (50.94%), Query Frame = 0


Query: 6   NKSLFLIFFLLLSSISPSSQLRTTLLLHKKYNNN--------NLLSVVLPKGDAPPSSPS 65
           +K+L LI F++ SS  PS   R  L + +  +N         +L+   LPKG  P SSPS
Sbjct: 4   HKALLLILFVVFSSFLPSLDARKLLDMEEDSHNKKSIPALEASLVLAALPKGTVPASSPS 63

Query: 66  NIGHVVLTNQKLLRSRSLIVAPHPRHYYYYNNNRILRSVPSPGANH 104
             GH ++ ++KL+     +V            +RILRSVPSPG  H
Sbjct: 64  KKGHAMVVDEKLIARHLAVV------------DRILRSVPSPGVGH 97

[Close]

BLAST of Tan0020503 vs. NCBI nr
Match: XP_006358104.1 (PREDICTED: uncharacterized protein LOC102597896 [Solanum tuberosum])

HSP 1 Score: 55.1 bits (131), Expect = 4.2e-04
Identity = 39/102 (38.24%), Postives = 52/102 (50.98%), Query Frame = 0


Query: 5   INKSLFLIFFLLLSSISPSSQLRTTLLLHKKYNNNNLLSV---VLPKGDAPPSSPSNIGH 64
           I+ S+ L+F L L+S S S + R  L  H+     NL S+    LPKG  P S+PS  GH
Sbjct: 6   ISTSILLMFVLFLASFSSSMEARKLLNSHEVKKIPNLRSLYLNALPKGIVPASTPSKKGH 65

Query: 65  VVLTNQKLLRSRSLIVAPHPRHYYYYNNNRILRSVPSPGANH 104
              T++KL+      +            +RILRSVPSPG  H
Sbjct: 66  SYTTDEKLIARHLATI------------DRILRSVPSPGVGH 95

[Close]

BLAST of Tan0020503 vs. NCBI nr
Match: OIT29134.1 (hypothetical protein A4A49_16180 [Nicotiana attenuata])

HSP 1 Score: 54.3 bits (129), Expect = 7.2e-04
Identity = 38/103 (36.89%), Postives = 52/103 (50.49%), Query Frame = 0


Query: 5   INKSLFLIFFLLLSSISPSSQLRTTLLLHKKYN----NNNLLSVVLPKGDAPPSSPSNIG 64
           I+ S+ L+F L+L+S S S++ R  L LH+        + L    LPKG  P S+PS  G
Sbjct: 6   ISSSILLMFILVLASFSSSTEARKLLKLHEVKKTPSLEDRLYLNALPKGRVPASTPSKKG 65

Query: 65  HVVLTNQKLLRSRSLIVAPHPRHYYYYNNNRILRSVPSPGANH 104
           H    ++KL+      V            +RILRSVPSPG  H
Sbjct: 66  HSYTIDEKLIARHLAAV------------DRILRSVPSPGVGH 96

[Close]

BLAST of Tan0020503 vs. ExPASy TrEMBL
Match: A0A200R0F1 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8927g22 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 8.3e-06
Identity = 45/118 (38.14%), Postives = 59/118 (50.00%), Query Frame = 0


Query: 10  FLIFFLLLSSISPSSQLRTTLLLHKKYNNNN--------LLSVV-------------LPK 69
           F +  L+ SS+ PSS  R  LL  +K  NNN        +++VV             LPK
Sbjct: 15  FFLLALICSSLVPSSDARKLLLNMEKNTNNNKDMMMKKDVIAVVVPSSLRDSLVLNALPK 74

Query: 70  GDAPPSSPSNIGHVVLT-NQKLLR--SRSLIVAPHPRHYYYYNNNRILRSVPSPGANH 104
           G  PPS+PS  GH ++  N+KL R  + +    P P H      +RILRSVPSPG  H
Sbjct: 75  GSVPPSAPSKKGHAMININEKLFRTFATTYTTTPSPAHI-----DRILRSVPSPGVGH 127

[Close]

BLAST of Tan0020503 vs. ExPASy TrEMBL
Match: A0A438HH69 (Precursor of CEP14 OS=Vitis vinifera OX=29760 GN=CEP14_0 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-05
Identity = 38/106 (35.85%), Postives = 54/106 (50.94%), Query Frame = 0


Query: 6   NKSLFLIFFLLLSSISPSSQLRTTLLLHKKYNNN--------NLLSVVLPKGDAPPSSPS 65
           +K+L LI F++ SS  PS   R  L + +  +N         +L+   LPKG  P SSPS
Sbjct: 4   HKALLLILFVVFSSFLPSLDARKLLDMEEDSHNKKSIPALEASLVLAALPKGTVPASSPS 63

Query: 66  NIGHVVLTNQKLLRSRSLIVAPHPRHYYYYNNNRILRSVPSPGANH 104
             GH ++ ++KL+     +V            +RILRSVPSPG  H
Sbjct: 64  KKGHAMVVDEKLIARHLAVV------------DRILRSVPSPGVGH 97

[Close]

BLAST of Tan0020503 vs. ExPASy TrEMBL
Match: A5BB23 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_006130 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-05
Identity = 38/106 (35.85%), Postives = 54/106 (50.94%), Query Frame = 0


Query: 6   NKSLFLIFFLLLSSISPSSQLRTTLLLHKKYNNN--------NLLSVVLPKGDAPPSSPS 65
           +K+L LI F++ SS  PS   R  L + +  +N         +L+   LPKG  P SSPS
Sbjct: 4   HKALLLILFVVFSSFLPSLDARKLLDMEEDSHNKKSIPALEASLVLAALPKGTVPASSPS 63

Query: 66  NIGHVVLTNQKLLRSRSLIVAPHPRHYYYYNNNRILRSVPSPGANH 104
             GH ++ ++KL+     +V            +RILRSVPSPG  H
Sbjct: 64  KKGHAMVVDEKLIARHLAVV------------DRILRSVPSPGVGH 97

[Close]

BLAST of Tan0020503 vs. ExPASy TrEMBL
Match: M1CRR9 (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102597896 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.1e-04
Identity = 39/102 (38.24%), Postives = 52/102 (50.98%), Query Frame = 0


Query: 5   INKSLFLIFFLLLSSISPSSQLRTTLLLHKKYNNNNLLSV---VLPKGDAPPSSPSNIGH 64
           I+ S+ L+F L L+S S S + R  L  H+     NL S+    LPKG  P S+PS  GH
Sbjct: 6   ISTSILLMFVLFLASFSSSMEARKLLNSHEVKKIPNLRSLYLNALPKGIVPASTPSKKGH 65

Query: 65  VVLTNQKLLRSRSLIVAPHPRHYYYYNNNRILRSVPSPGANH 104
              T++KL+      +            +RILRSVPSPG  H
Sbjct: 66  SYTTDEKLIARHLATI------------DRILRSVPSPGVGH 95

[Close]

BLAST of Tan0020503 vs. ExPASy TrEMBL
Match: A0A314KK12 (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_16180 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.5e-04
Identity = 38/103 (36.89%), Postives = 52/103 (50.49%), Query Frame = 0


Query: 5   INKSLFLIFFLLLSSISPSSQLRTTLLLHKKYN----NNNLLSVVLPKGDAPPSSPSNIG 64
           I+ S+ L+F L+L+S S S++ R  L LH+        + L    LPKG  P S+PS  G
Sbjct: 6   ISSSILLMFILVLASFSSSTEARKLLKLHEVKKTPSLEDRLYLNALPKGRVPASTPSKKG 65

Query: 65  HVVLTNQKLLRSRSLIVAPHPRHYYYYNNNRILRSVPSPGANH 104
           H    ++KL+      V            +RILRSVPSPG  H
Sbjct: 66  HSYTIDEKLIARHLAAV------------DRILRSVPSPGVGH 96

[Close]

BLAST of Tan0020503 vs. TAIR 10
Match: AT1G16950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 3.5e-04
Identity = 37/107 (34.58%), Postives = 52/107 (48.60%), Query Frame = 0


Query: 1   MATP-INKSLFLIFFLLLSSISPSSQLRTTLLLHKKYNNNNLLSVVLPKGDAPPSSPSNI 60
           MA P I+ S+  +  L++  +  SSQ R  L+ +    +  L    LPKG+ PPS PS+ 
Sbjct: 1   MARPRISISMICLLILIVGFVLQSSQARKVLVPYG--TSKGLFLSALPKGNVPPSGPSDK 60

Query: 61  GHVVL---TNQKLLRSRSLIVAPHPRHYYYYNNNRILRSVPSPGANH 104
           GH      T+Q+++   S      P  Y      R L SVPSPG  H
Sbjct: 61  GHTSPPDDTDQRMVPENS------PEIY------RRLESVPSPGVGH 93

The following BLAST results are available for this feature:

BLAST of Tan0020503 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0020503 vs. NCBI nr


Match Name	E-value	Identity	Description
OVA16140.1	1.7e-05	38.14	hypothetical protein BVC80_8927g22 [Macleaya cordata]	[more]
XP_015065205.1	5.0e-05	39.22	precursor of CEP14 [Solanum pennellii]	[more]
XP_002265506.1	6.5e-05	35.85	PREDICTED: uncharacterized protein LOC100246308 [Vitis vinifera] >RVW31892.1 Pre...	[more]
XP_006358104.1	4.2e-04	38.24	PREDICTED: uncharacterized protein LOC102597896 [Solanum tuberosum]	[more]
OIT29134.1	7.2e-04	36.89	hypothetical protein A4A49_16180 [Nicotiana attenuata]	[more]

BLAST of Tan0020503 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A200R0F1	8.3e-06	38.14	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8927g22 PE=4 SV=1	[more]
A0A438HH69	3.2e-05	35.85	Precursor of CEP14 OS=Vitis vinifera OX=29760 GN=CEP14_0 PE=4 SV=1	[more]
A5BB23	3.2e-05	35.85	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_006130 PE=4 SV=1	[more]
M1CRR9	2.1e-04	38.24	Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102597896 PE=4 SV=1	[more]
A0A314KK12	3.5e-04	36.89	Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_16180 PE=4 SV=1	[more]

BLAST of Tan0020503 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16950.1	3.5e-04	34.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038930	Precursor of CEP13/CEP14	PANTHER	PTHR37180	PRECURSOR OF CEP14	coord: 8..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0020503.1	Tan0020503.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006995	cellular response to nitrogen starvation
biological_process	GO:0006970	response to osmotic stress