Tan0019540 (gene) Snake gourd v1

Overview


Name	Tan0019540
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Hydroxyproline-rich glycoprotein family protein
Location	LG04: 24161229 .. 24161857 (-)
RNA-Seq Expression	Tan0019540
Synteny	Tan0019540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTAGTCTTCAAATTTTGATTCAATATGTTCATCCAAACGCGGCCTTGTTATGCTCCAATGATCCTCATCTTGTTCTTGATTCTTTCAATCAATGTGGTAGCCATCCATGGCTTGATCCCTTCCGAGAAGCTCGACGAGCCACCCGGCAGCAACGATTCGAGCATCAAGTGTACACCGTGCACCCGTTATCCACCACCGCCTCCTCCACCACCTCCACCGAAGAAACCATCATCGGCGTACTGCCCTCCGCCTCCATCTCCTCCGTCTTCTTTCATATATGTACTTGGCCCGCCGGGAAACTTGTATCCCATTGACCAGGACTTCGCCAGTGCCCGGAGTAGGATGGTTGTGGAGCTGCCGGTGGTTGCTCTCTTGGGGTTGATTGGTTTTATTGCTTTGTGGCGATTTTAATGGAGTTTGAGTGATGGAAAGTTTAATGAATTGACGAAGATAATAAACTCGAAATGAAGGTGGTAGGTTCGAATCTTCTCTTATTATTATTTTTTTTTTTTTTTGTATTCTTGGTATTATTGACTAAAAGTTTTTTAATGATGAGTTTTTAGTCATGGTGTAATTCATCACATTAGGAAAATCTAATAAATGTATATAAATTTGGATTCTGGATTA

mRNA sequence

TTTTAGTCTTCAAATTTTGATTCAATATGTTCATCCAAACGCGGCCTTGTTATGCTCCAATGATCCTCATCTTGTTCTTGATTCTTTCAATCAATGTGGTAGCCATCCATGGCTTGATCCCTTCCGAGAAGCTCGACGAGCCACCCGGCAGCAACGATTCGAGCATCAAGTGTACACCGTGCACCCGTTATCCACCACCGCCTCCTCCACCACCTCCACCGAAGAAACCATCATCGGCGTACTGCCCTCCGCCTCCATCTCCTCCGTCTTCTTTCATATATGTACTTGGCCCGCCGGGAAACTTGTATCCCATTGACCAGGACTTCGCCAGTGCCCGGAGTAGGATGGTTGTGGAGCTGCCGGTGGTTGCTCTCTTGGGGTTGATTGGTTTTATTGCTTTGTGGCGATTTTAATGGAGTTTGAGTGATGGAAAGTTTAATGAATTGACGAAGATAATAAACTCGAAATGAAGGTGGTAGGTTCGAATCTTCTCTTATTATTATTTTTTTTTTTTTTTGTATTCTTGGTATTATTGACTAAAAGTTTTTTAATGATGAGTTTTTAGTCATGGTGTAATTCATCACATTAGGAAAATCTAATAAATGTATATAAATTTGGATTCTGGATTA

Coding sequence (CDS)

ATGTTCATCCAAACGCGGCCTTGTTATGCTCCAATGATCCTCATCTTGTTCTTGATTCTTTCAATCAATGTGGTAGCCATCCATGGCTTGATCCCTTCCGAGAAGCTCGACGAGCCACCCGGCAGCAACGATTCGAGCATCAAGTGTACACCGTGCACCCGTTATCCACCACCGCCTCCTCCACCACCTCCACCGAAGAAACCATCATCGGCGTACTGCCCTCCGCCTCCATCTCCTCCGTCTTCTTTCATATATGTACTTGGCCCGCCGGGAAACTTGTATCCCATTGACCAGGACTTCGCCAGTGCCCGGAGTAGGATGGTTGTGGAGCTGCCGGTGGTTGCTCTCTTGGGGTTGATTGGTTTTATTGCTTTGTGGCGATTTTAA

Protein sequence

MFIQTRPCYAPMILILFLILSINVVAIHGLIPSEKLDEPPGSNDSSIKCTPCTRYPPPPPPPPPPKKPSSAYCPPPPSPPSSFIYVLGPPGNLYPIDQDFASARSRMVVELPVVALLGLIGFIALWRF

Homology

[Close]

BLAST of Tan0019540 vs. NCBI nr
Match: XP_022155381.1 (acrosin-like [Momordica charantia])

HSP 1 Score: 166.0 bits (419), Expect = 2.1e-37
Identity = 93/126 (73.81%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 1   MFIQTRPCYAPMILILFLILSINVVAIHGLIPSEKLDEPPGSNDSSIKCTPCTRYPPPPP 60
           M+IQT+      IL L LILSINVV IHGLI S KLD   G  DS++KCTPCTRY PPPP
Sbjct: 1   MWIQTQ------ILNLLLILSINVVTIHGLISSNKLDGSTG-GDSTVKCTPCTRYNPPPP 60

Query: 61  PPPPPKKPSSAYCPPPPSPPSSFIYVLGPPGNLYPIDQDFASARSRMVVELPVVALLGLI 120
           PPPPPKKP S+YCPPPP PPSSFIY+LGPPGNLYPI QDFA  R R+ VELPVVALLGL+
Sbjct: 61  PPPPPKKPPSSYCPPPPPPPSSFIYMLGPPGNLYPIGQDFAGGRRRVAVELPVVALLGLM 119

Query: 121 GFIALW 127
           GFIA+W
Sbjct: 121 GFIAVW 119

[Close]

BLAST of Tan0019540 vs. NCBI nr
Match: KAG6600825.1 (hypothetical protein SDJN03_06058, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.5 bits (389), Expect = 6.4e-34
Identity = 86/126 (68.25%), Postives = 96/126 (76.19%), Query Frame = 0


Query: 1   MFIQTRPCYAPMILILFLILSINVVAIHGLIPSEKLDEPPGSNDSSIKCTPCTRYPPPPP 60
           M IQTRP YA  I   F +LSINVV  HG + S+KLDE  G +D  +KCTPCT    PPP
Sbjct: 1   MCIQTRPRYALFIFSFFFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTH--NPPP 60

Query: 61  PPPPPKKPSSAYCPPPPSPPSSFIYVLGPPGNLYPIDQDFASA-RSRMVVELPVVALLGL 120
           PPPPPKKPS AYCPPPP PPSSFIY+LGPPGNLYPID+DFA A R R+VVEL  VAL GL
Sbjct: 61  PPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGL 120

Query: 121 IGFIAL 126
           IGF+ +
Sbjct: 121 IGFLGV 124

[Close]

BLAST of Tan0019540 vs. NCBI nr
Match: KAG7031461.1 (hypothetical protein SDJN02_05501, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.1 bits (383), Expect = 3.2e-33
Identity = 85/126 (67.46%), Postives = 95/126 (75.40%), Query Frame = 0


Query: 1   MFIQTRPCYAPMILILFLILSINVVAIHGLIPSEKLDEPPGSNDSSIKCTPCTRYPPPPP 60
           M IQTRP YA  I     +LSINVV  HG + S+KLDE  G +D  +KCTPCT    PPP
Sbjct: 1   MCIQTRPRYALFIFSFLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTH--NPPP 60

Query: 61  PPPPPKKPSSAYCPPPPSPPSSFIYVLGPPGNLYPIDQDFASA-RSRMVVELPVVALLGL 120
           PPPPPKKPS AYCPPPP PPSSFIY+LGPPGNLYPID+DFA A R R+VVEL  VAL GL
Sbjct: 61  PPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGL 120

Query: 121 IGFIAL 126
           IGF+ +
Sbjct: 121 IGFLGV 124

[Close]

BLAST of Tan0019540 vs. NCBI nr
Match: KGN50831.1 (hypothetical protein Csa_004723 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-32
Identity = 87/126 (69.05%), Postives = 96/126 (76.19%), Query Frame = 0


Query: 1   MFIQTRPCYAPMILILFLILSINVVAIHGLIPSEKLDEPPGSNDSSIKCTPCTRYPPPPP 60
           M IQ  P Y+ +IL  FLILSIN+  IHG I S+KLDEP   +DSS+KCTPCTRY   PP
Sbjct: 1   MCIQPHPFYSLLILHFFLILSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRY--SPP 60

Query: 61  PPPPPKKPSSAYCPPPPSPPSSFIYVLGPPGNLYPIDQDFASARSRMV-VELPVVALLGL 120
           PPPPPKKP   YCPPPP PPSSFIY+LGPP NLYPI+ DFASA  R V +ELPVVA  GL
Sbjct: 61  PPPPPKKPPPIYCPPPPLPPSSFIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGL 120

Query: 121 IGFIAL 126
           IG IAL
Sbjct: 121 IGLIAL 124

[Close]

BLAST of Tan0019540 vs. NCBI nr
Match: XP_023546806.1 (formin-like protein 20 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.8 bits (377), Expect = 1.6e-32
Identity = 86/127 (67.72%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 1   MFIQTRPCYAPMILILFL-ILSINVVAIHGLIPSEKLDEPPGSNDSSIKCTPCTRYPPPP 60
           M IQTRP YA  I   F+  LSINVV  HG + S+KLDE  G +D S+KCTPCT    PP
Sbjct: 1   MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTH--NPP 60

Query: 61  PPPPPPKKPSSAYCPPPPSPPSSFIYVLGPPGNLYPIDQDFASA-RSRMVVELPVVALLG 120
           PPPPPPKKPS AYCPPPP PPSSFIY+LGPPGNLYPID+DFA A R R+ VEL  VAL G
Sbjct: 61  PPPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFG 120

Query: 121 LIGFIAL 126
           LIGF+ +
Sbjct: 121 LIGFLGV 125

[Close]

BLAST of Tan0019540 vs. ExPASy TrEMBL
Match: A0A6J1DRJ1 (acrosin-like OS=Momordica charantia OX=3673 GN=LOC111022525 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.0e-37
Identity = 93/126 (73.81%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 1   MFIQTRPCYAPMILILFLILSINVVAIHGLIPSEKLDEPPGSNDSSIKCTPCTRYPPPPP 60
           M+IQT+      IL L LILSINVV IHGLI S KLD   G  DS++KCTPCTRY PPPP
Sbjct: 1   MWIQTQ------ILNLLLILSINVVTIHGLISSNKLDGSTG-GDSTVKCTPCTRYNPPPP 60

Query: 61  PPPPPKKPSSAYCPPPPSPPSSFIYVLGPPGNLYPIDQDFASARSRMVVELPVVALLGLI 120
           PPPPPKKP S+YCPPPP PPSSFIY+LGPPGNLYPI QDFA  R R+ VELPVVALLGL+
Sbjct: 61  PPPPPKKPPSSYCPPPPPPPSSFIYMLGPPGNLYPIGQDFAGGRRRVAVELPVVALLGLM 119

Query: 121 GFIALW 127
           GFIA+W
Sbjct: 121 GFIAVW 119

[Close]

BLAST of Tan0019540 vs. ExPASy TrEMBL
Match: A0A0A0KSV7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.8e-33
Identity = 87/126 (69.05%), Postives = 96/126 (76.19%), Query Frame = 0


Query: 1   MFIQTRPCYAPMILILFLILSINVVAIHGLIPSEKLDEPPGSNDSSIKCTPCTRYPPPPP 60
           M IQ  P Y+ +IL  FLILSIN+  IHG I S+KLDEP   +DSS+KCTPCTRY   PP
Sbjct: 1   MCIQPHPFYSLLILHFFLILSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRY--SPP 60

Query: 61  PPPPPKKPSSAYCPPPPSPPSSFIYVLGPPGNLYPIDQDFASARSRMV-VELPVVALLGL 120
           PPPPPKKP   YCPPPP PPSSFIY+LGPP NLYPI+ DFASA  R V +ELPVVA  GL
Sbjct: 61  PPPPPKKPPPIYCPPPPLPPSSFIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGL 120

Query: 121 IGFIAL 126
           IG IAL
Sbjct: 121 IGLIAL 124

[Close]

BLAST of Tan0019540 vs. ExPASy TrEMBL
Match: A0A6J1FVH5 (probable glycosyltransferase 4 OS=Cucurbita moschata OX=3662 GN=LOC111447243 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 9.9e-33
Identity = 86/127 (67.72%), Postives = 95/127 (74.80%), Query Frame = 0


Query: 1   MFIQTRPCYAPMIL-ILFLILSINVVAIHGLIPSEKLDEPPGSNDSSIKCTPCTRYPPPP 60
           M IQTRP YA  IL   F  LS NVV  HG + S+KLDE  G +D S+KCTPCT    PP
Sbjct: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTH--NPP 60

Query: 61  PPPPPPKKPSSAYCPPPPSPPSSFIYVLGPPGNLYPIDQDFASA-RSRMVVELPVVALLG 120
           PPPPPPKKPS AYCPPPP PPSSFIY+LGPPGNLYPID+DFA A R R+ VEL  VAL G
Sbjct: 61  PPPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFG 120

Query: 121 LIGFIAL 126
           LIGF+ +
Sbjct: 121 LIGFLGV 125

[Close]

BLAST of Tan0019540 vs. ExPASy TrEMBL
Match: A0A4S4DUT5 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_003215 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 3.1e-18
Identity = 66/131 (50.38%), Postives = 82/131 (62.60%), Query Frame = 0


Query: 5   TRPCYAP-MILILFLILSINVVAIHGLIPSEKLDEP--PGSNDSSIKCT----PCTRYPP 64
           T P + P  +L++F +++     IHGLIP  KLD+    G  DS IKCT    PC + PP
Sbjct: 4   TNPQFDPSKLLLMFFVITTIATPIHGLIP-RKLDDTTVTGPPDSGIKCTSCCNPCNQSPP 63

Query: 65  PPPPPPP--PKKPSSAYCPPPPSPPSSFIYVLGPPGNLYPIDQDFASARSRMVVELPVVA 124
           PPPPPPP  PK P + YCPPPPSP  SFIYV G PGNLYPID  F+SA     V +P++ 
Sbjct: 64  PPPPPPPPTPKLPPTQYCPPPPSP--SFIYVTGQPGNLYPIDPYFSSAGRNFAVAMPLLM 123

Query: 125 LLGLIGFIALW 127
              L+G +A W
Sbjct: 124 GCALVGLLAFW 131

[Close]

BLAST of Tan0019540 vs. ExPASy TrEMBL
Match: A5B8N9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g04830 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.9e-18
Identity = 61/125 (48.80%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 13  ILILFLILSINVVAIHGLIPSEKLDEPP--GSNDSSIKC-------TPCTRYPPPPP--- 72
           +L +FL+++     ++G   S KLDE P  GS D+ +KC        PC + PPPPP   
Sbjct: 13  LLTVFLVVAAIATPVNG-SNSRKLDESPASGSPDAGVKCGGCSSCQNPCNQSPPPPPPPS 72

Query: 73  PPPPPKKPSSAYCPPPPSPPSSFIYVLGPPGNLYPIDQDFASARSRMVVELPVVALLGLI 126
           PPPPPKKP + YCPPPP PP+SF+YV GPPG LYPIDQD+  A    +V LP++A  GL+
Sbjct: 73  PPPPPKKPRAPYCPPPPPPPASFLYVTGPPGTLYPIDQDYGGAGRNFMVGLPILAGCGLL 132

[Close]

BLAST of Tan0019540 vs. TAIR 10
Match: AT1G70990.1 (proline-rich family protein )

HSP 1 Score: 68.9 bits (167), Expect = 3.3e-12
Identity = 47/102 (46.08%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 33  SEKLDEPPGSNDSSIKCTPCTRYPPPPPPPPPPKKPSSAYCPPP------------PSPP 92
           + KL+E P      IKCTPC +  PPP PPPP   P S  CPPP            P PP
Sbjct: 74  NRKLEEDP------IKCTPCLQNIPPPSPPPPSPPPPSQACPPPPLPPSPPKKSYCPPPP 133

Query: 93  SSFIYVLGPPGNLYPIDQDFASARSRMVVELPVVALLGLIGF 123
           S++IY+ GPPG LYPIDQ F +A ++      VV + GLI F
Sbjct: 134 STYIYMTGPPGELYPIDQQFGAAVTK---SFTVVKISGLIAF 166

[Close]

BLAST of Tan0019540 vs. TAIR 10
Match: AT1G23040.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 68.6 bits (166), Expect = 4.3e-12
Identity = 48/114 (42.11%), Postives = 66/114 (57.89%), Query Frame = 0


Query: 31  IPSEKLDEPPGSNDSSIKCTP-CTRYPPPPPP----------------PPPPKKPSSAYC 90
           + + KLDE        IKC+P C + PPPP P                PPPP K  S+YC
Sbjct: 38  LEARKLDEV-----DPIKCSPSCIQNPPPPSPPPPSPPPPACPPPPALPPPPPKKVSSYC 97

Query: 91  PPPPSPPSSFIYVLGPPGNLYPIDQDF--ASARSRMVVELPVVALLGLIGFIAL 126
           PPP  PP++F+Y+ GPPGNLYP+D+ F  A+ +S MVV+L  +   G++ F+ L
Sbjct: 98  PPP--PPANFLYITGPPGNLYPVDEQFGAAAGKSFMVVKLSGLIAFGIMAFLIL 144

[Close]

BLAST of Tan0019540 vs. TAIR 10
Match: AT1G02405.1 (proline-rich family protein )

HSP 1 Score: 44.7 bits (104), Expect = 6.6e-05
Identity = 36/98 (36.73%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 31  IPSEKLDEPPGSNDSSIKCTPCTRYPPPPPPPPPPKK---PSSAYCPPPPSPPSSFIYVL 90
           IP  +   PP  +     CTP     PPPP PPPPKK   P S   PPPP PP ++++  
Sbjct: 42  IPCLQNQPPPPPSPPPPSCTP----SPPPPSPPPPKKSSCPPSPLPPPPPPPPPNYVFTY 101

Query: 91  GPPGNLYPIDQDFASARSRMVVELPVVALLGLIGFIAL 126
            PPG+LYPI+  + +A +     +  + + G++ F+ L
Sbjct: 102 -PPGDLYPIENYYGAAVAVESFSVMKLFVFGVMVFLIL 134

The following BLAST results are available for this feature:

BLAST of Tan0019540 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0019540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155381.1	2.1e-37	73.81	acrosin-like [Momordica charantia]	[more]
KAG6600825.1	6.4e-34	68.25	hypothetical protein SDJN03_06058, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7031461.1	3.2e-33	67.46	hypothetical protein SDJN02_05501, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN50831.1	1.2e-32	69.05	hypothetical protein Csa_004723 [Cucumis sativus]	[more]
XP_023546806.1	1.6e-32	67.72	formin-like protein 20 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Tan0019540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRJ1	1.0e-37	73.81	acrosin-like OS=Momordica charantia OX=3673 GN=LOC111022525 PE=4 SV=1	[more]
A0A0A0KSV7	5.8e-33	69.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1	[more]
A0A6J1FVH5	9.9e-33	67.72	probable glycosyltransferase 4 OS=Cucurbita moschata OX=3662 GN=LOC111447243 PE=...	[more]
A0A4S4DUT5	3.1e-18	50.38	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0032...	[more]
A5B8N9	6.9e-18	48.80	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g04830 PE=4 SV=...	[more]

BLAST of Tan0019540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70990.1	3.3e-12	46.08	proline-rich family protein	[more]
AT1G23040.1	4.3e-12	42.11	hydroxyproline-rich glycoprotein family protein	[more]
AT1G02405.1	6.6e-05	36.73	proline-rich family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..74
None	No IPR available	PANTHER	PTHR35094	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2	coord: 6..126
None	No IPR available	PANTHER	PTHR35094:SF1	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2	coord: 6..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0019540.1	Tan0019540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane