Tan0019113 (gene) Snake gourd v1

Overview
NameTan0019113
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibonuclease H
LocationLG06: 14725321 .. 14726250 (+)
RNA-Seq ExpressionTan0019113
SyntenyTan0019113
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGAGGAAGTCCCCTCGAAATTCAAGCTGCCAACGATCAAGGCCTACGATGGATCGAAAGATCCAGTGGAACACCTTGACACATTTCGGTCATGGATGGAACTTCATGGAGTCCGAGATGCGATCAAGTGTAGGGCGTTCTCGTTCACGTTGACAGGACCAGCTCGGAAGTGGTTCAGACAACTTAAGAGAAAGTCGATCGCTTCCTTCCGAGAGTTGGCTCGAGCCTTTGTGACCCAATTCCTCGGAGGTAGGGATCAACGACAAGCGACACATCTCCTTACCATTAAGCAAGGCAACAACAAGACTTTGAGGGAGTATGTATCCCGCTTCAACAGTGAAGCCCTCCAAATTGAAGGGTATACTAATGGTGCAACCCTAACAACGATCGTAGCCGAACTGCGAGACGAGAGGTTCCTTTGGTCGCTAGGTAAGAAAGCTCCAACAACTTACGTTGAGTTACTGACCATGGCTCAAAAGTATATGAGTGCAAGAGAATTGCTTCGTTCGAGGCGTGCACCAGACGACAAGTAGAGTAGGGACCGCGAGAGAAACAAGAGTCGACCGGAGGAAGACCGAAGCGACTCTCGAAAGCGAAAGCACGAGGAACGGTCCAACGTCAACAAAAAATCTGTGAGGAGGGGCTTACCACCAAGCAAGTTTGAGCGGTATACCCCAACGAGTGTCCCTATCGAACAGATCCTGATGGAAGTACGCGATAAAAACGTTCTGAAGTGGCCGGCTAAGCTGAAAGCAGGGTCCCACAGGAGGAATAAGGACAAATATTGTCTATTCTATCGTGACCATGGACACTCTACGTCAGATTGTTATGACCTGAAGGAAGTCATAGAAACGCTGATCCAGAAAGGACAATTGAAGGAATATGTCAGCGCAAGTGGGCGACGCGAGGCCAGATCGAGTCGGTAG

mRNA sequence

ATGCAGGAGGAAGTCCCCTCGAAATTCAAGCTGCCAACGATCAAGGCCTACGATGGATCGAAAGATCCAGTGGAACACCTTGACACATTTCGGTCATGGATGGAACTTCATGGAGTCCGAGATGCGATCAAGTGGTATACTAATGGTGCAACCCTAACAACGATCGTAGCCGAACTGCGAGACGAGAGGTTCCTTTGGTCGCTAGGTAAGAAAGCTCCAACAACTTACGTTGAGTTACTGACCATGGCTCAAAAGTATATGAGTGCAAGAGAATTGCTTCCGGTATACCCCAACGAGTGTCCCTATCGAACAGATCCTGATGGAATCATAGAAACGCTGATCCAGAAAGGACAATTGAAGGAATATGTCAGCGCAAGTGGGCGACGCGAGGCCAGATCGAGTCGGTAG

Coding sequence (CDS)

ATGCAGGAGGAAGTCCCCTCGAAATTCAAGCTGCCAACGATCAAGGCCTACGATGGATCGAAAGATCCAGTGGAACACCTTGACACATTTCGGTCATGGATGGAACTTCATGGAGTCCGAGATGCGATCAAGTGGTATACTAATGGTGCAACCCTAACAACGATCGTAGCCGAACTGCGAGACGAGAGGTTCCTTTGGTCGCTAGGTAAGAAAGCTCCAACAACTTACGTTGAGTTACTGACCATGGCTCAAAAGTATATGAGTGCAAGAGAATTGCTTCCGGTATACCCCAACGAGTGTCCCTATCGAACAGATCCTGATGGAATCATAGAAACGCTGATCCAGAAAGGACAATTGAAGGAATATGTCAGCGCAAGTGGGCGACGCGAGGCCAGATCGAGTCGGTAG

Protein sequence

MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIKWYTNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMAQKYMSARELLPVYPNECPYRTDPDGIIETLIQKGQLKEYVSASGRREARSSR
Homology
BLAST of Tan0019113 vs. NCBI nr
Match: RWW49536.1 (hypothetical protein BHE74_00044279 [Ensete ventricosum])

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-10
Identity = 43/144 (29.86%), Postives = 66/144 (45.83%), Query Frame = 0

Query: 5   VPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIKWYTNGA-------------- 64
           +P+ F+LP ++ YDGS DP EH+  F + M L+   DA+ W   G+              
Sbjct: 172 LPATFRLPALEPYDGSGDPTEHITAFHAQMALYDTSDALMWMAQGSDEPLSQFMGQFTSQ 231

Query: 65  -----------TLTTIVAELRDERFLWSLGKKAPTTYVELLTMAQKYMSARELLPVYPNE 124
                       +   +  LR  RF WSL ++ PTT  E+L  A +Y++A  L+     E
Sbjct: 232 VQGIPYLHPSLAIQAFLTGLRSSRFFWSLIERPPTTLPEMLQWAHQYVAAETLVAGKREE 291

BLAST of Tan0019113 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 75.5 bits (184), Expect = 4.0e-10
Identity = 49/185 (26.49%), Postives = 74/185 (40.00%), Query Frame = 0

Query: 1   MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY 60
           M+E+VP KFKLPT+K +DG  +PV+HLD +R WM+++GV DAI+              W+
Sbjct: 90  MREKVPPKFKLPTVKPFDGMTEPVDHLDAYREWMDIYGVSDAIRCRVFSTTLNGSARIWF 149

Query: 61  ------------------------------------------------------------ 109
                                                                       
Sbjct: 150 RQLKRGSISSFKSLARAFMTQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARFNEEKLQL 209

BLAST of Tan0019113 vs. NCBI nr
Match: XP_022150035.1 (uncharacterized protein LOC111018307 [Momordica charantia])

HSP 1 Score: 75.5 bits (184), Expect = 4.0e-10
Identity = 47/168 (27.98%), Postives = 69/168 (41.07%), Query Frame = 0

Query: 1   MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY 60
           M+ +VP KFKLPT+K +DG+ D V+HLD +R WM+++GV +A+K              W+
Sbjct: 5   MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWF 64

Query: 61  ------------------------------------------------------------ 92
                                                                       
Sbjct: 65  RQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQRATESLHDYVARFNEEKLQV 124

BLAST of Tan0019113 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 74.3 bits (181), Expect = 8.8e-10
Identity = 48/183 (26.23%), Postives = 72/183 (39.34%), Query Frame = 0

Query: 1   MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY 60
           M+E+VP KFKLPT+K +D + DPV+HLD +R WM+++GV +A++              W+
Sbjct: 185 MREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWF 244

Query: 61  ------------------------------------------------------------ 107
                                                                       
Sbjct: 245 RQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQV 304

BLAST of Tan0019113 vs. NCBI nr
Match: RZS27166.1 (hypothetical protein BHM03_00060598, partial [Ensete ventricosum])

HSP 1 Score: 72.0 bits (175), Expect = 4.4e-09
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 0

Query: 5   VPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIKWYTNGATLTTIVAELRDERF 64
           +P+ F+LP+++ YDGS D  EH+  FR+ M L+ + DA+ W   G         LR  RF
Sbjct: 117 LPTTFRLPSLEPYDGSGDLTEHIAAFRAQMALYDMSDALMWLGPG---------LRPSRF 176

Query: 65  LWSLGKKAPTTYVELLTMAQKYMSARELL 94
            WSL ++ PTT  E+L  A +YM+   L+
Sbjct: 177 FWSLIERPPTTLPEMLQRAHQYMATEMLV 196

BLAST of Tan0019113 vs. ExPASy TrEMBL
Match: A0A6J1E1E7 (uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025548 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-10
Identity = 49/185 (26.49%), Postives = 74/185 (40.00%), Query Frame = 0

Query: 1   MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY 60
           M+E+VP KFKLPT+K +DG  +PV+HLD +R WM+++GV DAI+              W+
Sbjct: 90  MREKVPPKFKLPTVKPFDGMTEPVDHLDAYREWMDIYGVSDAIRCRVFSTTLNGSARIWF 149

Query: 61  ------------------------------------------------------------ 109
                                                                       
Sbjct: 150 RQLKRGSISSFKSLARAFMTQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARFNEEKLQL 209

BLAST of Tan0019113 vs. ExPASy TrEMBL
Match: A0A6J1D7D2 (uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018307 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-10
Identity = 47/168 (27.98%), Postives = 69/168 (41.07%), Query Frame = 0

Query: 1   MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY 60
           M+ +VP KFKLPT+K +DG+ D V+HLD +R WM+++GV +A+K              W+
Sbjct: 5   MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWF 64

Query: 61  ------------------------------------------------------------ 92
                                                                       
Sbjct: 65  RQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQRATESLHDYVARFNEEKLQV 124

BLAST of Tan0019113 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.3e-10
Identity = 48/183 (26.23%), Postives = 72/183 (39.34%), Query Frame = 0

Query: 1   MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY 60
           M+E+VP KFKLPT+K +D + DPV+HLD +R WM+++GV +A++              W+
Sbjct: 185 MREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWF 244

Query: 61  ------------------------------------------------------------ 107
                                                                       
Sbjct: 245 RQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQV 304

BLAST of Tan0019113 vs. ExPASy TrEMBL
Match: A0A6J1DZ49 (uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024851 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.1e-09
Identity = 45/170 (26.47%), Postives = 68/170 (40.00%), Query Frame = 0

Query: 1   MQEEVPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY 60
           M+E+   KFKLP I  YDGS DP++HLD +R W +++ +R+AI+              W+
Sbjct: 1   MKEKARPKFKLPAIAEYDGSADPIDHLDAYREWADIYDIREAIRCRVFSFTLTGSARNWF 60

Query: 61  ------------------------------------------------------------ 94
                                                                       
Sbjct: 61  RQLKRNSISSFKELAEAFVTQFVGGRVKSKPVTYLLTIKQKATESLKEYVARFNEEKLQV 120

BLAST of Tan0019113 vs. ExPASy TrEMBL
Match: A0A2N9G8N5 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23697 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.1e-08
Identity = 36/110 (32.73%), Postives = 62/110 (56.36%), Query Frame = 0

Query: 5   VPSKFKLPTIKAYDGSKDPVEHLDTFRSWMELHGVRDAIK--------------WY---- 64
           +PSKF++P+++ +DGSKDP++HL++F++ M L GV D I               W+    
Sbjct: 211 LPSKFRMPSLETFDGSKDPLDHLESFKTVMCLQGVPDEIMCRAFPTTLKGPARVWFKKIT 270

Query: 65  ---TNGATLTTIVAELRDERFLWSLGKKAPTTYVELLTMAQKYMSARELL 94
               +   LT  ++ L+   FL+S+ K  P+T  E++  AQ++M+  E L
Sbjct: 271 PRLDDKVVLTAFISGLQAGDFLFSVYKDPPSTMTEMMYEAQRHMNGEEAL 320

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
RWW49536.13.0e-1029.86hypothetical protein BHE74_00044279 [Ensete ventricosum][more]
XP_022159109.14.0e-1026.49uncharacterized protein LOC111025548 [Momordica charantia][more]
XP_022150035.14.0e-1027.98uncharacterized protein LOC111018307 [Momordica charantia][more]
XP_022158830.18.8e-1026.23uncharacterized protein LOC111025293 [Momordica charantia][more]
RZS27166.14.4e-0939.33hypothetical protein BHM03_00060598, partial [Ensete ventricosum][more]
Match NameE-valueIdentityDescription
A0A6J1E1E71.9e-1026.49uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1D7D21.9e-1027.98uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1DWY04.3e-1026.23uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DZ492.1e-0926.47uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A2N9G8N53.1e-0832.73Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23697 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0019113.1Tan0019113.1mRNA