Tan0019613 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTCGTTTTAACTTCTCTTTCGTCGATTCCTCTTTCTTTCTCCCTCTAAAACTGGCGCATAGAATGAGTTCGATTACAAAGAAACACGGAATATCATGGAAGCAATCGACGAGAAGAACGGTTATGCGATCGAGGTACGGTTCTCGGATCCTCAGAGCTCGAAGAATCCACAAAAATGGCGGAAAAGCGTGCTCCTCAGACGTATCGGCGAAGCTTGAGGCGCTGCAGAGCCTCATTCCGACTCGGAACGACGGCAAAGGACATCAACGGAGAGCGGAGGAGTTGTTTCAGGAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTGTTCGTTTTGCAGAGGCTGATCGAGTTTTACGGATCCGGTGAGAGAGAAAATTCCGTAACATCGTAGTTTAATTCTTCTCGAATCAAGGAAAAGGAAATTGAGAAGAGGAGACGGTCGGAATGATCGATAATTTTCTGGAATTTTCGTTTTGCATGCGGTGTCTGGTTGGAGAGAAAGTGGAG GTCGTTTTAACTTCTCTTTCGTCGATTCCTCTTTCTTTCTCCCTCTAAAACTGGCGCATAGAATGAGTTCGATTACAAAGAAACACGGAATATCATGGAAGCAATCGACGAGAAGAACGGTTATGCGATCGAGGTACGGTTCTCGGATCCTCAGAGCTCGAAGAATCCACAAAAATGGCGGAAAAGCGTGCTCCTCAGACGTATCGGCGAAGCTTGAGGCGCTGCAGAGCCTCATTCCGACTCGGAACGACGGCAAAGGACATCAACGGAGAGCGGAGGAGTTGTTTCAGGAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTGTTCGTTTTGCAGAGGCTGATCGAGTTTTACGGATCCGGTGAGAGAGAAAATTCCGTAACATCGTAGTTTAATTCTTCTCGAATCAAGGAAAAGGAAATTGAGAAGAGGAGACGGTCGGAATGATCGATAATTTTCTGGAATTTTCGTTTTGCATGCGGTGTCTGGTTGGAGAGAAAGTGGAG ATGAGTTCGATTACAAAGAAACACGGAATATCATGGAAGCAATCGACGAGAAGAACGGTTATGCGATCGAGGTACGGTTCTCGGATCCTCAGAGCTCGAAGAATCCACAAAAATGGCGGAAAAGCGTGCTCCTCAGACGTATCGGCGAAGCTTGAGGCGCTGCAGAGCCTCATTCCGACTCGGAACGACGGCAAAGGACATCAACGGAGAGCGGAGGAGTTGTTTCAGGAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTGTTCGTTTTGCAGAGGCTGATCGAGTTTTACGGATCCGGTGAGAGAGAAAATTCCGTAACATCGTAG MSSITKKHGISWKQSTRRTVMRSRYGSRILRARRIHKNGGKACSSDVSAKLEALQSLIPTRNDGKGHQRRAEELFQETADYIVLLKNQVFVLQRLIEFYGSGERENSVTS Homology
BLAST of Tan0019613 vs. NCBI nr
Match: KAG6607102.1 (hypothetical protein SDJN03_00444, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 178.7 bits (452), Expect = 2.7e-41 Identity = 88/101 (87.13%), Postives = 98/101 (97.03%), Query Frame = 0
BLAST of Tan0019613 vs. NCBI nr
Match: KAG7036793.1 (hypothetical protein SDJN02_00413, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 161.4 bits (407), Expect = 4.5e-36 Identity = 82/101 (81.19%), Postives = 92/101 (91.09%), Query Frame = 0
BLAST of Tan0019613 vs. NCBI nr
Match: TYK04615.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa]) HSP 1 Score: 141.7 bits (356), Expect = 3.7e-30 Identity = 77/110 (70.00%), Postives = 93/110 (84.55%), Query Frame = 0
BLAST of Tan0019613 vs. NCBI nr
Match: KAA0056655.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa]) HSP 1 Score: 139.8 bits (351), Expect = 1.4e-29 Identity = 76/110 (69.09%), Postives = 92/110 (83.64%), Query Frame = 0
BLAST of Tan0019613 vs. NCBI nr
Match: PQQ13412.1 (uncharacterized protein Pyn_32000 [Prunus yedoensis var. nudiflora]) HSP 1 Score: 90.1 bits (222), Expect = 1.3e-14 Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 0
BLAST of Tan0019613 vs. ExPASy TrEMBL
Match: A0A5D3BZU8 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G00200 PE=4 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 1.8e-30 Identity = 77/110 (70.00%), Postives = 93/110 (84.55%), Query Frame = 0
BLAST of Tan0019613 vs. ExPASy TrEMBL
Match: A0A5A7UT08 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001870 PE=4 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 6.8e-30 Identity = 76/110 (69.09%), Postives = 92/110 (83.64%), Query Frame = 0
BLAST of Tan0019613 vs. ExPASy TrEMBL
Match: A0A314YX88 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_32000 PE=4 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 6.1e-15 Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 0
BLAST of Tan0019613 vs. ExPASy TrEMBL
Match: A0A6J5UGL2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23457 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14 Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 0
BLAST of Tan0019613 vs. ExPASy TrEMBL
Match: A0A067JTG6 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_19930 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14 Identity = 57/103 (55.34%), Postives = 69/103 (66.99%), Query Frame = 0
BLAST of Tan0019613 vs. TAIR 10
Match: AT5G39240.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29370.1); Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 55.8 bits (133), Expect = 2.5e-08 Identity = 38/96 (39.58%), Postives = 51/96 (53.12%), Query Frame = 0
BLAST of Tan0019613 vs. TAIR 10
Match: AT3G29370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 52.4 bits (124), Expect = 2.7e-07 Identity = 39/88 (44.32%), Postives = 46/88 (52.27%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|