Tan0019615 (gene) Snake gourd v1

Overview
NameTan0019615
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionIleal sodium/bile acid cotransporter, putative
LocationLG11: 15794259 .. 15795616 (+)
RNA-Seq ExpressionTan0019615
SyntenyTan0019615
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTAATTCAATGACTTGCCATGATACTAGTATTTAAATGATGACTTGAAATGTCTATTAGAAAAATATGAACTGATTTGATATGATGTAGTAGACAATTATTAAAAGAACTTAAACAAAGTGAAATATAGATCGACAATTTAGGAAAAGGAAATTTTGATATATTGCTTAGAGAAAAAAGAGAGTATGTTGCATATGACCCGACATTAACAGTTAACTATATTCAAATTCACAATATGTGACATGATAGTGTAAAACAGATGAGACTAAATTGAATCACAAATAAAAATTCTAAGGACAAACAAGATTTTAAAAAATGAGACACAACTAGAATTCAATAAATTAAAATTAAAACTTTTTCTTTTTTCTTTTGAAGAATATCACAGAAAGATCCTAACCAACTATAACTTTAACCCTTACAAACTAACTTTCCTAGAAAAATTGAAGACAAAAAAGAAAGAAATTTCTTTGAACAAGCTAAATCTTTTCAGAAAACATGTATGTCCAAGCTCTCTTATCCTTCACATTCACACTCCAATGACCAAGTAAGTACCATGAAAGTACAATTGAAGTAATGATAGTGTATGAAAGGGAAGGAATAGTCAAACAACATGGCTCAAAAAGTTAGAGGAAAAAAACCACTCCCTACAATTTCTTGGCAACTTATTCTTTAACTTGTAATAGAATTACAATAAATAAAATAAAAGAAATTGTAGTAGAATCACAGAAAATTCTCTCTTTATATTCTAGAATACTCCAAACAACATTAAAATGGAAACAAATCAATACTAAATTGGTCCAAGGGAAACCCCTTGAAAGTATTGAGAAAATTTTCCAATTTTTTTTTCTTGTTCTGTTTCCCAATGCCTTCAACTTCACACCAAACCTATGTGGATCTCAATGCCCTTTCTTCCTTTATCCCTACAATTAATCAAAGAAACTATGGAATCAGCATTTTTTCCACACCATCAGATTGCCTTCCAATTTGCATCAGAATGCAGCAGCAGAGGCCTCAACCAGCAGCCACTAGCCCTCCGAATCTTGGGAAGACCATTCTTGGCCTTACATTTCAAGCAGTTTTGGCCTTGTTCATTAGCACACCAAATTCATCTCCTCCACTTTTGACACATCTTTTTGGTGCTGCTGTGTTGATTAGCTTTGCAGTTTCATTTGCAAGTCTTTTCCTTCAAAATGTGTTCCCGAGACTCGCACGTTTGTTCGAAAAGATCGGTGCCCTTTTCGCTGCAATTGGTGTGTGCATCATATCAAGTCTTCTTCTTGTTCATCAGAACTTTGCTTGGATCTGTTGGTTGGCTTGTGCCTTCTCCTTGATTGTCTTTGTTCTATCATTCAAGTGA

mRNA sequence

CTTTAATTCAATGACTTGCCATGATACTAGTATTTAAATGATGACTTGAAATGTCTATTAGAAAAATATGAACTGATTTGATATGATGTAGTAGACAATTATTAAAAGAACTTAAACAAAGTGAAATATAGATCGACAATTTAGGAAAAGGAAATTTTGATATATTGCTTAGAGAAAAAAGAGAGTATGTTGCATATGACCCGACATTAACAGTTAACTATATTCAAATTCACAATATGTGACATGATAGTGTAAAACAGATGAGACTAAATTGAATCACAAATAAAAATTCTAAGGACAAACAAGATTTTAAAAAATGAGACACAACTAGAATTCAATAAATTAAAATTAAAACTTTTTCTTTTTTCTTTTGAAGAATATCACAGAAAGATCCTAACCAACTATAACTTTAACCCTTACAAACTAACTTTCCTAGAAAAATTGAAGACAAAAAAGAAAGAAATTTCTTTGAACAAGCTAAATCTTTTCAGAAAACATGTATGTCCAAGCTCTCTTATCCTTCACATTCACACTCCAATGACCAAGTAAGTACCATGAAAGTACAATTGAAGTAATGATAGTGTATGAAAGGGAAGGAATAGTCAAACAACATGGCTCAAAAAGTTAGAGGAAAAAAACCACTCCCTACAATTTCTTGGCAACTTATTCTTTAACTTGTAATAGAATTACAATAAATAAAATAAAAGAAATTGTAGTAGAATCACAGAAAATTCTCTCTTTATATTCTAGAATACTCCAAACAACATTAAAATGGAAACAAATCAATACTAAATTGGTCCAAGGGAAACCCCTTGAAAGTATTGAGAAAATTTTCCAATTTTTTTTTCTTGTTCTGTTTCCCAATGCCTTCAACTTCACACCAAACCTATGTGGATCTCAATGCCCTTTCTTCCTTTATCCCTACAATTAATCAAAGAAACTATGGAATCAGCATTTTTTCCACACCATCAGATTGCCTTCCAATTTGCATCAGAATGCAGCAGCAGAGGCCTCAACCAGCAGCCACTAGCCCTCCGAATCTTGGGAAGACCATTCTTGGCCTTACATTTCAAGCAGTTTTGGCCTTGTTCATTAGCACACCAAATTCATCTCCTCCACTTTTGACACATCTTTTTGGTGCTGCTGTGTTGATTAGCTTTGCAGTTTCATTTGCAAGTCTTTTCCTTCAAAATGTGTTCCCGAGACTCGCACGTTTGTTCGAAAAGATCGGTGCCCTTTTCGCTGCAATTGGTGTGTGCATCATATCAAGTCTTCTTCTTGTTCATCAGAACTTTGCTTGGATCTGTTGGTTGGCTTGTGCCTTCTCCTTGATTGTCTTTGTTCTATCATTCAAGTGA

Coding sequence (CDS)

ATGCCTTCAACTTCACACCAAACCTATGTGGATCTCAATGCCCTTTCTTCCTTTATCCCTACAATTAATCAAAGAAACTATGGAATCAGCATTTTTTCCACACCATCAGATTGCCTTCCAATTTGCATCAGAATGCAGCAGCAGAGGCCTCAACCAGCAGCCACTAGCCCTCCGAATCTTGGGAAGACCATTCTTGGCCTTACATTTCAAGCAGTTTTGGCCTTGTTCATTAGCACACCAAATTCATCTCCTCCACTTTTGACACATCTTTTTGGTGCTGCTGTGTTGATTAGCTTTGCAGTTTCATTTGCAAGTCTTTTCCTTCAAAATGTGTTCCCGAGACTCGCACGTTTGTTCGAAAAGATCGGTGCCCTTTTCGCTGCAATTGGTGTGTGCATCATATCAAGTCTTCTTCTTGTTCATCAGAACTTTGCTTGGATCTGTTGGTTGGCTTGTGCCTTCTCCTTGATTGTCTTTGTTCTATCATTCAAGTGA

Protein sequence

MPSTSHQTYVDLNALSSFIPTINQRNYGISIFSTPSDCLPICIRMQQQRPQPAATSPPNLGKTILGLTFQAVLALFISTPNSSPPLLTHLFGAAVLISFAVSFASLFLQNVFPRLARLFEKIGALFAAIGVCIISSLLLVHQNFAWICWLACAFSLIVFVLSFK
Homology
BLAST of Tan0019615 vs. NCBI nr
Match: KGN49808.1 (hypothetical protein Csa_004650 [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 2.3e-52
Identity = 115/165 (69.70%), Postives = 130/165 (78.79%), Query Frame = 0

Query: 1   MPSTSHQTYVDLNALSSFIPTINQRNYGISIFSTPSDCLPICIRMQQQRPQPAATSPPNL 60
           M STSHQT +D++A SSFI TI+QRNYG+    TPS+CLP+ IRMQQ  PQ  A S   L
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQS-PQATADSSQKL 60

Query: 61  GKTILGLTFQAVLALFIST-PNSSPPLLTHLFGAAVLISFAVSFASLFLQNVFPRLARLF 120
           GK IL L+FQAVLALFIS+ P S PPLL H F AAV ISFAVSFA+LFL N FPR A LF
Sbjct: 61  GKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLF 120

Query: 121 EKIGALFAAIGVCIISSLLLVHQNFAWICWLACAFSLIVFVLSFK 165
           EK+GALF+A GVC I+S LLVHQNFAWICW+AC FS+IVF LSFK
Sbjct: 121 EKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

BLAST of Tan0019615 vs. NCBI nr
Match: KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 6.7e-44
Identity = 104/153 (67.97%), Postives = 121/153 (79.08%), Query Frame = 0

Query: 12  LNALSSFIPTINQRNYGISIFSTPSDCLPICIRMQQQRPQPAATSPPNLGKTILGLTFQA 71
           +N L SFI  IN+RN  I       + LPICI MQ+  P  ++ +  N+GKTILGLTFQA
Sbjct: 1   MNELYSFITAINERNPEI-------NSLPICITMQRPSPANSSKTENNVGKTILGLTFQA 60

Query: 72  VLALFISTPNSSPPLLTHLFGAAVLISFAVSFASLFLQNVFPRLARLFEKIGALFAAIGV 131
           VLALFI++PNSSPPLLTHLF AAVLISFAVSFA +FLQN FPR+A LFEKIGAL AAIGV
Sbjct: 61  VLALFITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGV 120

Query: 132 CIISSLLLVHQNFAWICWLACAFSLIVFVLSFK 165
           CI++S LL+HQNFAWI WLA  FSL+ FVLSF+
Sbjct: 121 CIVAS-LLIHQNFAWISWLASGFSLMAFVLSFR 145

BLAST of Tan0019615 vs. NCBI nr
Match: KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 4.3e-43
Identity = 104/164 (63.41%), Postives = 125/164 (76.22%), Query Frame = 0

Query: 1   MPSTSHQTYVDLNALSSFIPTINQRNYGISIFSTPSDCLPICIRMQQQRPQPAATSPPNL 60
           M S+S Q  +D+N L S I +IN+RN  I       + LPICI MQ   P  ++ +  N+
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEI-------NGLPICIIMQTASPANSSKTENNV 60

Query: 61  GKTILGLTFQAVLALFISTPNSSPPLLTHLFGAAVLISFAVSFASLFLQNVFPRLARLFE 120
           G TILGLTFQAVLALFI++  SSPPLLTHLFGAAVLISFAVSF  +FLQ+ FPR+A LFE
Sbjct: 61  GTTILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFE 120

Query: 121 KIGALFAAIGVCIISSLLLVHQNFAWICWLACAFSLIVFVLSFK 165
           KIGAL AAIGVCI++S LL+HQNFAWI WLAC FSL+ F+LSF+
Sbjct: 121 KIGALIAAIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156

BLAST of Tan0019615 vs. NCBI nr
Match: XP_022146444.1 (uncharacterized protein LOC111015658 [Momordica charantia])

HSP 1 Score: 155.6 bits (392), Expect = 3.7e-34
Identity = 91/127 (71.65%), Postives = 98/127 (77.17%), Query Frame = 0

Query: 1   MPSTSHQTYVDLNALSSFIPTINQRNYGISIF------STPSDCLPICIRMQQQRPQPAA 60
           M ST  QT VD+NALSSFI  IN+RN GIS F      STPSDCLPICIRM  QRP PA 
Sbjct: 1   MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRM--QRPPPAK 60

Query: 61  TSPPNLGKTILGLTFQAVLALFISTPNSSPPLLTHLFGAAVLISFAVSFASLFLQNVFPR 120
           +S  +LGKTILGLTFQAVLALFIS P+S P L T LFGAAVLISFAVSFA LFLQ  +PR
Sbjct: 61  SS-QSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYPR 120

Query: 121 LARLFEK 122
           +A LFEK
Sbjct: 121 MALLFEK 124

BLAST of Tan0019615 vs. NCBI nr
Match: KAG6579132.1 (hypothetical protein SDJN03_23580, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.5 bits (389), Expect = 8.2e-34
Identity = 85/132 (64.39%), Postives = 105/132 (79.55%), Query Frame = 0

Query: 32  FSTPSDCLPICIRMQQQRPQPAATSPPNLGKTILGLTFQAVLALFISTPNSSPPLLTHLF 91
           FSTP DCLPI  R ++QR +P      N+GK I+GLT QA+LA+FIS+P+SSPPLL  LF
Sbjct: 3   FSTPRDCLPIW-RAREQRLEP-DKGHSNVGKAIIGLTSQALLAMFISSPSSSPPLLRVLF 62

Query: 92  GAAVLISFAVSFASLFLQNVFPRLARLFEKIGALFAAIGVCIISSLLLVHQNFAWICWLA 151
           GA + ISF +SFA +FL+N FP+ ARLFEK+GALFAAIGV II+S LL+H+N+AWI  LA
Sbjct: 63  GATMFISFLLSFAGIFLRNAFPKAARLFEKLGALFAAIGVSIIASFLLMHENYAWISGLA 122

Query: 152 CAFSLIVFVLSF 164
           C FSLIVF LS+
Sbjct: 123 CVFSLIVFGLSY 132

BLAST of Tan0019615 vs. ExPASy TrEMBL
Match: A0A0A0KJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.1e-52
Identity = 115/165 (69.70%), Postives = 130/165 (78.79%), Query Frame = 0

Query: 1   MPSTSHQTYVDLNALSSFIPTINQRNYGISIFSTPSDCLPICIRMQQQRPQPAATSPPNL 60
           M STSHQT +D++A SSFI TI+QRNYG+    TPS+CLP+ IRMQQ  PQ  A S   L
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQS-PQATADSSQKL 60

Query: 61  GKTILGLTFQAVLALFIST-PNSSPPLLTHLFGAAVLISFAVSFASLFLQNVFPRLARLF 120
           GK IL L+FQAVLALFIS+ P S PPLL H F AAV ISFAVSFA+LFL N FPR A LF
Sbjct: 61  GKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLF 120

Query: 121 EKIGALFAAIGVCIISSLLLVHQNFAWICWLACAFSLIVFVLSFK 165
           EK+GALF+A GVC I+S LLVHQNFAWICW+AC FS+IVF LSFK
Sbjct: 121 EKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

BLAST of Tan0019615 vs. ExPASy TrEMBL
Match: A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 3.2e-44
Identity = 104/153 (67.97%), Postives = 121/153 (79.08%), Query Frame = 0

Query: 12  LNALSSFIPTINQRNYGISIFSTPSDCLPICIRMQQQRPQPAATSPPNLGKTILGLTFQA 71
           +N L SFI  IN+RN  I       + LPICI MQ+  P  ++ +  N+GKTILGLTFQA
Sbjct: 1   MNELYSFITAINERNPEI-------NSLPICITMQRPSPANSSKTENNVGKTILGLTFQA 60

Query: 72  VLALFISTPNSSPPLLTHLFGAAVLISFAVSFASLFLQNVFPRLARLFEKIGALFAAIGV 131
           VLALFI++PNSSPPLLTHLF AAVLISFAVSFA +FLQN FPR+A LFEKIGAL AAIGV
Sbjct: 61  VLALFITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGV 120

Query: 132 CIISSLLLVHQNFAWICWLACAFSLIVFVLSFK 165
           CI++S LL+HQNFAWI WLA  FSL+ FVLSF+
Sbjct: 121 CIVAS-LLIHQNFAWISWLASGFSLMAFVLSFR 145

BLAST of Tan0019615 vs. ExPASy TrEMBL
Match: A0A0A0KJN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 2.1e-43
Identity = 104/164 (63.41%), Postives = 125/164 (76.22%), Query Frame = 0

Query: 1   MPSTSHQTYVDLNALSSFIPTINQRNYGISIFSTPSDCLPICIRMQQQRPQPAATSPPNL 60
           M S+S Q  +D+N L S I +IN+RN  I       + LPICI MQ   P  ++ +  N+
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEI-------NGLPICIIMQTASPANSSKTENNV 60

Query: 61  GKTILGLTFQAVLALFISTPNSSPPLLTHLFGAAVLISFAVSFASLFLQNVFPRLARLFE 120
           G TILGLTFQAVLALFI++  SSPPLLTHLFGAAVLISFAVSF  +FLQ+ FPR+A LFE
Sbjct: 61  GTTILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFE 120

Query: 121 KIGALFAAIGVCIISSLLLVHQNFAWICWLACAFSLIVFVLSFK 165
           KIGAL AAIGVCI++S LL+HQNFAWI WLAC FSL+ F+LSF+
Sbjct: 121 KIGALIAAIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156

BLAST of Tan0019615 vs. ExPASy TrEMBL
Match: A0A6J1CY58 (uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015658 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.8e-34
Identity = 91/127 (71.65%), Postives = 98/127 (77.17%), Query Frame = 0

Query: 1   MPSTSHQTYVDLNALSSFIPTINQRNYGISIF------STPSDCLPICIRMQQQRPQPAA 60
           M ST  QT VD+NALSSFI  IN+RN GIS F      STPSDCLPICIRM  QRP PA 
Sbjct: 1   MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRM--QRPPPAK 60

Query: 61  TSPPNLGKTILGLTFQAVLALFISTPNSSPPLLTHLFGAAVLISFAVSFASLFLQNVFPR 120
           +S  +LGKTILGLTFQAVLALFIS P+S P L T LFGAAVLISFAVSFA LFLQ  +PR
Sbjct: 61  SS-QSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYPR 120

Query: 121 LARLFEK 122
           +A LFEK
Sbjct: 121 MALLFEK 124

BLAST of Tan0019615 vs. ExPASy TrEMBL
Match: A0A0A0KQ03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.5e-28
Identity = 79/163 (48.47%), Postives = 103/163 (63.19%), Query Frame = 0

Query: 6   HQTYVDLNALSSFIPTINQRNYGISIFS---TPSDCLPICIRMQQQRPQPAATSPPNLGK 65
           H+  +D+N L+S I  +  RN GIS  +     SDCLPI I+MQ    +P+  + P  G 
Sbjct: 7   HEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQ----RPSPVNSPQFGN 66

Query: 66  TILGLTFQAVLALFIS-TPNSSPPLLTHLFGAAVLISFAVSFASLFLQNVFPRLARLFEK 125
           T L LTFQA++ LF+S  P+SS PL + LF A +L SF  S+  + LQ  FP+ A+L + 
Sbjct: 67  TFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLLQT 126

Query: 126 IGALFAAIGVCIISSLLLVHQNFAWICWLACAFSLIVFVLSFK 165
            GALFAAIG CII SLLL + NF WICWLA    L  F++SFK
Sbjct: 127 FGALFAAIGTCIIGSLLL-YPNFTWICWLAAGLILPAFIISFK 164

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN49808.12.3e-5269.70hypothetical protein Csa_004650 [Cucumis sativus][more]
KAA0050246.16.7e-4467.97putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... [more]
KGN49803.14.3e-4363.41hypothetical protein Csa_004681 [Cucumis sativus][more]
XP_022146444.13.7e-3471.65uncharacterized protein LOC111015658 [Momordica charantia][more]
KAG6579132.18.2e-3464.39hypothetical protein SDJN03_23580, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0KJP21.1e-5269.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1[more]
A0A5A7U7U13.2e-4467.97Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... [more]
A0A0A0KJN82.1e-4363.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1[more]
A0A6J1CY581.8e-3471.65uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A0A0KQ032.5e-2848.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0019615.1Tan0019615.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane