Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGCATGTAGCATTATGGCAGGTACTTCAAAACACTCAAAGCATACGTGGACGAAAGTAGAGGATGCGAGGTTGGTAGAGTCACTGGTGTATTTAGTACATAATGGGTGGCGATCAGACAATGGGACATTCAGGCCTGGGTATCTCCAACATCTTCAGAAGATGCTAGCAGAGAAATTGCCAAATTCATCATTAGAACTAAATACCATCGACTGCAAAGTGAGAACTCTGGAAAAAACAATACAATCTTCATTGCGAGAGATGCTTGGGAATGGTTGTAGTGGTTTTGGTTGGAATGAAGAATTTAAATGTGTTGAAGCAGAGAAAGAGGTATTCGATGCGTGGGTTAAGGTAAGATAGTGTTATTATAACATATTATTATTAGCATTCATGGTAGATATATGTAATATATTTATTCACATGTAGAGCCATACAAATGCCAAAGGGATGAGGAACAAGCCATTTTCGCACTATGATGAGCTGGCAGTTGTCTTCGGAAAAGATAGAGCTACAGGAATAGGCGCAGAGACCCTAATGGAAATGACCTCTAATGTTGCGGAACAAATAGAGGAGGAGATTCGTTTGGGATCACAAGACTTCATAGGGACAAAACAACGAACGATGGAGAATCCAGGACTTGGTGACGTAGGGGAAGATGACTTGCCAGACACTCCTACTAGTAGGCGTAATACATCTGACATGTCTTCTAGATGTACTGGGAGCAAAAGAAAACGATCGTCCTTCCAGACTGAATTAATTGATGTTGTGCGGACAACAATGGATATGCATACCAGTCACATGCAACAACTTCTATCATGACAGAAGGAGAAGTATGAATTGGAGGCCACACGAAGGAAGGAAGTAGTCGATCTCTTGTATCAGATAGAAGGATTGACTGAGCATGATCGTGTCTCCCTGATTGACTTGCTTGTGACTGATATCCAGAAGACTGATTGTTTTCTACAGGTTCCGCCTCAATCGAGAAAGGCGTATTGCATGCGTCTTCTAGGAAGGACTGAATGA
mRNA sequence
ATGCATGCATGTAGCATTATGGCAGGTACTTCAAAACACTCAAAGCATACGTGGACGAAAGTAGAGGATGCGAGGTTGGTAGAGTCACTGGTGTATTTAGTACATAATGGGTGGCGATCAGACAATGGGACATTCAGGCCTGGGTATCTCCAACATCTTCAGAAGATGCTAGCAGAGAAATTGCCAAATTCATCATTAGAACTAAATACCATCGACTGCAAAGTGAGAACTCTGGAAAAAACAATACAATCTTCATTGCGAGAGATGCTTGGGAATGGTTGTAGTGGTTTTGGTTGGAATGAAGAATTTAAATGTGTTGAAGCAGAGAAAGAGGTATTCGATGCGTGGGTTAAGAGCCATACAAATGCCAAAGGGATGAGGAACAAGCCATTTTCGCACTATGATGAGCTGGCAGTTGTCTTCGGAAAAGATAGAGCTACAGGAATAGGCGCAGAGACCCTAATGGAAATGACCTCTAATGTTGCGGAACAAATAGAGGAGGAGATTCGTTTGGGATCACAAGACTTCATAGGGACAAAACAACGAACGATGGAGAATCCAGGACTTGGTGACGTAGGGGAAGATGACTTGCCAGACACTCCTACTAGTAGGCGTAATACATCTGACATGTCTTCTAGATGTACTGGGAGCAAAAGAAAACGATCGTCCTTCCAGACTGAATTAATTGATGTTAAGGAGAAGTATGAATTGGAGGCCACACGAAGGAAGGAAGTAGTCGATCTCTTGTATCAGATAGAAGGATTGACTGAGCATGATCGTGTCTCCCTGATTGACTTGCTTGTGACTGATATCCAGAAGACTGATTGTTTTCTACAGGTTCCGCCTCAATCGAGAAAGGCGTATTGCATGCGTCTTCTAGGAAGGACTGAATGA
Coding sequence (CDS)
ATGCATGCATGTAGCATTATGGCAGGTACTTCAAAACACTCAAAGCATACGTGGACGAAAGTAGAGGATGCGAGGTTGGTAGAGTCACTGGTGTATTTAGTACATAATGGGTGGCGATCAGACAATGGGACATTCAGGCCTGGGTATCTCCAACATCTTCAGAAGATGCTAGCAGAGAAATTGCCAAATTCATCATTAGAACTAAATACCATCGACTGCAAAGTGAGAACTCTGGAAAAAACAATACAATCTTCATTGCGAGAGATGCTTGGGAATGGTTGTAGTGGTTTTGGTTGGAATGAAGAATTTAAATGTGTTGAAGCAGAGAAAGAGGTATTCGATGCGTGGGTTAAGAGCCATACAAATGCCAAAGGGATGAGGAACAAGCCATTTTCGCACTATGATGAGCTGGCAGTTGTCTTCGGAAAAGATAGAGCTACAGGAATAGGCGCAGAGACCCTAATGGAAATGACCTCTAATGTTGCGGAACAAATAGAGGAGGAGATTCGTTTGGGATCACAAGACTTCATAGGGACAAAACAACGAACGATGGAGAATCCAGGACTTGGTGACGTAGGGGAAGATGACTTGCCAGACACTCCTACTAGTAGGCGTAATACATCTGACATGTCTTCTAGATGTACTGGGAGCAAAAGAAAACGATCGTCCTTCCAGACTGAATTAATTGATGTTAAGGAGAAGTATGAATTGGAGGCCACACGAAGGAAGGAAGTAGTCGATCTCTTGTATCAGATAGAAGGATTGACTGAGCATGATCGTGTCTCCCTGATTGACTTGCTTGTGACTGATATCCAGAAGACTGATTGTTTTCTACAGGTTCCGCCTCAATCGAGAAAGGCGTATTGCATGCGTCTTCTAGGAAGGACTGAATGA
Protein sequence
MHACSIMAGTSKHSKHTWTKVEDARLVESLVYLVHNGWRSDNGTFRPGYLQHLQKMLAEKLPNSSLELNTIDCKVRTLEKTIQSSLREMLGNGCSGFGWNEEFKCVEAEKEVFDAWVKSHTNAKGMRNKPFSHYDELAVVFGKDRATGIGAETLMEMTSNVAEQIEEEIRLGSQDFIGTKQRTMENPGLGDVGEDDLPDTPTSRRNTSDMSSRCTGSKRKRSSFQTELIDVKEKYELEATRRKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKAYCMRLLGRTE
Homology
BLAST of Tan0020073 vs. NCBI nr
Match:
XP_038887234.1 (uncharacterized protein LOC120077425 [Benincasa hispida])
HSP 1 Score: 283.1 bits (723), Expect = 2.8e-72
Identity = 158/308 (51.30%), Postives = 196/308 (63.64%), Query Frame = 0
Query: 7 MAGTSKHSKHTWTKVEDARLVESLVYLVHNGWRSDNGTFRPGYLQHLQKMLAEKLPNSSL 66
M G SK SKH W+KVEDARLVE+L+YLV GWRSDNGTFRPGYLQHL+++L EK+P +L
Sbjct: 1 MTGNSKRSKHVWSKVEDARLVEALLYLVETGWRSDNGTFRPGYLQHLEQILHEKVPGCAL 60
Query: 67 ELNTIDCKVRTLEKTIQSSLREMLGNGCSGFGWNEEFKCVEAEKEVFDAWVKSHTNAKGM 126
NTI+CKVR+L+K +++ EML SGF WNEEFKCV+ E+E+FD WV+SH NAKGM
Sbjct: 61 NKNTIECKVRSLKKQ-YNAVSEMLSQ--SGFNWNEEFKCVQVEREIFDLWVRSHPNAKGM 120
Query: 127 RNKPFSHYDELAVVFGKDRATGIGAETLMEMTSNVAEQIEEEIRLGSQDFIGTKQRTMEN 186
KPF HYD+L+ VFGKDRA D + R E+
Sbjct: 121 WKKPFPHYDDLSAVFGKDRA----------------------------DCHTPEVRQTES 180
Query: 187 PGLGDVGEDDLPDTPTSRRNTSDMSSRCTGSKRKRSSFQTELIDV--------------- 246
P D +++ + T R + SSR GSKRKRSSFQ E+ID+
Sbjct: 181 PLNQDEIDEEPAEQSTGRASVPTESSR--GSKRKRSSFQVEMIDIVKSTVEMQSTHMGRL 240
Query: 247 ----KEKYELEATRRKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKA 296
EKYELE KEVV+ +Y I+ L E+D+V+LIDL+VTDIQKTDCFL VP +RK
Sbjct: 241 ASWQNEKYELEL---KEVVNAIYNIDDLEENDQVTLIDLIVTDIQKTDCFLAVPEHARKR 272
BLAST of Tan0020073 vs. NCBI nr
Match:
XP_038896380.1 (uncharacterized protein LOC120084641 [Benincasa hispida])
HSP 1 Score: 278.5 bits (711), Expect = 6.8e-71
Identity = 156/308 (50.65%), Postives = 193/308 (62.66%), Query Frame = 0
Query: 7 MAGTSKHSKHTWTKVEDARLVESLVYLVHNGWRSDNGTFRPGYLQHLQKMLAEKLPNSSL 66
MAG+ K SKH W+KVED +LVE+L+YLV GWRSDNGTFR GYLQ+L+++L EK+P +L
Sbjct: 1 MAGSGKRSKHVWSKVEDTKLVEALLYLVETGWRSDNGTFRLGYLQYLERILHEKVPGCAL 60
Query: 67 ELNTIDCKVRTLEKTIQSSLREMLGNGCSGFGWNEEFKCVEAEKEVFDAWVKSHTNAKGM 126
NTI+CKVR+L+K +++ EML SGFGWNEEFKCV+ EKE+FD WV+SH NAKGM
Sbjct: 61 NQNTIECKVRSLKKQ-YNAVSEMLSQ--SGFGWNEEFKCVQVEKEIFDLWVRSHLNAKGM 120
Query: 127 RNKPFSHYDELAVVFGKDRATGIGAETLMEMTSNVAEQIEEEIRLGSQDFIGTKQRTMEN 186
NK F HYD+L+ VFGKDRA E + ++I+EE
Sbjct: 121 WNKSFLHYDDLSTVFGKDRANCHTPEVCQAESPLNQDEIDEE------------------ 180
Query: 187 PGLGDVGEDDLPDTPTSRRNTSDMSSRCTGSKRKRSSFQTELIDV--------------- 246
+ T R + SSR GSKRKR SFQ E+ID+
Sbjct: 181 ----------PAEQSTGRASVLAESSR--GSKRKRPSFQAEMIDIMRSTVEMQSTHMGRL 240
Query: 247 ----KEKYELEATRRKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKA 296
KEKYELE RRKEVV+ +Y I+GL E D+V+ IDLLVTDIQKTDCFL VP +RK
Sbjct: 241 ASWQKEKYELEFGRRKEVVNAIYSIDGLDEDDQVTFIDLLVTDIQKTDCFLAVPEHARKR 275
BLAST of Tan0020073 vs. NCBI nr
Match:
XP_038895773.1 (uncharacterized protein LOC120083935 [Benincasa hispida])
HSP 1 Score: 272.7 bits (696), Expect = 3.7e-69
Identity = 148/284 (52.11%), Postives = 187/284 (65.85%), Query Frame = 0
Query: 12 KHSKHTWTKVEDARLVESLVYLVHNGWRSDNGTFRPGYLQHLQKMLAEKLPNSSLELNTI 71
K SKH W+KVEDA+ VE+L+YLV GWRSDNGTFR YLQHL+++ EK+ +L NTI
Sbjct: 44 KRSKHVWSKVEDAKFVEALLYLVDTGWRSDNGTFRLEYLQHLERIHHEKVLGCALNQNTI 103
Query: 72 DCKVRTLEKTIQSSLREMLGNGCSGFGWNEEFKCVEAEKEVFDAWVKSHTNAKGMRNKPF 131
+CKVR+L+K +++ EML SGF WNEEFKCV+ E+E+FD WV+SH NAKGM NKPF
Sbjct: 104 ECKVRSLKKQC-NAVSEMLSQ--SGFDWNEEFKCVQVEREIFDPWVRSHPNAKGMWNKPF 163
Query: 132 SHYDELAVVFGKDRATGIGAETLMEMTSNVAEQIEEEIRLGSQDFIGTKQRTMENPGLGD 191
HYD+L+ VFGK +A G +E MT+N + E+EIRLGSQD T E+ +G
Sbjct: 164 PHYDDLSTVFGKYKAVGQSSEDPYVMTTNAFREFEDEIRLGSQDC-----HTPESTHMG- 223
Query: 192 VGEDDLPDTPTSRRNTSDMSSRCTGSKRKRSSFQTELIDVKEKYELEATRRKEVVDLLYQ 251
+ +S+Q KEKYELE RRKEVV+ +Y
Sbjct: 224 ----------------------------RLASWQ------KEKYELEFGRRKEVVNAIYN 283
Query: 252 IEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKAYCMRLLGR 296
I+GL E D+V+LIDLLVTDIQKT+CFL VP +RK YC+RLLGR
Sbjct: 284 IDGLDEDDQVTLIDLLVTDIQKTNCFLAVPEHARKRYCLRLLGR 284
BLAST of Tan0020073 vs. NCBI nr
Match:
XP_038902479.1 (uncharacterized protein At2g29880-like [Benincasa hispida])
HSP 1 Score: 226.9 bits (577), Expect = 2.3e-55
Identity = 118/218 (54.13%), Postives = 148/218 (67.89%), Query Frame = 0
Query: 7 MAGTSKHSKHTWTKVEDARLVESLVYLVHNGWRSDNGTFRPGYLQHLQKMLAEKLPNSSL 66
M K SKH W+KVEDA+LVE+L+YLV GWRSDNGTFRPGYLQHL+++L EK+P +L
Sbjct: 1 MTSNGKRSKHIWSKVEDAKLVEALLYLVETGWRSDNGTFRPGYLQHLERILHEKVPGCTL 60
Query: 67 ELNTIDCKVRTLEKTIQSSLREMLGNGCSGFGWNEEFKCVEAEKEVFDAWVKSHTNAKGM 126
NTI+CKVR+L+K + + EML SGF WNEEFKCV+ E+E+FD WV SH NAK M
Sbjct: 61 NQNTIECKVRSLKKQ-YNIVSEMLSQ--SGFDWNEEFKCVQVEREIFDLWVLSHPNAKRM 120
Query: 127 RNKPFSHYDELAVVFGKDRATGIGAETLMEMTSNVAEQIEEEIRLGSQDFIGTKQRTMEN 186
NKPF HYD+ + VFGKDR G +E M +N + E+EIRLGSQD + R E+
Sbjct: 121 WNKPFPHYDDFSTVFGKDRVVGKSSEDPYVMATNAFREFEDEIRLGSQDCQTPEVRQTES 180
Query: 187 PGLGDVGEDDLPDTPTSRRNTSDMSSRCTGSKRKRSSF 225
P D +++ + T R + SSR GSKRKR SF
Sbjct: 181 PLNQDEIDEEPAEQSTGRASVPAKSSR--GSKRKRPSF 213
BLAST of Tan0020073 vs. NCBI nr
Match:
XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 219.9 bits (559), Expect = 2.9e-53
Identity = 130/306 (42.48%), Postives = 182/306 (59.48%), Query Frame = 0
Query: 7 MAGTSKHSKHTWTKVEDARLVESLVYLVHN-GWRSDNGTFRPGYLQHLQKMLAEKLPNSS 66
MA S+ KHTWTK E+ + VE LV LV + GWRSDNGTF+PGYL LQ+M+AEKLP ++
Sbjct: 1 MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60
Query: 67 L-ELNTIDCKVRTLEKTIQSSLREMLGNGCSGFGWNEEFKCVEAEKEVFDAWVKSHTNAK 126
+ E +TIDC V++L+KT ++ EM G CSGFGWNEEF+C+ AE+++FD+W+KSH AK
Sbjct: 61 IQESSTIDCHVKSLKKTYH-AIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAK 120
Query: 127 GMRNKPFSHYDELAVVFGKDRATGIGAETLMEMTSNVAEQIEEEIRLGSQDFIGTKQRTM 186
G+ +K F +YD+L+ VFGKDRATG +ET + SNV+ + I LG D TM
Sbjct: 121 GLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLG--DSHDEDIPTM 180
Query: 187 ENPGLGDVGEDDL----PDTPTSRRNTSDMSSRCTGSKRKRS--------SFQTELIDV- 246
+ G+ + D++ + RRN S +S R GS+R + F E +
Sbjct: 181 YSQGV-HMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAI 240
Query: 247 ----KEKYELEATRRKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKA 294
KEK +E R +VV L I L DR L+ +L ++ + FL +P + +
Sbjct: 241 ADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLE 300
BLAST of Tan0020073 vs. ExPASy TrEMBL
Match:
A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)
HSP 1 Score: 219.9 bits (559), Expect = 1.4e-53
Identity = 130/306 (42.48%), Postives = 182/306 (59.48%), Query Frame = 0
Query: 7 MAGTSKHSKHTWTKVEDARLVESLVYLVHN-GWRSDNGTFRPGYLQHLQKMLAEKLPNSS 66
MA S+ KHTWTK E+ + VE LV LV + GWRSDNGTF+PGYL LQ+M+AEKLP ++
Sbjct: 1 MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60
Query: 67 L-ELNTIDCKVRTLEKTIQSSLREMLGNGCSGFGWNEEFKCVEAEKEVFDAWVKSHTNAK 126
+ E +TIDC V++L+KT ++ EM G CSGFGWNEEF+C+ AE+++FD+W+KSH AK
Sbjct: 61 IQESSTIDCHVKSLKKTYH-AIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAK 120
Query: 127 GMRNKPFSHYDELAVVFGKDRATGIGAETLMEMTSNVAEQIEEEIRLGSQDFIGTKQRTM 186
G+ +K F +YD+L+ VFGKDRATG +ET + SNV+ + I LG D TM
Sbjct: 121 GLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLG--DSHDEDIPTM 180
Query: 187 ENPGLGDVGEDDL----PDTPTSRRNTSDMSSRCTGSKRKRS--------SFQTELIDV- 246
+ G+ + D++ + RRN S +S R GS+R + F E +
Sbjct: 181 YSQGV-HMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAI 240
Query: 247 ----KEKYELEATRRKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKA 294
KEK +E R +VV L I L DR L+ +L ++ + FL +P + +
Sbjct: 241 ADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLE 300
BLAST of Tan0020073 vs. ExPASy TrEMBL
Match:
A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)
HSP 1 Score: 219.9 bits (559), Expect = 1.4e-53
Identity = 130/306 (42.48%), Postives = 182/306 (59.48%), Query Frame = 0
Query: 7 MAGTSKHSKHTWTKVEDARLVESLVYLVHN-GWRSDNGTFRPGYLQHLQKMLAEKLPNSS 66
MA S+ KHTWTK E+ + VE LV LV + GWRSDNGTF+PGYL LQ+M+AEKLP ++
Sbjct: 1 MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60
Query: 67 L-ELNTIDCKVRTLEKTIQSSLREMLGNGCSGFGWNEEFKCVEAEKEVFDAWVKSHTNAK 126
+ E +TIDC V++L+KT ++ EM G CSGFGWNEEF+C+ AE+++FD+W+KSH AK
Sbjct: 61 IQESSTIDCHVKSLKKTYH-AIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAK 120
Query: 127 GMRNKPFSHYDELAVVFGKDRATGIGAETLMEMTSNVAEQIEEEIRLGSQDFIGTKQRTM 186
G+ +K F +YD+L+ VFGKDRATG +ET + SNV+ + I LG D TM
Sbjct: 121 GLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLG--DSHDEDIPTM 180
Query: 187 ENPGLGDVGEDDL----PDTPTSRRNTSDMSSRCTGSKRKRS--------SFQTELIDV- 246
+ G+ + D++ + RRN S +S R GS+R + F E +
Sbjct: 181 YSQGV-HMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAI 240
Query: 247 ----KEKYELEATRRKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKA 294
KEK +E R +VV L I L DR L+ +L ++ + FL +P + +
Sbjct: 241 ADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLE 300
BLAST of Tan0020073 vs. ExPASy TrEMBL
Match:
A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1)
HSP 1 Score: 206.5 bits (524), Expect = 1.6e-49
Identity = 132/307 (43.00%), Postives = 177/307 (57.65%), Query Frame = 0
Query: 7 MAGTSKHSKHTWTKVEDARLVESLVYLVH-NGWRSDNGTFRPGYLQHLQKMLAEKLPNSS 66
M +S+ KHTWTK E+A LVE LV LV+ GWRSDNGTFRPGYL L +M+A K+P S+
Sbjct: 1 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60
Query: 67 LELNTIDCKVRTLEKTIQSSLREMLGNGCSGFGWNEEFKCVEAEKEVFDAWVKSHTNAKG 126
+ +TID +++ L K + +L EM G CSGFGWN+E KC+ AEKEVFD W SH AKG
Sbjct: 61 IHASTIDSRIK-LMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKG 120
Query: 127 MRNKPFSHYDELAVVFGKDRATGIGAETLMEMTSNVAEQIEEEIRLGSQDFIGTKQRTME 186
+ NK F HYDEL+ VFGKDRATG AE+ ++ SN + E D T M
Sbjct: 121 LLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAEAADAMPD---TDFPPMY 180
Query: 187 NPGLGDVGEDDLPDTPTSRRNTSDMSSRCTGSKRKRSSFQTELIDVKEK----------- 246
+PGL ++ DDL +T T+R S+ + +GSKRKR T+ D+
Sbjct: 181 SPGL-NMSPDDLMETRTAR--VSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHR 240
Query: 247 -------YELEATR-RKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRK 294
+AT+ R+E+V L I LT DR L+ +L+ ++ FL+VP +
Sbjct: 241 IAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKY 298
BLAST of Tan0020073 vs. ExPASy TrEMBL
Match:
E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)
HSP 1 Score: 206.5 bits (524), Expect = 1.6e-49
Identity = 133/309 (43.04%), Postives = 180/309 (58.25%), Query Frame = 0
Query: 6 IMAGTSKHSKHTWTKVEDARLVESLVYLVH-NGWRSDNGTFRPGYLQHLQKMLAEKLPNS 65
IM +S+ KHTWTK E+A LVE LV LV+ GWRSDNGTFRPGYL L +M+A K+P S
Sbjct: 355 IMTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGS 414
Query: 66 SLELNTIDCKVRTLEKTIQSSLREMLGNGCSGFGWNEEFKCVEAEKEVFDAWVKSHTNAK 125
++ +TID +++ L K + +L EM G CSGFGWN+E KC+ AEKEVFD W SH AK
Sbjct: 415 NIHASTIDSRIK-LMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAK 474
Query: 126 GMRNKPFSHYDELAVVFGKDRATGIGAETLMEMTSNVAEQIEEEIRLGSQDFI-GTKQRT 185
G+ NK F HYDEL+ VFGKDRATG AE+ ++ SN + G+ D + T
Sbjct: 475 GLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYD----AGAADAMPDTDFPP 534
Query: 186 MENPGLGDVGEDDLPDTPTSRRNTSDMSSRCTGSKRKRSSFQTELIDVKEK--------- 245
M +PGL ++ DDL +T T+R S+ + +GSKRKR T+ D+
Sbjct: 535 MYSPGL-NMSPDDLMETRTAR--VSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQL 594
Query: 246 ---------YELEATR-RKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQS 294
+AT+ R+E+V L I LT DR L+ +L+ ++ FL+VP
Sbjct: 595 HRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHM 653
BLAST of Tan0020073 vs. ExPASy TrEMBL
Match:
A0A5D3CBF7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00350 PE=4 SV=1)
HSP 1 Score: 204.9 bits (520), Expect = 4.6e-49
Identity = 132/308 (42.86%), Postives = 179/308 (58.12%), Query Frame = 0
Query: 7 MAGTSKHSKHTWTKVEDARLVESLVYLVH-NGWRSDNGTFRPGYLQHLQKMLAEKLPNSS 66
M +S+ KHTWTK E+A LVE LV LV+ GWRSDNGTFRPGYL L +M+A K+P S+
Sbjct: 1 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60
Query: 67 LELNTIDCKVRTLEKTIQSSLREMLGNGCSGFGWNEEFKCVEAEKEVFDAWVKSHTNAKG 126
+ +TID +++ L K + +L EM G CSGFGWN+E KC+ AEKEVFD W SH AKG
Sbjct: 61 IHASTIDSRIK-LMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKG 120
Query: 127 MRNKPFSHYDELAVVFGKDRATGIGAETLMEMTSNVAEQIEEEIRLGSQDFI-GTKQRTM 186
+ NK F HYDEL+ VFGKDRATG AE+ ++ SN + G+ D + T M
Sbjct: 121 LLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYD----AGAADAMPDTDFPPM 180
Query: 187 ENPGLGDVGEDDLPDTPTSRRNTSDMSSRCTGSKRKRSSFQTELIDVKEK---------- 246
+PGL ++ DDL +T T+R S+ + +GSKRKR T+ D+
Sbjct: 181 YSPGL-NMSPDDLMETRTAR--VSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLH 240
Query: 247 --------YELEATR-RKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSR 294
+AT+ R+E+V L I LT DR L+ +L+ ++ FL+VP +
Sbjct: 241 RIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMK 298
BLAST of Tan0020073 vs. TAIR 10
Match:
AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )
HSP 1 Score: 60.1 bits (144), Expect = 3.5e-09
Identity = 45/152 (29.61%), Postives = 69/152 (45.39%), Query Frame = 0
Query: 9 GTSKHSKHTWTKVEDARLVESLVYLVHNGWRSDNGTFRPGYLQHLQKML--AEKLPNSSL 68
G K + WT E L+E L+ WR +G G L K+L K +
Sbjct: 8 GKEKGPYNQWTPDETDVLIE----LIRQNWRDSSGII--GKLTVESKLLPALNKRLGCNK 67
Query: 69 ELNTIDCKVRTLEKTIQSSLREMLGNGCSGFGWNEEFKCVEAEKEVFDAWVKSHTNAKGM 128
+++ L+ QS L L SGFGW+ E K A EV+ ++K+H N K M
Sbjct: 68 NHKNYMSRLKFLKNLYQSYLD--LKRFSSGFGWDPETKKFTAPDEVWRDYLKAHPNHKHM 127
Query: 129 RNKPFSHYDELAVVFGKDRATGIGAETLMEMT 159
+ + H+++L ++FG ATG A + + T
Sbjct: 128 QTESIDHFEDLQIIFGDVVATGSFAVGMSDST 151
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_038887234.1 | 2.8e-72 | 51.30 | uncharacterized protein LOC120077425 [Benincasa hispida] | [more] |
XP_038896380.1 | 6.8e-71 | 50.65 | uncharacterized protein LOC120084641 [Benincasa hispida] | [more] |
XP_038895773.1 | 3.7e-69 | 52.11 | uncharacterized protein LOC120083935 [Benincasa hispida] | [more] |
XP_038902479.1 | 2.3e-55 | 54.13 | uncharacterized protein At2g29880-like [Benincasa hispida] | [more] |
XP_008441954.1 | 2.9e-53 | 42.48 | PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7U0H7 | 1.4e-53 | 42.48 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3B4L3 | 1.4e-53 | 42.48 | uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... | [more] |
A0A5A7UME4 | 1.6e-49 | 43.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
E5GCB5 | 1.6e-49 | 43.04 | Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1 | [more] |
A0A5D3CBF7 | 4.6e-49 | 42.86 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
AT1G30140.1 | 3.5e-09 | 29.61 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |