Tan0019374 (gene) Snake gourd v1

Overview


Name	Tan0019374
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	precursor of CEP14
Location	LG07: 53592899 .. 53593213 (+)
RNA-Seq Expression	Tan0019374
Synteny	Tan0019374

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACCTCAATTAACAAATCCCTATTTCTCATCTTCTTCCTTCTTCTTCTTTCTTCCATTTCACCATCTTCTCAATTCAGAACCACCCTTCTCCTTCACAACAAATACAACAACAACAACCTCTTGTCGGTCGTCCTCCCCAAAGGCGACGCACCACCGTCTTCTCCCAACAATATAGGCCACGTTGTCCTCACCGACCAGAAGCTCCTCCGTAGTCGTAGCCTCATCGCTGCCCCTCATCCCCGACATTATTATTACAATAACAACAATCGCATTCTCCGCTCCGTCCCCAGCCCCGGTGCCGGCCATTAA

mRNA sequence

ATGGCTACCTCAATTAACAAATCCCTATTTCTCATCTTCTTCCTTCTTCTTCTTTCTTCCATTTCACCATCTTCTCAATTCAGAACCACCCTTCTCCTTCACAACAAATACAACAACAACAACCTCTTGTCGGTCGTCCTCCCCAAAGGCGACGCACCACCGTCTTCTCCCAACAATATAGGCCACGTTGTCCTCACCGACCAGAAGCTCCTCCGTAGTCGTAGCCTCATCGCTGCCCCTCATCCCCGACATTATTATTACAATAACAACAATCGCATTCTCCGCTCCGTCCCCAGCCCCGGTGCCGGCCATTAA

Coding sequence (CDS)

ATGGCTACCTCAATTAACAAATCCCTATTTCTCATCTTCTTCCTTCTTCTTCTTTCTTCCATTTCACCATCTTCTCAATTCAGAACCACCCTTCTCCTTCACAACAAATACAACAACAACAACCTCTTGTCGGTCGTCCTCCCCAAAGGCGACGCACCACCGTCTTCTCCCAACAATATAGGCCACGTTGTCCTCACCGACCAGAAGCTCCTCCGTAGTCGTAGCCTCATCGCTGCCCCTCATCCCCGACATTATTATTACAATAACAACAATCGCATTCTCCGCTCCGTCCCCAGCCCCGGTGCCGGCCATTAA

Protein sequence

MATSINKSLFLIFFLLLLSSISPSSQFRTTLLLHNKYNNNNLLSVVLPKGDAPPSSPNNIGHVVLTDQKLLRSRSLIAAPHPRHYYYNNNNRILRSVPSPGAGH

Homology

[Close]

BLAST of Tan0019374 vs. NCBI nr
Match: XP_015065205.1 (precursor of CEP14 [Solanum pennellii])

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-05
Identity = 44/107 (41.12%), Postives = 58/107 (54.21%), Query Frame = 0


Query: 1   MATSINKSLFLIFFLLLLSSISPSSQFRTTLLLHNKYNNNNLLSV---VLPKGDAPPSSP 60
           MA S   +  L+ F+L+L+S S S + R  L  H     +NL S+    LPKG  P S+P
Sbjct: 1   MALSRISTSILLMFVLILASFSSSMEARKLLNSHEAKKVSNLKSLYLNALPKGRVPASTP 60

Query: 61  NNIGHVVLTDQKLLRSRSLIAAPHPRHYYYNNNNRILRSVPSPGAGH 105
           +  GH   TD+KL+ +R L A            +RILRSVPSPG GH
Sbjct: 61  SKKGHSYTTDEKLI-ARHLAAV-----------DRILRSVPSPGVGH 95

[Close]

BLAST of Tan0019374 vs. NCBI nr
Match: OVA16140.1 (hypothetical protein BVC80_8927g22 [Macleaya cordata])

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-05
Identity = 50/132 (37.88%), Postives = 65/132 (49.24%), Query Frame = 0


Query: 1   MATSINKSLFLIFFLLLL----SSISPSSQFRTTLLLHNKYNNNN--------LLSVV-- 60
           MA   N S  ++FF  LL    SS+ PSS  R  LL   K  NNN        +++VV  
Sbjct: 1   MAPHQNLSTRVLFFFFLLALICSSLVPSSDARKLLLNMEKNTNNNKDMMMKKDVIAVVVP 60

Query: 61  -----------LPKGDAPPSSPNNIGHVVLT-DQKLLR--SRSLIAAPHPRHYYYNNNNR 105
                      LPKG  PPS+P+  GH ++  ++KL R  + +    P P H      +R
Sbjct: 61  SSLRDSLVLNALPKGSVPPSAPSKKGHAMININEKLFRTFATTYTTTPSPAHI-----DR 120

[Close]

BLAST of Tan0019374 vs. NCBI nr
Match: KAF7803270.1 (precursor of CEP14 [Senna tora])

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-05
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 34  HNKYNNNNLLSVVLPKGDAPPSSPNNIGHVVLTDQKLLRSRSLIAAPHPRHYYYNNNNRI 93
           H+  + ++L    LPKG  P S+P+  GH V+ DQKL+ +R LIA            +R+
Sbjct: 40  HSSNSRDSLFLTALPKGTVPSSTPSRKGHAVVVDQKLI-ARHLIAL-----------DRL 98

Query: 94  LRSVPSPGAGH 105
           LRSVPSPGAGH
Sbjct: 100 LRSVPSPGAGH 98

[Close]

BLAST of Tan0019374 vs. NCBI nr
Match: XP_027348625.1 (precursor of CEP14 [Abrus precatorius])

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-04
Identity = 41/104 (39.42%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 8   SLFLIFFLLLLSSISPSSQFRTTLL-------LHNKYNNNNLLSVVLPKGDAPPSSPNNI 67
           S +++ F+LL +S+S S + R  LL         N  + ++L    LPKG  PPSSP+  
Sbjct: 5   STWVLLFILLFASLSSSLEGRKLLLGAEKQWKKANPSSRDSLFLSALPKGTVPPSSPSKK 64

Query: 68  GHVVLTDQKLLRSRSLIAAPHPRHYYYNNNNRILRSVPSPGAGH 105
           GHVV  D+K L +R LI+           +  +LRSVPSPG GH
Sbjct: 65  GHVVEVDEK-LTARHLISI----------DRVLLRSVPSPGVGH 97

[Close]

BLAST of Tan0019374 vs. NCBI nr
Match: OIT29134.1 (hypothetical protein A4A49_16180 [Nicotiana attenuata])

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-04
Identity = 42/108 (38.89%), Postives = 55/108 (50.93%), Query Frame = 0


Query: 1   MATSINKSLFLIFFLLLLSSISPSSQFRTTLLLHNKYN----NNNLLSVVLPKGDAPPSS 60
           M  S   S  L+ F+L+L+S S S++ R  L LH         + L    LPKG  P S+
Sbjct: 1   MTVSKISSSILLMFILVLASFSSSTEARKLLKLHEVKKTPSLEDRLYLNALPKGRVPAST 60

Query: 61  PNNIGHVVLTDQKLLRSRSLIAAPHPRHYYYNNNNRILRSVPSPGAGH 105
           P+  GH    D+KL+ +R L A            +RILRSVPSPG GH
Sbjct: 61  PSKKGHSYTIDEKLI-ARHLAAV-----------DRILRSVPSPGVGH 96

[Close]

BLAST of Tan0019374 vs. ExPASy TrEMBL
Match: A0A200R0F1 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8927g22 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 50/132 (37.88%), Postives = 65/132 (49.24%), Query Frame = 0


Query: 1   MATSINKSLFLIFFLLLL----SSISPSSQFRTTLLLHNKYNNNN--------LLSVV-- 60
           MA   N S  ++FF  LL    SS+ PSS  R  LL   K  NNN        +++VV  
Sbjct: 1   MAPHQNLSTRVLFFFFLLALICSSLVPSSDARKLLLNMEKNTNNNKDMMMKKDVIAVVVP 60

Query: 61  -----------LPKGDAPPSSPNNIGHVVLT-DQKLLR--SRSLIAAPHPRHYYYNNNNR 105
                      LPKG  PPS+P+  GH ++  ++KL R  + +    P P H      +R
Sbjct: 61  SSLRDSLVLNALPKGSVPPSAPSKKGHAMININEKLFRTFATTYTTTPSPAHI-----DR 120

[Close]

BLAST of Tan0019374 vs. ExPASy TrEMBL
Match: A0A314KK12 (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_16180 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.3e-05
Identity = 42/108 (38.89%), Postives = 55/108 (50.93%), Query Frame = 0


Query: 1   MATSINKSLFLIFFLLLLSSISPSSQFRTTLLLHNKYN----NNNLLSVVLPKGDAPPSS 60
           M  S   S  L+ F+L+L+S S S++ R  L LH         + L    LPKG  P S+
Sbjct: 1   MTVSKISSSILLMFILVLASFSSSTEARKLLKLHEVKKTPSLEDRLYLNALPKGRVPAST 60

Query: 61  PNNIGHVVLTDQKLLRSRSLIAAPHPRHYYYNNNNRILRSVPSPGAGH 105
           P+  GH    D+KL+ +R L A            +RILRSVPSPG GH
Sbjct: 61  PSKKGHSYTIDEKLI-ARHLAAV-----------DRILRSVPSPGVGH 96

[Close]

BLAST of Tan0019374 vs. ExPASy TrEMBL
Match: A0A1U7Z5P9 (uncharacterized protein LOC104586566 OS=Nelumbo nucifera OX=4432 GN=LOC104586566 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04
Identity = 39/109 (35.78%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 1   MATSINKSLFLIFFLLLLSSISPSSQFRTTLLLHNKYN-----NNNLLSVVLPKGDAPPS 60
           MA S+  S  L+ FL+L +S +P  + R  L + +K        ++L+   LPKG  PPS
Sbjct: 1   MARSVTAS--LVLFLVLFASFAPFLEARKLLKMESKKKVPAALRDSLVLSALPKGAVPPS 60

Query: 61  SPNNIGHVVLTDQKLLRSRSLIAAPHPRHYYYNNNNRILRSVPSPGAGH 105
           +P++ GH V+ DQKL               +    +R L+SVPSPG GH
Sbjct: 61  APSDKGHSVIVDQKLF------------SMHLPKADRSLQSVPSPGVGH 95

[Close]

BLAST of Tan0019374 vs. ExPASy TrEMBL
Match: A0A6P3ZC36 (precursor of CEP14 OS=Ziziphus jujuba OX=326968 GN=LOC107412223 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.7e-04
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = 0


Query: 8   SLFLIFFLLLLSSISPSSQFRTTLLLHNKYNN-----NNLLSVVLPKGDAPPSSPNNIGH 67
           SL LI F+++ +S + SS+ R  L++ ++        ++L    LPKG+ P SSP++ GH
Sbjct: 6   SLSLILFMVVFASSAWSSEARKLLVIKDEEKRAPSMVDSLFLSALPKGNVPSSSPSHKGH 65

Query: 68  VVLTDQKLLRSRSLIAAPHPRHYYYNNNNRILRSVPSPGAGH 105
            V+ ++KL+ +R LI+             RIL+SVPSPG GH
Sbjct: 66  AVVVNEKLI-ARHLISI-----------ERILQSVPSPGMGH 95

[Close]

BLAST of Tan0019374 vs. ExPASy TrEMBL
Match: A0A438HH69 (Precursor of CEP14 OS=Vitis vinifera OX=29760 GN=CEP14_0 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.5e-04
Identity = 40/107 (37.38%), Postives = 55/107 (51.40%), Query Frame = 0


Query: 6   NKSLFLIFFLLLLSSISPSSQFRTTLLL----HNKYN----NNNLLSVVLPKGDAPPSSP 65
           +K+L LI F ++ SS  PS   R  L +    HNK +      +L+   LPKG  P SSP
Sbjct: 4   HKALLLILF-VVFSSFLPSLDARKLLDMEEDSHNKKSIPALEASLVLAALPKGTVPASSP 63

Query: 66  NNIGHVVLTDQKLLRSRSLIAAPHPRHYYYNNNNRILRSVPSPGAGH 105
           +  GH ++ D+KL+     +             +RILRSVPSPG GH
Sbjct: 64  SKKGHAMVVDEKLIARHLAVV------------DRILRSVPSPGVGH 97

[Close]

BLAST of Tan0019374 vs. TAIR 10
Match: AT1G16950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 2.7e-04
Identity = 33/97 (34.02%), Postives = 47/97 (48.45%), Query Frame = 0


Query: 11  LIFFLLLLSSISPSSQFRTTLLLHNKYNNNNLLSVVLPKGDAPPSSPNNIGHVVL---TD 70
           +   +L++  +  SSQ R  L+ +    +  L    LPKG+ PPS P++ GH      TD
Sbjct: 11  ICLLILIVGFVLQSSQARKVLVPYG--TSKGLFLSALPKGNVPPSGPSDKGHTSPPDDTD 70

Query: 71  QKLLRSRSLIAAPHPRHYYYNNNNRILRSVPSPGAGH 105
           Q+++   S      P  Y      R L SVPSPG GH
Sbjct: 71  QRMVPENS------PEIY------RRLESVPSPGVGH 93

The following BLAST results are available for this feature:

BLAST of Tan0019374 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0019374 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_015065205.1	1.0e-05	41.12	precursor of CEP14 [Solanum pennellii]	[more]
OVA16140.1	2.3e-05	37.88	hypothetical protein BVC80_8927g22 [Macleaya cordata]	[more]
KAF7803270.1	3.9e-05	45.07	precursor of CEP14 [Senna tora]	[more]
XP_027348625.1	1.5e-04	39.42	precursor of CEP14 [Abrus precatorius]	[more]
OIT29134.1	1.9e-04	38.89	hypothetical protein A4A49_16180 [Nicotiana attenuata]	[more]

BLAST of Tan0019374 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A200R0F1	1.1e-05	37.88	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8927g22 PE=4 SV=1	[more]
A0A314KK12	9.3e-05	38.89	Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_16180 PE=4 SV=1	[more]
A0A1U7Z5P9	1.6e-04	35.78	uncharacterized protein LOC104586566 OS=Nelumbo nucifera OX=4432 GN=LOC104586566...	[more]
A0A6P3ZC36	2.7e-04	37.25	precursor of CEP14 OS=Ziziphus jujuba OX=326968 GN=LOC107412223 PE=4 SV=1	[more]
A0A438HH69	3.5e-04	37.38	Precursor of CEP14 OS=Vitis vinifera OX=29760 GN=CEP14_0 PE=4 SV=1	[more]

BLAST of Tan0019374 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16950.1	2.7e-04	34.02	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038930	Precursor of CEP13/CEP14	PANTHER	PTHR37180	PRECURSOR OF CEP14	coord: 4..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0019374.1	Tan0019374.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006995	cellular response to nitrogen starvation
biological_process	GO:0006970	response to osmotic stress